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cyclic di-gmp

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https://www.readbyqxmd.com/read/29755425/identification-and-characterization-of-c-di-gmp-metabolic-enzymes-of-leptospira-interrogans-and-c-di-gmp-fluctuations-after-thermal-shift-and-infection
#1
Guohui Xiao, Liangliang Kong, Rongbo Che, Yusi Yi, Qinchao Zhang, Jie Yan, Xu'ai Lin
Leptospirosis is a widespread zoonotic disease caused by pathogenic Leptospira species. The most common species, Leptospira interrogans , can transfer from contaminated soil or water to the human body. It is able to survive these changing environments through sensing and responding to the changes of environmental cues. Cyclic di-GMP (c-di-GMP) is a special secondary messenger in bacteria, which can respond to the environment and regulate diverse bacterial behaviors. The c-di-GMP levels in bacterial cells are regulated by diguanylatecyclases (DGC) and phosphodiesterases (PDE), which are responsible for synthesizing or hydrolyzing c-di-GMP, respectively...
2018: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29751298/role-of-cyclic-diguanylate-in-affecting-microbial-community-shifts-at-different-ph-during-the-operation-of-simultaneous-partial-nitrification-anammox-and-denitrification-process
#2
Chao Wang, Sitong Liu, Xiaochen Xu, Yongzhao Guo, Fenglin Yang, Dong Wang
The intracellular cyclic diguanylate acid (c-di-GMP) has emerged as a prominent second signal molecule that coordinates sessile-motile transition and biofilm formation in many bacteria. Herein, we study the role of c-di-GMP in affecting microbial community shifts at different pH levels during simultaneous partial nitrification, anammox and denitrification process (SNAD) in integrated fixed film activated sludge (IFAS) reactor. The results demonstrated that the contents of c-di-GMP notably decreased in suspended sludge, whereas the contents of c-di-GMP in biofilm had no significant change as pH gradually increased from 7...
May 8, 2018: Science of the Total Environment
https://www.readbyqxmd.com/read/29737353/induction-of-necrotic-cell-death-and-activation-of-sting-in-the-tumor-microenvironment-via-cationic-silica-nanoparticles-leading-to-enhanced-antitumor-immunity
#3
Myunggi An, Chunsong Yu, Jingchao Xi, Joyce Reyes, Guangzhao Mao, Wei-Zen Wei, Haipeng Liu
Nanotechnology has demonstrated tremendous clinical utility, with potential applications in cancer immunotherapy. Although nanoparticles with intrinsic cytotoxicity are often considered unsuitable for clinical applications, such toxicity may be harnessed in the fight against cancer. Nanoparticle-associated toxicity can induce acute necrotic cell death, releasing tumor-associated antigens which may be captured by antigen-presenting cells to initiate or amplify tumor immunity. To test this hypothesis, cytotoxic cationic silica nanoparticles (CSiNPs) were directly administered into B16F10 melanoma implanted in C57BL/6 mice...
May 8, 2018: Nanoscale
https://www.readbyqxmd.com/read/29728456/a-bipartite-periplasmic-receptor-diguanylate-cyclase-pair-xac2383-xac2382-in-the-bacterium-xanthomonas-citri
#4
Raphael D Teixeira, Cristiane R Guzzo, Santiago Justo Arévalo, Maxuel O Andrade, Josielle Abrahão, Robson F de Souza, Chuck S Farah
The second messenger cyclic diguanylate monophosphate (c-di-GMP) is a central regulator of bacterial lifestyle, controlling several behaviors, including the switch between sessile and motile states. C-di-GMP levels are controlled by the interplay between diguanylate cyclases (DGCs) and phosphodiesterases (PDEs), which synthesize and hydrolyze this second messenger, respectively. These enzymes often contain additional domains that regulate activity via binding of small molecules, covalent modification or protein-protein interactions...
May 4, 2018: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/29703735/the-catabolite-repressor-activator-cra-bridges-a-connection-between-carbon-metabolism-and-host-colonization-in-the-plant-drought-resistance-promoting-bacterium-pantoea-alhagi-ltyr-11z
#5
Lei Zhang, Muhang Li, Qiqi Li, Chaoqiong Chen, Meng Qu, Mengyun Li, Yao Wang, Xihui Shen
Efficient root colonization is a prerequisite for application of plant growth promoting (PGP) bacteria in improving health and yield of agricultural crops. We have recently identified an endophytic bacterium Pantoea alhagi LTYR-11Z with multiple PGP properties that effectively colonizes the root system of wheat and improves its growth and drought tolerance. To identify novel regulatory genes required for wheat colonization, we screened a LTYR-11Z transposon (Tn) insertion library and found cra to be a colonization-related gene...
April 27, 2018: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/29693296/recognition-of-cyclic-di-gmp-by-a-riboswitch-conducts-translational-repression-through-masking-the-ribosome-binding-site-distant-from-the-aptamer-domain
#6
Saki Inuzuka, Hitoshi Kakizawa, Kei-Ichiro Nishimura, Takuto Naito, Katsushi Miyazaki, Hiroyuki Furuta, Shigeyoshi Matsumura, Yoshiya Ikawa
The riboswitch is a class of RNA-based gene regulatory machinery that is dependent on recognition of its target ligand by RNA tertiary structures. Ligand recognition is achieved by the aptamer domain, and ligand-dependent structural changes of the expression platform then usually mediate termination of transcription or translational initiation. Ligand-dependent structural changes of the aptamer domain and expression platform have been reported for several riboswitches with short (<40 nucleotides) expression platforms...
April 25, 2018: Genes to Cells: Devoted to Molecular & Cellular Mechanisms
https://www.readbyqxmd.com/read/29674724/complete-genome-analysis-of-gluconacetobacter-xylinus-cgmcc-2955-for-elucidating-bacterial-cellulose-biosynthesis-and-metabolic-regulation
#7
Miao Liu, Lingpu Liu, Shiru Jia, Siqi Li, Yang Zou, Cheng Zhong
Complete genome sequence of Gluconacetobacter xylinus CGMCC 2955 for fine control of bacterial cellulose (BC) synthesis is presented here. The genome, at 3,563,314 bp, was found to contain 3,193 predicted genes without gaps. There are four BC synthase operons (bcs), among which only bcsI is structurally complete, comprising bcsA, bcsB, bcsC, and bcsD. Genes encoding key enzymes in glycolytic, pentose phosphate, and BC biosynthetic pathways and in the tricarboxylic acid cycle were identified. G. xylinus CGMCC 2955 has a complete glycolytic pathway because sequence data analysis revealed that this strain possesses a phosphofructokinase (pfk)-encoding gene, which is absent in most BC-producing strains...
April 19, 2018: Scientific Reports
https://www.readbyqxmd.com/read/29610212/cyclic-di-gmp-positively-regulates-dna-repair-in-vibrio-cholerae
#8
Nicolas L Fernandez, Disha Srivastava, Amanda L Ngouajio, Christopher M Waters
In Vibrio cholerae , high intracellular cyclic di-GMP (c-di-GMP) is associated with a biofilm lifestyle while low intracellular c-di-GMP is associated with a motile lifestyle. C-di-GMP also regulates other behaviors such as acetoin production and type II secretion; however, the extent of phenotypes regulated by c-di-GMP is not fully understood. We recently determined that the sequence upstream of the DNA repair gene three methyladenine glycosylase ( tag ) was positively induced by c-di-GMP, suggesting this signaling system might impact DNA repair pathways...
April 2, 2018: Journal of Bacteriology
https://www.readbyqxmd.com/read/29593349/tlr1612-is-the-major-repressor-of-cell-aggregation-in-the-light-color-dependent-c-di-gmp-signaling-network-of-thermosynechococcus-vulcanus
#9
Gen Enomoto, Yukiko Okuda, Masahiko Ikeuchi
Cyclic diguanylate (c-di-GMP) is a bacterial second messenger involved in sessile/motile lifestyle transitions. We previously reported that c-di-GMP is a crucial inducer of cell aggregation of the cyanobacterium Thermosynechococcus vulcanus. The three cooperating cyanobacteriochrome photoreceptors (SesA/B/C) regulate cell aggregation in a light color-dependent manner by synthesizing/degrading c-di-GMP. Although a variety of c-di-GMP signaling proteins are encoded in cyanobacterial genomes, how c-di-GMP signaling networks are organized remains elusive...
March 28, 2018: Scientific Reports
https://www.readbyqxmd.com/read/29541628/a-c-di-gmp-modulating-protein-regulates-swimming-motility-of-burkholderia-cenocepacia-in-response-to-arginine-and-glutamate
#10
Brijesh Kumar, John L Sorensen, Silvia T Cardona
Burkholderia cenocepacia is an opportunistic bacterium that can thrive in different environments, including the amino acid-rich mucus of the cystic fibrosis (CF) lung. B. cenocepacia responds to the nutritional conditions that mimic the CF sputum by increasing flagellin expression and swimming motility. Individual amino acids also induce swimming but not flagellin expression. Here, we show that modulation of the second messenger cyclic dimeric guanosine monophosphate (c-di-GMP) levels by the PAS-containing c-di-GMP phosphodiesterase, BCAL1069 (CdpA), regulates the swimming motility of B...
2018: Frontiers in Cellular and Infection Microbiology
https://www.readbyqxmd.com/read/29523074/in-silico-comparative-analysis-of-ggdef-and-eal-domain-signaling-proteins-from-the-azospirillum-genomes
#11
Alberto Ramírez Mata, César Millán Pacheco, José F Cruz Pérez, Martha Minjárez Sáenz, Beatriz E Baca
BACKGROUND: The cyclic-di-GMP (c-di-GMP) second messenger exemplifies a signaling system that regulates many bacterial behaviors of key importance; among them, c-di-GMP controls the transition between motile and sessile life-styles in bacteria. Cellular c-di-GMP levels in bacteria are regulated by the opposite enzymatic activities of diguanylate cyclases and phosphodiesterases, which are proteins that have GGDEF and EAL domains, respectively. Azospirillum is a genus of plant-growth-promoting bacteria, and members of this genus have beneficial effects in many agronomically and ecologically essential plants...
March 9, 2018: BMC Microbiology
https://www.readbyqxmd.com/read/29514227/enzymatic-synthesis-of-cyclic-dinucleotide-analogs-by-a-promiscuous-cyclic-amp-gmp-synthetase-and-analysis-of-cyclic-dinucleotide-responsive-riboswitches
#12
Katherine D Launer-Felty, Scott A Strobel
Cyclic dinucleotides are second messenger molecules produced by both prokaryotes and eukaryotes in response to external stimuli. In bacteria, these molecules bind to RNA riboswitches and several protein receptors ultimately leading to phenotypic changes such as biofilm formation, ion transport and secretion of virulence factors. Some cyclic dinucleotide analogs bind differentially to biological receptors and can therefore be used to better understand cyclic dinucleotide mechanisms in vitro and in vivo. However, production of some of these analogs involves lengthy, multistep syntheses...
April 6, 2018: Nucleic Acids Research
https://www.readbyqxmd.com/read/29490073/hpor-a-novel-c-di-gmp-effective-transcription-factor-links-the-second-messenger-s-regulatory-function-to-the-mycobacterial-antioxidant-defense
#13
Weihui Li, Meng Li, Lihua Hu, Jingpeng Zhu, Zhiwei Xie, Jiarui Chen, Zheng-Guo He
Cyclic di-GMP (c-di-GMP) is a global signaling molecule that widely modulates diverse cellular processes. However, whether or not the c-di-GMP signal participates in regulation of bacterial antioxidant defense is unclear, and the involved regulators remain to be explored. In this study, we characterized HpoR as a novel c-di-GMP effective transcription factor and found a link between the c-di-GMP signal and the antioxidant regulation in Mycobacterium smegmatis. H2O2 stress induces c-di-GMP accumulation in M...
February 27, 2018: Nucleic Acids Research
https://www.readbyqxmd.com/read/29483294/type-iv-pili-promote-clostridium-difficile-adherence-and-persistence-in-a-mouse-model-of-infection
#14
Robert W McKee, Naira Aleksanyan, Elizabeth M Garrett, Rita Tamayo
Cyclic diguanylate (c-di-GMP) is a second messenger that regulates the transition from motile to sessile lifestyles in numerous bacteria and controls virulence factor production in a variety of pathogens. In Clostridium difficile , c-di-GMP negatively regulates flagellum biosynthesis and swimming motility and promotes the production of type IV pili (TFP), biofilm formation, and surface motility in vitro Flagella have been identified as colonization factors in C. difficile , but the role of TFP in adherence to host cells and in colonization of the mammalian gut is unknown...
May 2018: Infection and Immunity
https://www.readbyqxmd.com/read/29475901/erratum-for-chodur-et-al-the-proline-variant-of-the-w-f-l-m-t-s-r-cyclic-di-gmp-binding-motif-suppresses-dependence-on-signal-association-for-regulator-function
#15
Daniel M Chodur, Linda Guo, Meng Pu, Eric Bruger, Nico Fernandez, Chris Waters, Dean A Rowe-Magnus
No abstract text is available yet for this article.
March 15, 2018: Journal of Bacteriology
https://www.readbyqxmd.com/read/29466657/chemiluminescent-biosensors-for-detection-of-second-messenger-cyclic-di-gmp
#16
Andrew B Dippel, Wyatt A Anderson, Robert S Evans, Samuel Deutsch, Ming C Hammond
Bacteria colonize highly diverse and complex environments, from gastrointestinal tracts to soil and plant surfaces. This colonization process is controlled in part by the intracellular signal cyclic di-GMP, which regulates bacterial motility and biofilm formation. To interrogate cyclic di-GMP signaling networks, a variety of fluorescent biosensors for live cell imaging of cyclic di-GMP have been developed. However, the need for external illumination precludes the use of these tools for imaging bacteria in their natural environments, including in deep tissues of whole organisms and in samples that are highly autofluorescent or photosensitive...
March 5, 2018: ACS Chemical Biology
https://www.readbyqxmd.com/read/29466318/biofilm-formation-by-the-acidophile-bacterium-acidithiobacillus-thiooxidans-involves-c-di-gmp-pathway-and-pel-exopolysaccharide
#17
Mauricio Díaz, Matias Castro, Sylvia Copaja, Nicolas Guiliani
Acidophile bacteria belonging to the Acidithiobacillus genus are pivotal players for the bioleaching of metallic values such as copper. Cell adherence to ores and biofilm formation, mediated by the production of extracellular polymeric substances, strongly favors bioleaching activity. In recent years, the second messenger cyclic diguanylate (c-di-GMP) has emerged as a central regulator for biofilm formation in bacteria. C-di-GMP pathways have been reported in different Acidithiobacillus species; however, c-di-GMP effectors and signal transduction networks are still largely uncharacterized in these extremophile species...
February 21, 2018: Genes
https://www.readbyqxmd.com/read/29449837/cyclic-di-gmp-and-oprf-are-involved-in-the-response-of-pseudomonas-aeruginosa-to-substrate-material-stiffness-during-attachment-on-polydimethylsiloxane-pdms
#18
Fangchao Song, Hao Wang, Karin Sauer, Dacheng Ren
Recently, we reported that the stiffness of poly(dimethylsiloxane) (PDMS) affects the attachment of Pseudomonas aeruginosa , and the morphology and antibiotic susceptibility of attached cells. To further understand how P. aeruginosa responses to material stiffness during attachment, the wild-type P. aeruginosa PAO1 and several isogenic mutants were characterized for their attachment on soft and stiff PDMS. Compared to the wild-type strain, mutation of the oprF gene abolished the differences in attachment, growth, and size of attached cells between soft and stiff PDMS surfaces...
2018: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29401255/beyond-nitrogen-metabolism-nitric-oxide-cyclic-di-gmp-and-bacterial-biofilms
#19
Serena Rinaldo, Giorgio Giardina, Federico Mantoni, Alessio Paone, Francesca Cutruzzolà
The nitrogen cycle pathways are responsible for the circulation of inorganic and organic N-containing molecules in nature. Among these pathways, those involving amino acids, N-oxides and in particular nitric oxide (NO) play strategic roles in the metabolism of microorganisms in natural environments and in host-pathogen interactions. Beyond their role in the N-cycle, amino acids and NO are also signalling molecules able to influence group behaviour in microorganisms and cell-cell communication in multicellular organisms, including humans...
March 1, 2018: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/29390166/the-diguanylate-cyclase-gcpa-inhibits-the-production-of-pectate-lyases-via-the-h-ns-protein-and-rsmb-regulatory-rna-in-dickeya-dadantii
#20
Xiaochen Yuan, Fang Tian, Chenyang He, Geoffrey B Severin, Christopher M Waters, Quan Zeng, Fengquan Liu, Ching-Hong Yang
Dickeya dadantii 3937 secretes pectate lyases (Pels) to degrade plant cell walls. Previously, we have demonstrated that EGcpB and EcpC function as bis-(3',5')-cyclic dimeric guanosine monophosphate (c-di-GMP)-specific phosphodiesterases (PDEs) to positively regulate Pel production. However, the diguanylate cyclase (DGC) responsible for the synthesis of c-di-GMP and the dichotomous regulation of Pel has remained a mystery. Here, we identified GcpA as the dominant DGC to negatively regulate Pel production by the specific repression of pelD gene expression...
February 1, 2018: Molecular Plant Pathology
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