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aquatic microbiology

S L Schiff, J M Tsuji, L Wu, J J Venkiteswaran, L A Molot, R J Elgood, M J Paterson, J D Neufeld
Life originated in Archaean oceans, almost 4 billion years ago, in the absence of oxygen and the presence of high dissolved iron concentrations. Early Earth oxidation is marked globally by extensive banded iron formations but the contributing processes and timing remain controversial. Very few aquatic habitats have been discovered that match key physico-chemical parameters of the early Archaean Ocean. All previous whole ecosystem Archaean analogue studies have been confined to rare, low sulfur, and permanently stratified lakes...
April 27, 2017: Scientific Reports
Gergely Krett, Attila Szabó, Tamás Felföldi, Károly Márialigeti, Andrea K Borsodi
The aim of this study was to gain detailed information about the diversity of planktonic bacterial communities of a worldwide special peat bedded natural thermal spa lake, and to reveal the effect of a lake wall reconstruction work. To compare the efficiency of different methods used for analyzing bacterial diversity, cultivation, molecular cloning and pyrosequencing were applied simultaneously. Despite the almost unchanged physical-chemical parameters and cell count values of lake water, remarkable differences were observed in the planktonic bacterial community structures during and after the reconstruction by all applied microbiological approaches...
April 17, 2017: Archives of Microbiology
Jayanta K Biswas, Saumen Hazra, Jayjit Majumdar, Sushil K Mandal, Sabry M Shaheen, Santosh K Sarkar, Ralph Meissner, Erik Meers, Jörg Rinklebe
The study examined the impact of raking and fish bioturbation on modulating phosphorus (P) concentrations in the water and sediment under different trophic conditions. An outdoor experiment was set to monitor physicochemical and microbiological parameters of water and sediment influencing P diagenesis. A pilot study with radioactive (32)P was also performed under the agency of raking and bacteria (Bacillus sp.). Raking was more effective in release of P under unfertilized conditions by significantly enhancing orthophosphate (35%) and soluble reactive phosphate (31...
March 31, 2017: Environmental Geochemistry and Health
Didier Debroas, Isabelle Domaizon, Jean-Francois Humbert, Ludwig Jardillier, Cécile Lepère, Anne Oudart, Najwa Taïb
Although they are widespread, diverse and involved in biogeochemical cycles, microbial eukaryotes attract less attention than their prokaryotic counterparts in environmental microbiology. In this study, we used publicly available 18S barcoding data to define biases that may limit such analyses and to gain an overview of the planktonic microbial eukaryotic diversity in freshwater ecosystems. The richness of the microbial eukaryotes was estimated to 100 798 operational taxonomic units (OTUs) delineating 1267 clusters or phylogenetic units (PUs, i...
April 1, 2017: FEMS Microbiology Ecology
Michelle A Allen, Ricardo Cavicchioli
Heard Island in the Southern Ocean is a biological hotspot that is suffering the effects of climate change. Significant glacier retreat has generated proglacial lagoons, some of which are open to the ocean. We used pyrotag sequencing of SSU rRNA genes and environmental data to characterize microorganisms from two pools adjacent to animal breeding areas, two glacial lagoons and Atlas Cove (marine site). The more abundant taxa included Actinobacteria, Bacteroidetes and Proteobacteria, ciliates and picoflagellates (e...
March 14, 2017: Scientific Reports
Narayan Paudyal, Victor Anihouvi, Joseph Hounhouigan, Maitshwarelo Ignatius Matsheka, Bonno Sekwati-Monang, Wisdom Amoa-Awua, Amy Atter, Nina Bernice Ackah, Samuel Mbugua, Agnes Asagbra, Warda Abdelgadir, Jesca Nakavuma, Mogens Jakobsen, Weihuan Fang
Food safety information in the African region is insufficient and fragmented due to lack of surveillance, documentation and reporting, thereby resulting in inefficient utilization of resources, duplication of activities, and lack of synergy among the countries of the region. This paper reviews the prevalence of foodborne pathogens in seven African countries (Benin, Botswana, Ghana, Kenya, Nigeria, Sudan and Uganda) from papers in regional or international journals published between January 2000 and December 2015...
March 6, 2017: International Journal of Food Microbiology
Maria Aparecida da RessurreiÇão Brandão, Amanda Teixeira Sampaio Lopes, Maria Tereza da Silva Neta, Rhyan Barros Farias de Oliveira, Rachel Passos Rezende, George Rêgo Albuquerque, Verônica Dias Gonçalves, Dália Dos Prazeres Rodrigues, Guisla Boehs, Bianca Mendes Maciel
The microbiological quality of oysters reflects the microbiological quality of their habitats because they are filter feeders. The objective of this study was to assess the bacterial composition of the edible oyster Crassostrea rhizophorae in urban and preserved estuaries. Particularly, we assessed the presence of pathogenic bacteria, investigated antibiotic susceptibility in bacterial isolates, and quantified β-lactam antibiotic resistance genes (blaTEM, blaSHV, and blaKPC) via quantitative PCR of oyster DNA...
March 2017: Journal of Food Protection
Paula Dalcin Martins, David W Hoyt, Sheel Bansal, Christopher T Mills, Malak Tfaily, Brian A Tangen, Raymond G Finocchiaro, Michael D Johnston, Brandon C McAdams, Matthew J Solensky, Garrett J Smith, Yu-Ping Chin, Michael J Wilkins
Inland waters are increasingly recognized as critical sites of methane emissions to the atmosphere, but the biogeochemical reactions driving such fluxes are less well understood. The Prairie Pothole Region (PPR) of North America is one of the largest wetland complexes in the world, containing millions of small, shallow wetlands. The sediment pore waters of PPR wetlands contain some of the highest concentrations of dissolved organic carbon (DOC) and sulfur species ever recorded in terrestrial aquatic environments...
January 24, 2017: Global Change Biology
Luis Jose Rene Arredondo-Hernandez, Carlos Diaz-Avalos, Yolanda Lopez-Vidal, Gonzalo Castillo-Rojas, Marisa Mazari-Hiriart
A particular challenge to water safety in populous intertropical regions is the lack of reliable faecal indicators to detect microbiological contamination of water, while the numerical relationships of specific viral indicators remain largely unexplored. The aim of this study was to investigate the numerical relationships of FRNA-bacteriophage genotypes, adenovirus 41, and human adenoviruses (HADV) in Mexican surface water systems to assess sewage contamination. We studied the presence of HADV, HADV41 and FRNA bacteriophage genotypes in water samples and quantified by qPCR and RT-qPCR...
2017: PloS One
C Esteve, R Merchán, E Alcaide
Microbiological analyses were conducted on wild eels from the L'Albufera Lake (Spain). A total of 174 individuals were collected in two surveys (i.e. year 2008 and autumn-winter 2014) among those caught by local fishermen into the lagoon. The prevalence of Shewanella putrefaciens group was 1.7% in 2008 and rose above 32% in 2014. It was due to an outbreak of shewanellosis that presented a morbidity rate of 64%. S. putrefaciens group strains were isolated as pure cultures from the sick eels that showed white ulcers surrounded by a reddish inflammation, damage of the mouth, extensive skin discoloration, exophthalmia, ascites and bad odour...
December 16, 2016: Journal of Fish Diseases
Jacinta M M Oliveira, Victor Galhano, Isabel Henriques, Amadeu M V M Soares, Susana Loureiro
This study aimed to assess the effects of Basagran(®) on zebrafish (Danio rerio) embryos. The embryos were exposed to Basagran(®) at concentrations ranging from 120.0 to 480.6 mg/L, and the effects on embryo development (up to 96 h) and bacterial communities of 96 h-larvae were assessed. The embryo development response was time-dependent and concentration-dependent (106.35 < EC50 < 421.58 mg/L). The sensitivity of embryo-related endpoints decreased as follows: blood clotting in the head and/or around the yolk sac > delay or anomaly in yolk sac absorption > change in swimming equilibrium > development of pericardial and/or yolk sac oedema > scoliosis...
February 2017: Environmental Pollution
Craig Baker-Austin, Joaquin Trinanes, Narjol Gonzalez-Escalona, Jaime Martinez-Urtaza
There is a growing interest in the role of climate change in driving the spread of waterborne infectious diseases, such as those caused by bacterial pathogens. One particular group of pathogenic bacteria - vibrios - are a globally important cause of diseases in humans and aquatic animals. These Gram-negative bacteria, including the species Vibrio vulnificus, Vibrio parahaemolyticus and Vibrio cholerae, grow in warm, low-salinity waters, and their abundance in the natural environment mirrors ambient environmental temperatures...
January 2017: Trends in Microbiology
Nelson Jorge Carvalho Batista, Ana Amélia de Carvalho Melo Cavalcante, Maria Geci de Oliveira, Eugênia Cristina Nascimento Medeiros, Joseane Lustosa Machado, Sebastiana Ribeiro Evangelista, Johnny F Dias, Carla E I Dos Santos, Anaí Duarte, Fernanda R da Silva, Juliana da Silva
Pollution of aquatic ecosystems is associated with the discharge of mostly industrial and urban effluents, which may cause loss of biodiversity and damage to public health. This study aims to evaluate the toxicity and mutagenicity of water samples collected in the Corrente River, a major waterway in the river basin district of Pedro II, Piauí (Brazil). This river is exposed to intense anthropogenic influence from urban, automotive mechanical and family farm waste, and it is used as the main source of water supply by the population...
December 2016: Chemosphere
Sára Szuróczki, Zsuzsa Kéki, Szandra Káli, Anett Lippai, Károly Márialigeti, Erika Tóth
Thermal baths are unique aquatic environments combining a wide variety of natural and anthropogenic ecological factors, which also appear in their microbiological state. There is limited information on the microbiology of thermal baths in their complexity, tracking community shifts from the thermal wells to the pools. In the present study, the natural microbial community of well and pool waters in Gellért bath was studied in detail by cultivation-based techniques. To isolate bacteria, 10% R2A and minimal synthetic media (with "bath water") with agar-agar and gellan gum were used after prolonged incubation time; moreover, polyurethane blocks covered with media were also applied...
June 2016: Acta Microbiologica et Immunologica Hungarica
Douglas Sackett
No abstract text is available yet for this article.
May 2016: Journal of Environmental Health
Katelyn Turpin-Nagel, Timothy M Vadas
Streams in urban ecosystems receive metal inputs primarily from stormwater runoff and wastewater effluent. The relative contribution of these metal sources to stream impairment is difficult to discern based on simple water characteristics and biological surveys. Stream impairment in these systems is often indicated by reduced abundance and diversity of aquatic insects, which tend to be more sensitive to chronic metal exposures. Metal species and controls on metal species in both the waterborne and dietborne exposure pathways to aquatic organisms are reviewed here...
August 10, 2016: Environmental Science. Processes & Impacts
Alba Puig, Héctor F Olguín Salinas, Juan A Borús
Alterations in flow regimes of large rivers may originate or increase risks to ecosystems and humans. The Paraná River basin (South America) undergoes human pressures (e.g., heavy damming in the upper basin, deforestation, and mixed pollution) that may affect the water quantity and quality of its terminal Delta (Argentina). In this study, after applying univariate and multivariate change-point detection and trend analyses to the daily data series of flows incoming to the Delta (Paraná-Santa Fe section), flow characteristics were compared by Indicators of Hydrologic Alteration (IHA) and Environmental Flow Components (EFC)...
June 2016: Environmental Science and Pollution Research International
M Zemann, M Majewsky, L Wolf
Intense reuse of treated wastewater in agriculture is practiced all over the world, especially in arid and water-scarce regions. In doing so, pharmaceutical residues in the water are irrigated to the soil and subsequently can percolate into the local aquifers. Since evaporation rates in these areas are typically high, persistent substances might enrich in the groundwater recharge of closed catchments like the Jordan Valley. Against this background, unsaturated column tests were conducted to investigate the potential for evaporative accumulation of the two pharmaceuticals bezafibrate and carbamazepine under simulated arid climate conditions...
July 2016: Chemosphere
Nikea Ulrich, Abigail Rosenberger, Colin Brislawn, Justin Wright, Collin Kessler, David Toole, Caroline Solomon, Steven Strutt, Erin McClure, Regina Lamendella
UNLABELLED: Bacterial community composition and longitudinal fluctuations were monitored in a riverine system during and after Superstorm Sandy to better characterize inter- and intracommunity responses associated with the disturbance associated with a 100-year storm event. High-throughput sequencing of the 16S rRNA gene was used to assess microbial community structure within water samples from Muddy Creek Run, a second-order stream in Huntingdon, PA, at 12 different time points during the storm event (29 October to 3 November 2012) and under seasonally matched baseline conditions...
June 15, 2016: Applied and Environmental Microbiology
Wenkai Yan, Xiang Xiao, Yu Zhang
Sporosarcina psychrophila DSM 6497 is a gram positive, spore-formation psychrophilic bacterial strain, widely distributed in terrestrial and aquatic environments. Here we report its complete sequence including one circular chromosome of 4674191bp with a GC content of 40.3%. Genes encoding urease are predicted in the genome, which provide insight information on the microbiologically mediated urea hydrolysis process. This urea hydrolysis can further lead to an increase of carbonate anion and alkalinity in the environment, which promotes the microbiologically induced carbonate precipitation with various applications, such as the bioremediation of calcium rich wastewater and bio-reservation of architectural patrimony...
May 20, 2016: Journal of Biotechnology
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