keyword
MENU ▼
Read by QxMD icon Read
search

Crop model

keyword
https://www.readbyqxmd.com/read/28439083/a-novel-way-to-establish-fertilization-recommendations-based-on-agronomic-efficiency-and-a-sustainable-yield-index-for-rice-crops
#1
Chuang Liu, Yi Liu, Zhiguo Li, Guoshi Zhang, Fang Chen
A simpler approach for establishing fertilizer recommendations for major crops is urgently required to improve the application efficiency of commercial fertilizers in China. To address this need, we developed a method based on field data drawn from the China Program of the International Plant Nutrition Institute (IPNI) rice experiments and investigations carried out in southeastern China during 2001 to 2012. Our results show that, using agronomic efficiencies and a sustainable yield index (SYI), this new method for establishing fertilizer recommendations robustly estimated the mean rice yield (7...
April 24, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28437594/a-mesoamerican-origin-of-cherimoya-annona-cherimola-mill-implications-for-the-conservation-of-plant-genetic-resources
#2
N Larranaga, F J Albertazzi, G Fontecha, M Palmieri, H Rainer, M van Zonneveld, J I Hormaza
Knowledge on the structure and distribution of genetic diversity is a key aspect in order to plan and execute an efficient conservation and utilization of the genetic resources of any crop as well as for determining historical demographic inferences. In this work, a large data set of 1765 accessions of cherimoya (Annona cherimola Mill, Annonaceae), an underutilized fruit tree crop native to the neotropics and used as a food source by pre-Columbian cultures, was collected from 6 different countries across the American continent and amplified with 9 highly informative microsatellite markers...
April 24, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28432936/the-immunosuppressive-characteristics-of-fb1-by-inhibition-of-maturation-and-function-of-bmdcs
#3
Yinhuan Li, Yanhong Fan, Bingbing Xia, Qiuping Xiao, Qingqing Wang, Weidong Sun, Haibin Zhang, Chenghua He
Fumonisin B1 (FB1) is one kind of mycotoxins that has the neurotoxicity, carcinogenicity, hepatotoxicity and immunotoxicity produced by the fungus Fusarium verticillioides, which commonly infects corn and other crops and is harmful to animal and human health upon consumption of FB1-contaminated feed or food. However, the mechanism of immunotoxicity, especially the immunosuppression induced by FB1 is still unclear. The most pivotal cells in the induction of immune responses are dendritic cells (DCs). In this study, we used murine bone marrow-derived dendritic cells (BMDCs) as a model system to elucidate the effect of FB1 on the function of BMDCs through biological methods...
April 19, 2017: International Immunopharmacology
https://www.readbyqxmd.com/read/28432729/novel-amino-acid-ester-chlorantraniliprole-conjugates-design-synthesis-phloem-accumulation-and-bioactivity
#4
Guangkai Yao, Yingjie Wen, Chen Zhao, Hanhong Xu
BACKGROUND: Conjugating amino acid and glucose fragments with existed pesticide structures has been proven to be an effective way to introduce phloem mobility to non-phloem mobile species. However, the resulting derivatives always suffered from lower bioactivity compared to their parent compound. To solve this problem, herein, we designed and synthesized a series of ester-capped amino acid conjugated chlorantraniliprole. RESULTS: The systemic test showed that all conjugates exhibited excellent phloem mobility and xylem mobility in a Ricinus communis model...
April 22, 2017: Pest Management Science
https://www.readbyqxmd.com/read/28432094/the-use-of-synthetic-hybrid-strains-to-determine-the-role-of-replicon-3-in-virulence-of-the-burkholderia-cepacia-complex
#5
Kirsty Agnoli, Roman Freitag, Margarida C Gomes, Christian Jenul, Angela Suppiger, Olga Mannweiler, Carmen Frauenknecht, Daniel Janser, Annette C Vergunst, Leo Eberl
The Burkholderia cepacia complex (Bcc) displays a wealth of metabolic diversity with great biotechnological potential, but the utilisation of these bacteria is limited by their opportunistic pathogenicity to humans. The third replicon of the Bcc, megaplasmid pC3 (0.5 to 1.4 Mb, previously chromosome 3), is important for various phenotypes, including virulence, antifungal and proteolytic activities, and the utilization of certain substrates. Approximately half of plasmid pC3 is well-conserved throughout sequenced Bcc members, while the other half is not...
April 21, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28430356/crispr-cas9-an-rna-guided-highly-precise-synthetic-tool-for-plant-genome-editing
#6
REVIEW
Yeliz Demirci, Baohong Zhang, Turgay Unver
CRISPR/Cas 9 is a newly developed and naturally occurred genome editing tool, which is originally used by bacteria for immune defence. In the past years, it has been quickly employed and modified to precisely edit genome sequences in both plants and animals. Compared with the well-developed zinc finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs), CRISPR/Cas 9 has lots of advantages, including easier to design and implement, higher targeting efficiency, and less expensive. Thus, it is becoming one of the most powerful tools for knockout of an individual gene as well as insertion of one gene and/or control of gene transcription...
April 21, 2017: Journal of Cellular Physiology
https://www.readbyqxmd.com/read/28428846/long-term-and-widespread-changes-in-agricultural-practices-influence-ring-necked-pheasant-abundance-in-california
#7
Peter S Coates, Brianne E Brussee, Kristy B Howe, Joseph P Fleskes, Ian A Dwight, Daniel P Connelly, Matt G Meshriy, Scott C Gardner
Declines in bird populations in agricultural regions of North America and Europe have been attributed to agricultural industrialization, increases in use of agrochemical application, and increased predation related to habitat modification. Based on count data compiled from Breeding Bird Survey (BBS) from 1974 to 2012, Christmas Bird Count (CBC) collected from 1914 to 2013, and hunter data from Annual Game Take Survey (AGTS) for years 1948-2010, ring-necked pheasants (Phasianus colchicus) in California have experienced substantial declines in agricultural environments...
April 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28422697/manifold-regularized-correlation-object-tracking
#8
Hongwei Hu, Bo Ma, Jianbing Shen, Ling Shao
In this paper, we propose a manifold regularized correlation tracking method with augmented samples. To make better use of the unlabeled data and the manifold structure of the sample space, a manifold regularization-based correlation filter is introduced, which aims to assign similar labels to neighbor samples. Meanwhile, the regression model is learned by exploiting the block-circulant structure of matrices resulting from the augmented translated samples over multiple base samples cropped from both target and nontarget regions...
April 12, 2017: IEEE Transactions on Neural Networks and Learning Systems
https://www.readbyqxmd.com/read/28421861/the-plant-dependent-life-cycle-of-thecaphora-thlaspeos-a-smut-fungus-adapted-to-brassicaceae
#9
Lamprinos Frantzeskakis, Kaitlyn J Courville, Lesley Plücker, Ronny Kellner, Julia Kruse, Andreas Brachmann, Michael Feldbrügge, Vera Göhre
Smut fungi are globally distributed plant pathogens that infect agriculturally important crop plants such as maize or potato. To date, molecular studies on plant responses to smut fungi are challenging due to the genetic complexity of their host plants. Therefore, we set out to investigate the known smut fungus of Brassicaceae hosts, Thecaphora thlaspeos. T. thlaspeos infects different Brassicaceae plant species throughout Europe, including the perennial model plant Arabis alpina. In contrast to characterized smut fungi, mature and dry T...
April 19, 2017: Molecular Plant-microbe Interactions: MPMI
https://www.readbyqxmd.com/read/28421330/regulation-of-coniferaldehyde-5-hydroxylase-expression-to-modulate-cell-wall-lignin-structure-in-rice
#10
Yuri Takeda, Taichi Koshiba, Yuki Tobimatsu, Shiro Suzuki, Shinya Murakami, Masaomi Yamamura, Md Mahabubur Rahman, Toshiyuki Takano, Takefumi Hattori, Masahiro Sakamoto, Toshiaki Umezawa
Regulation of a gene encoding coniferaldehyde 5-hydroxylase leads to substantial alterations in lignin structure in rice cell walls, identifying a promising genetic engineering target for improving grass biomass utilization. The aromatic composition of lignin greatly affects utilization characteristics of lignocellulosic biomass and, therefore, has been one of the primary targets of cell wall engineering studies. Limited information is, however, available regarding lignin modifications in monocotyledonous grasses, despite the fact that grass lignocelluloses have a great potential for feedstocks of biofuel production and various biorefinery applications...
April 18, 2017: Planta
https://www.readbyqxmd.com/read/28421084/characterization-of-the-heme-pocket-structure-and-ligand-binding-kinetics-of-non-symbiotic-hemoglobins-from-the-model-legume-lotus-japonicus
#11
Laura Calvo-Begueria, Bert Cuypers, Sabine Van Doorslaer, Stefania Abbruzzetti, Stefano Bruno, Herald Berghmans, Sylvia Dewilde, Javier Ramos, Cristiano Viappiani, Manuel Becana
Plant hemoglobins (Hbs) are found in nodules of legumes and actinorhizal plants but also in non-symbiotic organs of monocots and dicots. Non-symbiotic Hbs (nsHbs) have been classified into two phylogenetic groups. Class 1 nsHbs show an extremely high O2 affinity and are induced by hypoxia and nitric oxide (NO), whereas class 2 nsHbs have moderate O2 affinity and are induced by cold and cytokinins. The functions of nsHbs are still unclear, but some of them rely on the capacity of hemes to bind diatomic ligands and catalyze the NO dioxygenase (NOD) reaction (oxyferrous Hb + NO → ferric Hb + nitrate)...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28420692/an-improved-assembly-and-annotation-of-the-allohexaploid-wheat-genome-identifies-complete-families-of-agronomic-genes-and-provides-genomic-evidence-for-chromosomal-translocations
#12
Bernardo J Clavijo, Luca Venturini, Christian Schudoma, Gonzalo Garcia Accinelli, Gemy Kaithakottil, Jonathan Wright, Philippa Borrill, George Kettleborough, Darren Heavens, Helen Chapman, James Lipscombe, Tom Barker, Fu-Hao Lu, Neil McKenzie, Dina Raats, Ricardo H Ramirez-Gonzalez, Aurore Coince, Ned Peel, Lawrence Percival-Alwyn, Owen Duncan, Josua Trösch, Guotai Yu, Dan M Bolser, Guy Namaati, Arnaud Kerhornou, Manuel Spannagl, Heidrun Gundlach, Georg Haberer, Robert P Davey, Christine Fosker, Federica Di Palma, Andrew Phillips, A Harvey Millar, Paul J Kersey, Cristobal Uauy, Ksenia V Krasileva, David Swarbreck, Michael W Bevan, Matthew D Clark
Advances in genome sequencing and assembly technologies are generating many high-quality genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as that of bread wheat, remain fragmented and incomplete. We have generated a new wheat whole-genome shotgun sequence assembly using a combination of optimized data types and an assembly algorithm designed to deal with large and complex genomes. The new assembly represents >78% of the genome with a scaffold N50 of 88.8 kb that has a high fidelity to the input data...
April 18, 2017: Genome Research
https://www.readbyqxmd.com/read/28420345/selective-sweep-with-significant-positive-selection-serves-as-the-driving-force-for-the-differentiation-of-japonica-and-indica-rice-cultivars
#13
Yang Yuan, Qijun Zhang, Shuiyun Zeng, Longjiang Gu, Weina Si, Xiaohui Zhang, Dacheng Tian, Sihai Yang, Long Wang
BACKGROUND: Asian cultivated rice (Oryza sativa L.), including japonica and indica, is unarguable the most important crop in Asia as well as worldwide. However, a decisive conclusion of its origination and domestication processes are still lacking. Nowadays, the ever-increasing high-throughput sequencing data of numerous rice samples have provided us new opportunities to get close to the answer of these questions. RESULTS: By compiling 296 whole-genome sequenced rice cultivars and 39 diverse wild rice, two types of domesticated regions (DR-I and DR-II) with strong selective sweep signals between different groups were detected...
April 19, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28419907/flc-expression-is-down-regulated-by-cold-treatment-in-diplotaxis-tenuifolia-wild-rocket-but-flowering-time-is-unaffected
#14
Jemma L Taylor, Andrea Massiah, Sue Kennedy, Yiguo Hong, Stephen D Jackson
Wild rocket (Diplotaxis tenuifolia) has become a very popular salad leaf due to its peppery taste. It is part of the Brassicaceae family and thus has a high level of homology at the DNA level to other Brassica species including Arabidopsis thaliana. The vernalization and photoperiodic requirements of wild rocket have not been reported to date. Photoperiodic experiments described here demonstrate that rocket is a facultative long day plant. To investigate the vernalization requirement, both seed and young plants were given vernalization treatments at 4°C for different lengths of time...
March 28, 2017: Journal of Plant Physiology
https://www.readbyqxmd.com/read/28418381/sparse-panicle1-is-required-for-inflorescence-development-in-setaria-viridis-and-maize
#15
Pu Huang, Hui Jiang, Chuanmei Zhu, Kerrie Barry, Jerry Jenkins, Laura Sandor, Jeremy Schmutz, Mathew S Box, Elizabeth A Kellogg, Thomas P Brutnell
Setaria viridis is a rapid-life-cycle model panicoid grass. To identify genes that may contribute to inflorescence architecture and thus have the potential to influence grain yield in related crops such as maize, we conducted an N-nitroso-N-methylurea (NMU) mutagenesis of S. viridis and screened for visible inflorescence mutant phenotypes. Of the approximately 2,700 M2 families screened, we identified four recessive sparse panicle mutants (spp1-spp4) characterized by reduced and uneven branching of the inflorescence...
April 18, 2017: Nature Plants
https://www.readbyqxmd.com/read/28418069/genetic-control-of-plasticity-of-oil-yield-for-combined-abiotic-stresses-using-a-joint-approach-of-crop-modeling-and-genome-wide-association
#16
Brigitte Mangin, Pierre Casadebaig, Eléna Cadic, Nicolas Blanchet, Marie-Claude Boniface, Sébastien Carrère, Jérôme Gouzy, Ludovic Legrand, Baptiste Mayjonade, Nicolas Pouilly, Thierry André, Marie Coque, Joël Piquemal, Marion Laporte, Patrick Vincourt, Stéphane Muños, Nicolas B Langlade
Understanding the genetic basis of phenotypic plasticity is crucial for predicting and managing climate change effects on wild plants and crops. Here, we combined crop modeling and quantitative genetics to study the genetic control of oil yield plasticity for multiple abiotic stresses in sunflower. First we developed stress indicators to characterize 14 environments for three abiotic stresses (cold, drought and nitrogen) using the SUNFLO crop model and phenotypic variations of three commercial varieties. The computed plant stress indicators better explain yield variation than descriptors at the climatic or crop levels...
April 18, 2017: Plant, Cell & Environment
https://www.readbyqxmd.com/read/28413251/food-price-seasonality-in-africa-measurement-and-extent
#17
Christopher L Gilbert, Luc Christiaensen, Jonathan Kaminski
Everyone knows about seasonality. But what exactly do we know? This study systematically measures seasonal price gaps at 193 markets for 13 food commodities in seven African countries. It shows that the commonly used dummy variable or moving average deviation methods to estimate the seasonal gap can yield substantial upward bias. This can be partially circumvented using trigonometric and sawtooth models, which are more parsimonious. Among staple crops, seasonality is highest for maize (33 percent on average) and lowest for rice (16½ percent)...
February 2017: Food Policy
https://www.readbyqxmd.com/read/28408910/new-hypervariable-ssr-markers-for-diversity-analysis-hybrid-purity-testing-and-trait-mapping-in-pigeonpea-cajanus-cajan-l-millspaugh
#18
Abhishek Bohra, Rintu Jha, Gaurav Pandey, Prakash G Patil, Rachit K Saxena, Indra P Singh, D Singh, R K Mishra, Ankita Mishra, F Singh, Rajeev K Varshney, N P Singh
Draft genome sequence in pigeonpea offers unprecedented opportunities for genomics assisted crop improvement via enabling access to genome-wide genetic markers. In the present study, 421 hypervariable simple sequence repeat (SSR) markers from the pigeonpea genome were screened on a panel of eight pigeonpea genotypes yielding marker validation and polymorphism percentages of 95.24 and 54.11%, respectively. The SSR marker assay uncovered a total of 570 alleles with three as an average number of alleles per marker...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28406987/arabidopsis-leucine-rich-repeat-receptor-like-kinase-nilr1-is-required-for-induction-of-innate-immunity-to-parasitic-nematodes
#19
Badou Mendy, Mary Wanjiku Wang'ombe, Zoran S Radakovic, Julia Holbein, Muhammad Ilyas, Divykriti Chopra, Nick Holton, Cyril Zipfel, Florian M W Grundler, Shahid Siddique
Plant-parasitic nematodes are destructive pests causing losses of billions of dollars annually. An effective plant defence against pathogens relies on the recognition of pathogen-associated molecular patterns (PAMPs) by surface-localised receptors leading to the activation of PAMP-triggered immunity (PTI). Extensive studies have been conducted to characterise the role of PTI in various models of plant-pathogen interactions. However, far less is known about the role of PTI in roots in general and in plant-nematode interactions in particular...
April 2017: PLoS Pathogens
https://www.readbyqxmd.com/read/28405770/comparing-mechanistic-and-empirical-approaches-to-modeling-the-thermal-niche-of-almond
#20
Lauren E Parker, John T Abatzoglou
Delineating locations that are thermally viable for cultivating high-value crops can help to guide land use planning, agronomics, and water management. Three modeling approaches were used to identify the potential distribution and key thermal constraints on on almond cultivation across the southwestern United States (US), including two empirical species distribution models (SDMs)-one using commonly used bioclimatic variables (traditional SDM) and the other using more physiologically relevant climate variables (nontraditional SDM)-and a mechanistic model (MM) developed using published thermal limitations from field studies...
April 12, 2017: International Journal of Biometeorology
keyword
keyword
11225
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"