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https://www.readbyqxmd.com/read/28089543/optimal-regulatory-circuit-topologies-for-fold-change-detection
#1
Miri Adler, Pablo Szekely, Avi Mayo, Uri Alon
Evolution repeatedly converges on only a few regulatory circuit designs that achieve a given function. This simplicity helps us understand biological networks. However, why so few circuits are rediscovered by evolution is unclear. We address this question for the case of fold-change detection (FCD): a response to relative changes of input rather than absolute changes. Two types of FCD circuits recur in biological systems-the incoherent feedforward and non-linear integral-feedback loops. We performed an analytical screen of all three-node circuits in a class comprising ∼500,000 topologies...
January 10, 2017: Cell Systems
https://www.readbyqxmd.com/read/28077627/a-feasibility-study-on-the-use-of-phantoms-with-statistical-lung-masses-for-determining-the-uncertainty-in-the-dose-absorbed-by-the-lung-from-broad-beams-of-incident-photons-and-neutrons
#2
Atiyeh Ebrahimi Khankook, Hashem Miri Hakimabad, Laleh Rafat Motavalli
Computational models of the human body have gradually become crucial in the evaluation of doses absorbed by organs. However, individuals may differ considerably in terms of organ size and shape. In this study, the authors sought to determine the energy-dependent standard deviations due to lung size of the dose absorbed by the lung during external photon and neutron beam exposures. One hundred lungs with different masses were prepared and located in an adult male International Commission on Radiological Protection (ICRP) reference phantom...
January 10, 2017: Journal of Radiation Research
https://www.readbyqxmd.com/read/28058236/the-iranian-version-of-the-copenhagen-psychosocial-questionnaire-copsoq-for-assessment-of-psychological-risk-factors-at-work
#3
Mohammad Aminian, Iman Dianat, Anvar Miri, Mohammad Asghari-Jafarabadi
Background: The Copenhagen Psychosocial Questionnaire (COPSOQ) is a widely used tool for evaluation of psychosocial risk factors at work. The aims of this study were to describe the short version of Farsi COPSOQ and to present its psychometric properties. Methods: A total of 427 administrative health care staff participated in this descriptive methodological study. Forward-backward procedure was adopted to translate the questionnaire from English into Farsi. Content validity was assessed by a panel of 10 experts...
2017: Health Promotion Perspectives
https://www.readbyqxmd.com/read/28047952/su-f-t-240-epid-based-quality-assurance-for-dosimetric-credentialing
#4
N Miri, J Lehmann, P Vial, P Greer
PURPOSE: We propose a novel dosimetric audit method for clinical trials using EPID measurements at each center and a standardized EPID to dose conversion algorithm. The aim of this work is to investigate the applicability of the EPID method to different linear accelerator, EPID and treatment planning system (TPS) combinations. METHODS: Combination of delivery and planning systems were three Varian linacs including one Pinnacle and two Eclipse TPS and, two ELEKTA linacs including one Pinnacle and one Monaco TPS...
June 2016: Medical Physics
https://www.readbyqxmd.com/read/28047126/su-d-201-06-remote-dosmetric-auditing-of-vmat-deliveries-for-clinical-trials-using-epid
#5
K Legge, J Lehmann, P Vial, N Miri, P Greer
PURPOSE: To develop a method for remote dosimetric auditing the delivery of VMAT using EPID which allows for simple, inexpensive and time efficient dosimetric credentialing for clinical trials. METHODS: Remote centers are provided with CT datasets and planning guidelines to produce VMAT plans for a head and neck and a post-prostatectomy treatment. Plans are transferred in the planning system to two virtual water equivalent phantoms, one flat and one cylindrical...
June 2016: Medical Physics
https://www.readbyqxmd.com/read/28046656/tu-fg-201-06-remote-dosimetric-auditing-for-clinical-trials-using-epid-dosimetry-a-pilot-study
#6
N Miri, J Lehmann, P Vial, K Legge, P Greer
PURPOSE: To perform a pilot study for remote dosimetric credentialing of intensity modulated radiation therapy (IMRT) based clinical trials. The study introduces a novel, time efficient and inexpensive dosimetry audit method for multi-center credentialing. The method employs electronic portal imaging device (EPID) to reconstruct delivered dose inside a virtual flat/cylindrical water phantom. METHODS: Five centers, including different accelerator types and treatment planning systems (TPS), were asked to download two CT data sets of a Head and Neck (H&N) and Postprostatectomy (P-P) patients to produce benchmark plans...
June 2016: Medical Physics
https://www.readbyqxmd.com/read/28028072/model-based-analysis-of-dna-replication-profiles-predicting-replication-fork-velocity-and-initiation-rate-by-profiling-free-cycling-cells
#7
Ariel Gispan, Miri Carmi, Naama Barkai
Eukaryotic cells initiate DNA synthesis by sequential firing of hundreds of origins. This ordered replication is described by replication profiles, which measure the DNA content within a cell population. Here, we show that replication dynamics can be deduced from replication profiles of free-cycling cells. While such profiles lack explicit temporal information, they are sensitive to fork velocity and initiation capacity through the passive replication pattern, namely the replication of origins by forks emanating elsewhere...
December 27, 2016: Genome Research
https://www.readbyqxmd.com/read/28024777/teleorthodontics
#8
EDITORIAL
Georgia Kotantoula, Miri Haisraeli-Shalish, Laurance Jerrold
No abstract text is available yet for this article.
January 2017: American Journal of Orthodontics and Dentofacial Orthopedics
https://www.readbyqxmd.com/read/28018740/multimodal-registration-of-sd-oct-volumes-and-fundus-photographs-using-histograms-of-oriented-gradients
#9
Mohammad Saleh Miri, Michael D Abràmoff, Young H Kwon, Mona K Garvin
With availability of different retinal imaging modalities such as fundus photography and spectral domain optical coherence tomography (SD-OCT), having a robust and accurate registration scheme to enable utilization of this complementary information is beneficial. The few existing fundus-OCT registration approaches contain a vessel segmentation step, as the retinal blood vessels are the most dominant structures that are in common between the pair of images. However, errors in the vessel segmentation from either modality may cause corresponding errors in the registration...
December 1, 2016: Biomedical Optics Express
https://www.readbyqxmd.com/read/28003844/antihypertensive-effects-of-new-dihydropyridine-derivatives-on-phenylephrine-raised-blood-pressure-in-rats
#10
Sara Rowghani Haghighi Fard, Ramin Miri, Ali Akbar Nekooeian
Changes in the substitutions at C-3 and C-5 positions of 4-(1-methyl-5-nitro-2-imidazolyl) dihydropyridine analogs of nifedipine have led to changes in potency of the compounds. The objective of the present study was to examine the hypotensive effects of 5 newly synthesized dihydropyridine derivatives of nifedipine in rats with phenylephrine-raised blood pressure. Anesthetized Sprague-Dawley rats were randomly assigned to 19 groups of 7 animals each. Control group received the vehicle dimethylsulfoxide (0.05 mL), 3 groups were given nifedipine at 100, 300, or 1000 μg/kg, and 5 other groups each composed of 3 subgroups administered one of the 5 new dihydropyridine compound at 100, 300, or 1000 μg/kg...
December 2016: Research in Pharmaceutical Sciences
https://www.readbyqxmd.com/read/28002593/genetic-variations-of-21-str-markers-on-chromosomes-13-18-21-x-and-y-in-the-south-iranian-population
#11
J Saberzadeh, M R Miri, M B Tabei, M Dianatpour, M Fardaei
Quantitative fluorescent polymerase chain reaction (QF-PCR), in recent years, has been accepted as a rapid, high throughput, and sensitive method for prenatal diagnosis of common chromosomal aneuploidies. Since short tandem repeats (STRs) are the cornerstone of QF-PCR technique, selection of the most polymorphic STR markers is an essential step for a successful QF-PCR assay. The genetic variation parameters of each STR marker differ among different populations. In this study, we investigated the size, frequency, heterozygosity, polymorphism information content, power of discrimination, and other genetic polymorphism data for 21 STR markers on chromosomes 13, 18, 21, X, and Y in 1000 amniotic fluid samples obtained from south Iranian women...
December 19, 2016: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/27988293/processing-and-properties-of-eco-friendly-bio-nanocomposite-films-filled-with-cellulose-nanocrystals-from-sugarcane-bagasse
#12
Mounir El Achaby, Nassima El Miri, Adil Aboulkas, Mohamed Zahouily, Essaid Bilal, Abdellatif Barakat, Abderrahim Solhy
Novel synthesis strategy of eco-friendly bio-nanocomposite films have been exploited using cellulose nanocrystals (CNC) and polyvinyl alcohol/carboxymethyl cellulose (PVA/CMC) blend matrix as a potential in food packaging application. The CNC were extracted from sugarcane bagasse using sulfuric acid hydrolysis, and they were successfully characterized regarding their morphology, size, crystallinity and thermal stability. Thereafter, PVA/CMC-CNC bio-nanocomposite films, at various CNC contents (0.5-10wt%), were fabricated by the solvent casting method, and their properties were investigated...
December 14, 2016: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/27987831/development-and-characterization-of-a-bioglass-chitosan-composite-as-an-injectable-bone-substitute
#13
Parastoo Khoshakhlagh, Sayed Mahmood Rabiee, Gita Kiaee, Pedram Heidari, Amir K Miri, Roshanak Moradi, Fathollah Moztarzadeh, Roya Ravarian
SiO2-CaO-P2O5 based bioglass (BG) systems constitute a group of materials that have wide applications in bone implants. Chitosan (Cn) is a biocompatible and osteoconductive natural polymer that can promote wound healing. In this study, bioactivity of chitosan/bioglass (CnB) composites as minimally invasive bone regenerative materials was assessed both in vitro and in vivo. Injectability tests and scanning electron microscopy (SEM) results demonstrated the formation of uniform injectable paste-like composites using BG particles and Cn...
February 10, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/27981890/molecular-dynamics-simulation-and-molecular-docking-studies-of-1-4-dihydropyridines-as-p-glycoprotein-s-allosteric-inhibitors
#14
Omolbanin Shahraki, Farshid Zargari, Najmeh Edraki, Mehdi Khoshneviszadeh, Omidreza Firuzi, Ramin Miri
P-glycoprotein (P-gp) is a main factor contributing to multidrug resistance. The effect of this transporter protein on limiting the effectiveness of chemotherapy has been shown by various studies. In a previous report, we synthesized some1,4-dihydropyridine (DHP) derivatives as inhibitors of human P-gp. In the present study, a computational approach has been exploited to reveal the main interactions between DHPs and P-gp. In order to do this, homology modeling was performed to obtain a model of the protein...
December 16, 2016: Journal of Biomolecular Structure & Dynamics
https://www.readbyqxmd.com/read/27974731/egb-761-protects-cardiac-microvascular-endothelial-cells-against-hypoxia-reoxygenation-injury-and-exerts-inhibitory-effect-on-atm-pathway
#15
Chao Zhang, Deng-Feng Wang, Zhuang Zhang, Dong Han, Kan Yang
Ginkgo biloba extract (EGb 761) has been widely clinically used to reduce myocardial ischemia reperfusion injury (MIRI). Microvascular endothelial cells (MVECs) may be a proper cellular model in vitro for the effect and mechanism study against MIRI. However, the effect of EGb 761 on MVECs resisting hypoxia/reoxygenation (H/R) injury is little reported. In this study, H/R-injuried MVECs were treated with EGb 761, then cell viability, apoptosis, ROS production, SOD activity, caspase-3 activity, and the protein level of ATM, γ-H2AX, p53, Bax were measured...
December 14, 2016: Journal of Microbiology and Biotechnology
https://www.readbyqxmd.com/read/27960187/rnai-mediated-down-regulation-of-cd47-protects-against-ischemia-reperfusion-induced-myocardial-damage-via-activation-of-enos-in-a-rat-model
#16
Hui-Bo Wang, Jun Yang, Jia-Wang Ding, Li-Hua Chen, Song Li, Xiao-Wen Liu, Chao-Jun Yang, Zhi-Xin Fan, Jian Yang
BACKGROUND/AIMS: Oxidative stress is strongly implicated in the pathogenesis of myocardial damage caused by ischemia reperfusion (I/R). Previous studies have confirmed that cardiac CD47 drives left ventricular heart failure. However, the role for CD47 in myocardial I/R injury (MIRI) has not previously been proposed. This study was designed to investigate whether down-regulation of CD47 using RNA interference (RNAi) technology can relieve inhibition of nitric oxide signaling and attenuate myocardial damage in a rat model of I/R...
2016: Cellular Physiology and Biochemistry
https://www.readbyqxmd.com/read/27958389/a-novel-pleuromutilin-antibacterial-compound-its-binding-mode-and-selectivity-mechanism
#17
Zohar Eyal, Donna Matzov, Miri Krupkin, Susanne Paukner, Rosemarie Riedl, Haim Rozenberg, Ella Zimmerman, Anat Bashan, Ada Yonath
The increasing appearance of pathogenic bacteria with antibiotic resistance is a global threat. Consequently, clinically available potent antibiotics that are active against multidrug resistant pathogens are becoming exceedingly scarce. Ribosomes are a main target for antibiotics, and hence are an objective for novel drug development. Lefamulin, a semi-synthetic pleuromutilin compound highly active against multi-resistant pathogens, is a promising antibiotic currently in phase III trials for the treatment of community-acquired bacterial pneumonia in adults...
December 13, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27943109/morphokinetics-of-vitrified-and-warmed-blastocysts-predicts-implantation-potential
#18
T Ebner, P Oppelt, E Radler, C Allerstorfer, A Habelsberger, R B Mayer, O Shebl
PURPOSE: It was studied whether morphokinetics of blastocoele re-expansion and hatching in vitrified-warmed blastocysts is predictive of implantation, clinical pregnancy, and live birth. METHODS: In 144 patients aiming for single warmed blastocyst transfer, blastocysts were cultured in a new time-lapse system (Miri® TL) immediately after warming. Video sequences with an image interval of 5 min were annotated and the corresponding morphokinetic variables were correlated with pregnancy outcome...
December 9, 2016: Journal of Assisted Reproduction and Genetics
https://www.readbyqxmd.com/read/27943063/association-of-pdcd1-gene-markers-with-susceptibility-to-thyroid-cancer
#19
M R Haghshenas, M H Dabbaghmanesh, A Miri, A Ghaderi, N Erfani
PURPOSE: PD-1 receptor is a co-signaling molecule with an important role in regulation of T-lymphocyte activity. Correlation between PD-1 gene (PDCD1) polymorphisms and some immune-related diseases has been reported before. In current study, we aimed to investigate the association of PD-1 polymorphisms at positions +7146 G/A (PD-1.3) and +7785 C/T (PD-1.5), as well as the emerged haplotypes with susceptibility to thyroid carcinoma. METHODS: One hundred five patients with confirmed thyroid cancer and 160 healthy individuals as control group were enrolled...
December 9, 2016: Journal of Endocrinological Investigation
https://www.readbyqxmd.com/read/27941241/pax6-maintains-%C3%AE-cell-identity-by-repressing-genes-of-alternative-islet-cell-types
#20
Avital Swisa, Dana Avrahami, Noa Eden, Jia Zhang, Eseye Feleke, Tehila Dahan, Yamit Cohen-Tayar, Miri Stolovich-Rain, Klaus H Kaestner, Benjamin Glaser, Ruth Ashery-Padan, Yuval Dor
Type 2 diabetes is thought to involve a compromised β cell differentiation state, but the mechanisms underlying this dysfunction remain unclear. Here, we report a key role for the TF PAX6 in the maintenance of adult β cell identity and function. PAX6 was downregulated in β cells of diabetic db/db mice and in WT mice treated with an insulin receptor antagonist, revealing metabolic control of expression. Deletion of Pax6 in β cells of adult mice led to lethal hyperglycemia and ketosis that were attributed to loss of β cell function and expansion of α cells...
January 3, 2017: Journal of Clinical Investigation
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