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https://www.readbyqxmd.com/read/27920782/acclimation-of-biochemical-and-diffusive-components-of-photosynthesis-in-rice-wheat-and-maize-to-heat-and-water-deficit-implications-for-modeling-photosynthesis
#1
Juan A Perdomo, Elizabete Carmo-Silva, Carmen Hermida-Carrera, Jaume Flexas, Jeroni Galmés
The impact of the combined effects of heat stress, increased vapor pressure deficit (VPD) and water deficit on the physiology of major crops needs to be better understood to help identifying the expected negative consequences of climate change and heat waves on global agricultural productivity. To address this issue, rice, wheat, and maize plants were grown under control temperature (CT, 25°C, VPD 1.8 kPa), and a high temperature (HT, 38°C, VPD 3.5 kPa), both under well-watered (WW) and water deficit (WD) conditions...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27920780/genome-enabled-prediction-models-for-yield-related-traits-in-chickpea
#2
Manish Roorkiwal, Abhishek Rathore, Roma R Das, Muneendra K Singh, Ankit Jain, Samineni Srinivasan, Pooran M Gaur, Bharadwaj Chellapilla, Shailesh Tripathi, Yongle Li, John M Hickey, Aaron Lorenz, Tim Sutton, Jose Crossa, Jean-Luc Jannink, Rajeev K Varshney
Genomic selection (GS) unlike marker-assisted backcrossing (MABC) predicts breeding values of lines using genome-wide marker profiling and allows selection of lines prior to field-phenotyping, thereby shortening the breeding cycle. A collection of 320 elite breeding lines was selected and phenotyped extensively for yield and yield related traits at two different locations (Delhi and Patancheru, India) during the crop seasons 2011-12 and 2012-13 under rainfed and irrigated conditions. In parallel, these lines were also genotyped using DArTseq platform to generate genotyping data for 3000 polymorphic markers...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27917188/crispr-cas9-tool-for-qualitative-and-quantitative-plant-genome-editing
#3
REVIEW
Ali Noman, Muhammad Aqeel, Shuilin He
Recent developments in genome editing techniques have aroused substantial excitement among agricultural scientists. These techniques offer new opportunities for developing improved plant lines with addition of important traits or removal of undesirable traits. Increased adoption of genome editing has been geared by swiftly developing Clustered regularly interspaced short palindromic repeats (CRISPR). This is appearing as driving force for innovative utilization in diverse branches of plant biology. CRISPR-Cas9 mediated genome editing is being used for rapid, easy and efficient alteration of genes among diverse plant species...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27917185/fire-and-brimstone-molecular-interactions-between-sulfur-and-glucosinolate-biosynthesis-in-model-and-crop-brassicaceae
#4
REVIEW
Priyakshee Borpatragohain, Terry J Rose, Graham J King
Glucosinolates (GSLs) represent one of the most widely studied classes of plant secondary metabolite, and have a wide range of biological activities. Their unique properties also affect livestock and human health, and have been harnessed for food and other end-uses. Since GSLs are sulfur (S)-rich there are many lines of evidence suggesting that plant S status plays a key role in determining plant GSL content. However, there is still a need to establish a detailed knowledge of the distribution and remobilization of S and GSLs throughout the development of Brassica crops, and to represent this in terms of primary and secondary sources and sinks...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27917184/studying-secondary-growth-and-bast-fiber-development-the-hemp-hypocotyl-peeks-behind-the-wall
#5
Marc Behr, Sylvain Legay, Eva Žižková, Václav Motyka, Petre I Dobrev, Jean-Francois Hausman, Stanley Lutts, Gea Guerriero
Cannabis sativa L. is an annual herbaceous crop grown for the production of long extraxylary fibers, the bast fibers, rich in cellulose and used both in the textile and biocomposite sectors. Despite being herbaceous, hemp undergoes secondary growth and this is well exemplified by the hypocotyl. The hypocotyl was already shown to be a suitable model to study secondary growth in other herbaceous species, namely Arabidopsis thaliana and it shows an important practical advantage, i.e., elongation and radial thickening are temporally separated...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27917017/determination-of-coefficient-defining-leaf-area-development-in-different-genotypes-plant-types-and-planting-densities-in-peanut-arachis-hypogeae-l
#6
Oumarou Halilou, Halime Mahamat Hissene, José A Clavijo Michelangeli, Falalou Hamidou, Thomas R Sinclair, Afshin Soltani, Saadou Mahamane, Vincent Vadez
Rapid leaf area development may be attractive under a number of cropping conditions to enhance the vigor of crop establishment and allow rapid canopy closure for maximizing light interception and shading of weed competitors. This study was undertaken to determine (1) if parameters describing leaf area development varied among ten peanut (Arachis hypogeae L.) genotypes grown in field and pot experiments, (2) if these parameters were affected by the planting density, and (3) if these parameters varied between Spanish and Virginia genotypes...
December 2016: Field Crops Research
https://www.readbyqxmd.com/read/27916298/uncertainty-of-current-understanding-regarding-obt-formation-in-plants
#7
A Melintescu, D Galeriu
Radiological impact models are important tools that support nuclear safety. For tritium, a special radionuclide that readily enters the life cycle, the processes involved in its transport into the environment are complex and inadequately understood. For example, tritiated water (HTO) enters plants by leaf and root uptake and is converted to organically bound tritium (OBT) in exchangeable and non-exchangeable forms; however, the observed OBT/HTO ratios in crops exhibit large variability and contradict the current models for routine releases...
December 1, 2016: Journal of Environmental Radioactivity
https://www.readbyqxmd.com/read/27914641/reduction-of-neonicotinoid-insecticide-residues-in-prairie-wetlands-by-common-wetland-plants
#8
Anson R Main, Jessica Fehr, Karsten Liber, John V Headley, Kerry M Peru, Christy A Morrissey
Neonicotinoid insecticides are frequently detected in wetlands during the early to mid-growing period of the Canadian Prairie cropping season. These detections also overlap with the growth of macrophytes that commonly surround agricultural wetlands which we hypothesized may reduce neonicotinoid transport and retention in wetlands. We sampled 20 agricultural wetlands and 11 macrophyte species in central Saskatchewan, Canada, over eight weeks to investigate whether macrophytes were capable of reducing movement of neonicotinoids from cultivated fields and/or reducing concentrations in surface water by accumulating insecticide residues into their tissues...
November 30, 2016: Science of the Total Environment
https://www.readbyqxmd.com/read/27913282/proteomics-provides-insights-into-biological-pathways-altered-by-plant-growth-promoting-bacteria-and-arbuscular-mycorrhiza-in-sorghum-grown-in-marginal-soil
#9
Faten Dhawi, Rupali Datta, Wusirika Ramakrishna
Sorghum is an economically important crop, a model system for gene discovery and a biofuel source. Sorghum seedlings were subjected to three microbial treatments, plant growth promoting bacteria (B), arbuscular mycorrhizal (AM) fungi mix with two Glomus species (G. aggregatum and G. etunicatum), Funelliformis mosseae and Rhizophagus irregularis (My), and B and My combined (My+B). Proteomic analysis was conducted followed by integration with metabolite, plant biomass and nutrient data. Out of 366 differentially expressed proteins in sorghum roots, 44 upregulated proteins overlapping among three treatment groups showed positive correlation with sorghum biomass or element uptake or both...
November 29, 2016: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/27909573/how-to-put-plant-root-uptake-into-a-soil-water-flow-model-a-documentation-with-complete-computer-code
#10
Xuejun Dong
The need for improved crop water use efficiency calls for flexible modeling platforms to implement new ideas in plant root uptake and its regulation mechanisms. This paper documents the details of modifying a soil infiltration and redistribution model to include (a) dynamic root growth, (b) non-uniform root distribution and water uptake, (c) the effect of water stress on plant water uptake, and (d) soil evaporation. The paper also demonstrates strategies of using the modified model to simulate soil water dynamics and plant transpiration considering different sensitivity of plants to soil dryness and different mechanisms of root water uptake...
2016: F1000Research
https://www.readbyqxmd.com/read/27908625/a-novel-integrated-modelling-framework-to-assess-the-impacts-of-climate-and-socio-economic-drivers-on-land-use-and-water-quality
#11
Matthias Zessner, Martin Schönhart, Juraj Parajka, Helene Trautvetter, Hermine Mitter, Mathias Kirchner, Gerold Hepp, Alfred Paul Blaschke, Birgit Strenn, Erwin Schmid
Changes in climatic conditions will directly affect the quality and quantity of water resources. Further on, they will affect them indirectly through adaptation in land use which ultimately influences diffuse nutrient emissions to rivers and therefore potentially the compliance with good ecological status according to the EU Water Framework Directive (WFD). We present an integrated impact modelling framework (IIMF) to track and quantify direct and indirect pollution impacts along policy-economy-climate-agriculture-water interfaces...
November 28, 2016: Science of the Total Environment
https://www.readbyqxmd.com/read/27907196/the-potential-for-conservation-tillage-adoption-in-the-san-joaquin-valley-california-a-qualitative-study-of-farmer-perspectives-and-opportunities-for-extension
#12
Anne V Bossange, Kandace M Knudson, Anil Shrestha, Ronald Harben, Jeffrey P Mitchell
Conservation tillage (CT) systems have a number of potential benefits including lower crop production costs and the ability to reduce soil erosion that have made them common in several regions of the world. Although CT systems have been researched and successfully implemented on some farms in California's San Joaquin Valley (SJV), overall adoption is low and the reasons for the region's comparatively low rates of adoption are not known. In 2011, we conducted written surveys and interviews with SJV farmers to identify characteristics of farmers who adopt or do not adopt CT, to determine reasons for non-adoption of CT, and to learn how successful CT adoption takes place in the SJV...
2016: PloS One
https://www.readbyqxmd.com/read/27907101/economic-and-environmental-impact-of-rice-blast-pathogen-magnaporthe-oryzae-alleviation-in-the-united-states
#13
Lawton Nalley, Francis Tsiboe, Alvaro Durand-Morat, Aaron Shew, Greg Thoma
Rice blast (Magnaporthe oryzae) is a key concern in combating global food insecurity given the disease is responsible for approximately 30% of rice production losses globally-the equivalent of feeding 60 million people. These losses increase the global rice price and reduce consumer welfare and food security. Rice is the staple crop for more than half the world's population so any reduction in rice blast would have substantial beneficial effects on consumer livelihoods. In 2012, researchers in the US began analyzing the feasibility of creating blast-resistant rice through cisgenic breeding...
2016: PloS One
https://www.readbyqxmd.com/read/27905512/plant-phenolic-volatiles-inhibit-quorum-sensing-in-pectobacteria-and-reduce-their-virulence-by-potential-binding-to-expi-and-expr-proteins
#14
Janak Raj Joshi, Netaly Khazanov, Hanoch Senderowitz, Saul Burdman, Alexander Lipsky, Iris Yedidia
Quorum sensing (QS) is a population density-dependent regulatory system in bacteria that couples gene expression to cell density through accumulation of diffusible signaling molecules. Pectobacteria are causal agents of soft rot disease in a range of economically important crops. They rely on QS to coordinate their main virulence factor, production of plant cell wall degrading enzymes (PCWDEs). Plants have evolved an array of antimicrobial compounds to anticipate and cope with pathogens, of which essential oils (EOs) are widely recognized...
December 1, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27902790/accuracy-of-genomic-prediction-in-a-commercial-perennial-ryegrass-breeding-program
#15
Dario Fè, Bilal H Ashraf, Morten G Pedersen, Luc Janss, Stephen Byrne, Niels Roulund, Ingo Lenk, Thomas Didion, Torben Asp, Christian S Jensen, Just Jensen
The implementation of genomic selection (GS) in plant breeding, so far, has been mainly evaluated in crops farmed as homogeneous varieties, and the results have been generally positive. Fewer results are available for species, such as forage grasses, that are grown as heterogenous families (developed from multiparent crosses) in which the control of the genetic variation is far more complex. Here we test the potential for implementing GS in the breeding of perennial ryegrass ( L.) using empirical data from a commercial forage breeding program...
November 2016: Plant Genome
https://www.readbyqxmd.com/read/27902726/a-landscape-view-of-agricultural-insecticide-use-across-the-conterminous-us-from-1997-through-2012
#16
Timothy D Meehan, Claudio Gratton
Simplification of agricultural landscapes is expected to have positive effects on many crop pests and negative effects on their natural enemies, potentially leading to increased pest pressure, decreased crop yield, and increased insecticide use. While many intermediate links in this causal chain have empirical support, there is mixed evidence for ultimate relationships between landscape simplification, crop yield, and insecticide use, especially at large spatial and temporal scales. We explored relationships between landscape simplification (proportion of a county in harvested cropland) and insecticide use (proportion of harvested cropland treated with insecticides), using county-level data from the US Census of Agriculture and a variety of standard and spatiotemporal regression techniques...
2016: PloS One
https://www.readbyqxmd.com/read/27900655/monitoring-and-assessment-of-soil-erosion-at-micro-scale-and-macro-scale-in-forests-affected-by-fire-damage-in-northern-iran
#17
Ali Akbarzadeh, Shoja Ghorbani-Dashtaki, Mehdi Naderi-Khorasgani, Ruth Kerry, Ruhollah Taghizadeh-Mehrjardi
Understanding the occurrence of erosion processes at large scales is very difficult without studying them at small scales. In this study, soil erosion parameters were investigated at micro-scale and macro-scale in forests in northern Iran. Surface erosion and some vegetation attributes were measured at the watershed scale in 30 parcels of land which were separated into 15 fire-affected (burned) forests and 15 original (unburned) forests adjacent to the burned sites. The soil erodibility factor and splash erosion were also determined at the micro-plot scale within each burned and unburned site...
December 2016: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/27898827/identification-of-genomic-loci-associated-with-the-photochemical-reflectance-index-by-genome-wide-association-study-in-soybean
#18
Matthew Herritt, Arun Prabhu Dhanapal, Felix B Fritschi
The photochemical reflectance index (PRI) is determined from canopy spectral reflectance measurements and can provide important information about photosynthesis. The PRI can be used to assess the epoxidation state of xanthophyll pigments, which provides information on nonphotochemical quenching (NPQ) and the amount of energy used for photosynthesis. Genome-wide association analyses were conducted to identify single-nucleotide polymorphisms (SNPs) and genomic loci associated with PRI using data from a soybean [ (L...
July 2016: Plant Genome
https://www.readbyqxmd.com/read/27898819/genotyping-by-sequencing-analysis-for-determining-population-structure-of-finger-millet-germplasm-of-diverse-origins
#19
Anil Kumar, Divya Sharma, Apoorv Tiwari, J P Jaiswal, N K Singh, Salej Sood
Finger millet [ (L.) Gaertn.] is grown mainly by subsistence farmers in arid and semiarid regions of the world. To broaden its genetic base and to boost its production, it is of paramount importance to characterize and genotype the diverse gene pool of this important food and nutritional security crop. However, as a result of nonavailability of the genome sequence of finger millet, the progress could not be made in realizing the molecular basis of unique qualities of the crop. In the present investigation, attempts have been made to characterize the genetically diverse collection of 113 finger millet accessions through whole-genome genotyping-by-sequencing (GBS), which resulted in a genome-wide set of 23,000 single-nucleotide polymorphisms (SNPs) segregating across the entire collection and several thousand SNPs segregating within every accession...
July 2016: Plant Genome
https://www.readbyqxmd.com/read/27898792/soybean-area-and-baseflow-driving-nitrate-in-iowa-s-raccoon-river
#20
Gabriele Villarini, Christopher S Jones, Keith E Schilling
Improved understanding of the drivers of stream nitrate is necessary to improve water quality. This is particularly true for Iowa, a large contributor to Mississippi River Basin nitrate loads. Here, we focus on the Raccoon River at Des Moines, Iowa, and develop statistical models to describe the monthly (from March to August) nitrate concentrations in terms of eight drivers representing monthly climate, monthly hydrology, and yearly cropping practices. We consider six two-parameter distributions, linear and nonlinear dependencies between the predictors, and the distributions' parameters...
November 2016: Journal of Environmental Quality
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