keyword
MENU ▼
Read by QxMD icon Read
search

visual analytics

keyword
https://www.readbyqxmd.com/read/28637053/a-new-analytical-method-for-characterizing-nonlinear-visual-processes-with-stimuli-of-arbitrary-distribution-theory-and-applications
#1
Ryusuke Hayashi, Osamu Watanabe, Hiroki Yokoyama, Shin'ya Nishida
Characterization of the functional relationship between sensory inputs and neuronal or observers' perceptual responses is one of the fundamental goals of systems neuroscience and psychophysics. Conventional methods, such as reverse correlation and spike-triggered data analyses are limited in their ability to resolve complex and inherently nonlinear neuronal/perceptual processes because these methods require input stimuli to be Gaussian with a zero mean. Recent studies have shown that analyses based on a generalized linear model (GLM) do not require such specific input characteristics and have advantages over conventional methods...
June 1, 2017: Journal of Vision
https://www.readbyqxmd.com/read/28636592/quantifiable-predictive-features-define-epitope-specific-t-cell-receptor-repertoires
#2
Pradyot Dash, Andrew J Fiore-Gartland, Tomer Hertz, George C Wang, Shalini Sharma, Aisha Souquette, Jeremy Chase Crawford, E Bridie Clemens, Thi H O Nguyen, Katherine Kedzierska, Nicole L La Gruta, Philip Bradley, Paul G Thomas
T cells are defined by a heterodimeric surface receptor, the T cell receptor (TCR), that mediates recognition of pathogen-associated epitopes through interactions with peptide and major histocompatibility complexes (pMHCs). TCRs are generated by genomic rearrangement of the germline TCR locus, a process termed V(D)J recombination, that has the potential to generate marked diversity of TCRs (estimated to range from 10(15) (ref. 1) to as high as 10(61) (ref. 2) possible receptors). Despite this potential diversity, TCRs from T cells that recognize the same pMHC epitope often share conserved sequence features, suggesting that it may be possible to predictively model epitope specificity...
June 21, 2017: Nature
https://www.readbyqxmd.com/read/28631590/comparative-evaluation-of-veriflow-%C3%A2-salmonella-species-to-usda-and-fda-culture-based-methods-for-the-detection-of-salmonella-spp-in-food-and-environmental-samples
#3
Amrita Puri, Adam C Joelsson, Shawn P Terkhorn, Ashley S Brown, Zara E Gaudioso, Nicholas A Siciliano
Veriflow(®)Salmonella species (Veriflow SS)is a molecular-based assay for the presumptive detection of Salmonella spp. from environmental surfaces (stainless steel, sealed concrete, plastic, and ceramic tile), dairy (2% milk), raw meat (20% fat ground beef), chicken carcasses, and ready-to-eat (RTE) food (hot dogs). The assay utilizes a PCR detection method coupled with a rapid, visual, flow-based assay that develops in 3 min post-PCR amplification and requires only an 18 h enrichment for maximum sensitivity...
June 20, 2017: Journal of AOAC International
https://www.readbyqxmd.com/read/28631205/chemical-tongues-and-noses-based-upon-conjugated-polymers
#4
REVIEW
Jan Freudenberg, Felix Hinkel, Daniel Jänsch, Uwe H F Bunz
We report the uses of conjugated polymers in multisensory applications and in chemical and optoelectronic tongues. We look at the potential of single polymers to discriminate multiple analytes and into small libraries of conjugated polymers that represent sensors. These small libraries combine several barely selective, promiscuous sensor elements and react with the analytes in a fairly non-selective fashion by change of color, emission wavelength, or emission intensity. In such optoelectronic noses and tongues, response of a single element is not specific or particularly useful at all, but the response pattern after the combination of several sensor elements is often specific for an analyte and allows discrimination and identification without any problem...
August 2017: Topics in Current Chemistry (Journal)
https://www.readbyqxmd.com/read/28623862/stimuli-responsive-mof-with-chemo-switchable-properties-for-colorimetric-detection-of-chcl3
#5
Sayed Ali Akbar Razavi, Mohammad Yaser Masoomi, Ali Morsali
The ligands (3,6-di(pyridin-4-yl)-1,4-dihydro-1,2,4,5-tetrazine), H2DPT, as a pillar spacer and (4,4'-oxybis(benzoic acid)), H2OBA, as a dicarboxylate linker were used to develop a dihydro-tetrazine functionalized pillared-MOF, [Zn(OBA)(H2DPT)0.5].DMF (TMU-34) as functionally convertible stimuli responsive MOF-based Sensor. Sonochemically synthesized powder of TMU-34 was employed in sensing of volatile organic compounds (VOCs). The results show that TMU-34 can act as a solid state naked-eye visual chemosensor for detection of chloroform in liquid and gas phases...
June 17, 2017: Chemistry: a European Journal
https://www.readbyqxmd.com/read/28623653/miniaturized-temperature-controlled-planar-chromatography-micro-tlc-as-a-versatile-technique-for-fast-screening-of-micropollutants-and-biomarkers-derived-from-surface-water-ecosystems-and-during-technological-processes-of-wastewater-treatment
#6
Magdalena M Ślączka-Wilk, Elżbieta Włodarczyk, Aleksandra Kaleniecka, Paweł K Zarzycki
There is increasing interest in the development of simple analytical systems enabling the fast screening of target components in complex samples. A number of newly invented protocols are based on quasi separation techniques involving microfluidic paper-based analytical devices and/or micro total analysis systems. Under such conditions, the quantification of target components can be performed mainly due to selective detection. The main goal of this paper is to demonstrate that miniaturized planar chromatography has the capability to work as an efficient separation and quantification tool for the analysis of multiple targets within complex environmental samples isolated and concentrated using an optimized SPE method...
June 16, 2017: Journal of AOAC International
https://www.readbyqxmd.com/read/28617577/imaging-with-mass-spectrometry-of-bacteria-on-the-exoskeletons-of-fungus-growing-ants
#7
Erin Gemperline, Heidi A Horn, Kellen DeLaney, Cameron R Currie, Lingjun Li
Mass spectrometry imaging is a powerful analytical technique for detecting and determining spatial distributions of molecules within a sample. Typically mass spectrometry imaging is limited to the analysis of thin tissue sections taken from the middle of a sample. In this work, we present a mass spectrometry imaging method for the detection of compounds produced by bacteria on the outside surface of ant exoskeletons in response to pathogen exposure. Fungus-growing ants have a specialized mutualism with Pseudonocardia, a bacterium that lives on the ants' exoskeleton and helps protect their fungal garden food source from harmful pathogens...
June 15, 2017: ACS Chemical Biology
https://www.readbyqxmd.com/read/28613836/design-and-performance-of-a-novel-interface-for-combined-matrix-assisted-laser-desorption-ionization-at-elevated-pressure-and-electrospray-ionization-with-orbitrap-mass-spectrometry
#8
Mikhail E Belov, Shane R Ellis, Marialaura Dilillo, Martin R L Paine, William F Danielson, Gordon A Anderson, Eric L De Graaf, Gert B Eijkel, Ron M A Heeren, Liam A McDonnell
Matrix-Assisted Laser Desorption Ionization, MALDI, has been increasingly used in a variety of biomedical applications, including tissue imaging of clinical tissue samples, and in drug discovery and development. These studies strongly depend on the performance of the analytical instrumentation and would drastically benefit from improved sensitivity, reproducibility and mass / spatial resolution. In this work, we report on a novel combined MALDI/ESI interface, which was coupled to different Orbitrap mass spectrometers (Elite™ and Q Exactive™ Plus) and extensively characterized with peptide and protein standards, and in tissue imaging experiments...
June 14, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/28605699/intergroup-visual-perspective-taking-shared-group-membership-impairs-self-perspective-inhibition-but-may-facilitate-perspective-calculation
#9
Austin J Simpson, Andrew R Todd
Reasoning about what other people see, know, and want is essential for navigating social life. Yet, even neurodevelopmentally healthy adults make perspective-taking errors. Here, we examined how the group membership of perspective-taking targets (ingroup vs. outgroup) affects processes underlying visual perspective-taking. In three experiments using two bases of group identity (university affiliation and minimal groups), interference from one's own differing perspective (i.e., egocentric intrusion) was stronger when responding from an ingroup versus an outgroup member's perspective...
June 9, 2017: Cognition
https://www.readbyqxmd.com/read/28605681/a-vote-for-robustness-monitoring-serum-enzyme-activity-by-thin-layer-chromatography-of-dabsylated-bradykinin-products
#10
Malte Bayer, Simone König
High-end analytical methods provide excellent data but may lack the robustness required in large analytical studies. In particular complex chemical matrices may cause difficulties and increase the need for extensive sample preparation. For screening of patients we thus developed a low-tech assay to monitor bradykinin degradation by serum proteases. The bradykinin concentration mirrors the activity of angiotensin-converting enzyme (ACE). Dabsylated bradykinin (DBK) and its labeled fragments DBK1-8 and DBK1-5 were visualized by thin-layer chromatography using only 3μL of serum...
June 6, 2017: Journal of Pharmaceutical and Biomedical Analysis
https://www.readbyqxmd.com/read/28605629/analytic-information-processing-style-in-epilepsy-patients
#11
Marzia Buonfiglio, Francesco Di Sabato, Silvia Mandillo, Mariarita Albini, Carlo Di Bonaventura, Annateresa Giallonardo, Giuliano Avanzini
Relevant to the study of epileptogenesis is learning processing, given the pivotal role that neuroplasticity assumes in both mechanisms. Recently, evoked potential analyses showed a link between analytic cognitive style and altered neural excitability in both migraine and healthy subjects, regardless of cognitive impairment or psychological disorders. In this study we evaluated analytic/global and visual/auditory perceptual dimensions of cognitive style in patients with epilepsy. Twenty-five cryptogenic temporal lobe epilepsy (TLE) patients matched with 25 idiopathic generalized epilepsy (IGE) sufferers and 25 healthy volunteers were recruited and participated in three cognitive style tests: "Sternberg-Wagner Self-Assessment Inventory", the C...
June 9, 2017: Epilepsy & Behavior: E&B
https://www.readbyqxmd.com/read/28604065/using-radar-plots-to-demonstrate-the-accuracy-and-precision-of-6-blood-glucose-monitoring-systems
#12
Scott Pardo, Nancy Dunne, David A Simmons
BACKGROUND: Previously, fingertip capillary blood glucose measurements from the CONTOUR(®)NEXT (CN) blood glucose monitoring system (BGMS) and 5 other BGMSs were evaluated in comparison with measurements from a reference YSI glucose analyzer. Here, we use Radar Plots to graphically represent the accuracy and precision results from the previous study, including whether they met ISO 15197:2013 accuracy criteria. METHOD: A Radar Plot, a new method for capturing a distinct, single visualization of BGMS analytical performance, is a collection of concentric circles, each representing a particular magnitude of error...
June 1, 2017: Journal of Diabetes Science and Technology
https://www.readbyqxmd.com/read/28602298/some-practical-considerations-for-linearity-assessment-of-calibration-curves-as-function-of-concentration-levels-according-to-the-fitness-for-purpose-approach
#13
J M Jurado, A Alcázar, R Muñiz-Valencia, S G Ceballos-Magaña, F Raposo
Since linear calibration is mostly preferred for analytical determinations, linearity in the calibration range is an important performance characteristic of any instrumental analytical method. Linearity can be proved by applying several graphical and numerical approaches. The principal graphical criteria are visual inspection of the calibration plot, the residuals plot, and the response factors plot, also called sensitivity or linearity plot. All of them must include confidence limits in order to visualize linearity deviations...
September 1, 2017: Talanta
https://www.readbyqxmd.com/read/28600250/rclens-interactive-rare-category-exploration-and-identification
#14
Hanfei Lin, Siyuan Gao, David Gotz, Fan Du, Jingrui He, Nan Cao
Rare category identification is an important task in many application domains, ranging from network security, to financial fraud detection, to personalized medicine. These are all applications which require the discovery and characterization of sets of rare but structurally-similar data entities which are obscured within a larger but structurally different dataset. This paper introduces RCLens, a visual analytics system designed to support user-guided rare category exploration and identification. RCLens adopts a novel active learning-based algorithm to iteratively identify more accurate rare categories in response to user-provided feedback...
June 6, 2017: IEEE Transactions on Visualization and Computer Graphics
https://www.readbyqxmd.com/read/28600230/cytokine-and-chemokine-profile-changes-in-patients-with-lower-segment-lumbar-degenerative-spondylolisthesis
#15
Juraj Sutovsky, Martin Benco, Martina Sutovska, Michaela Kocmalova, Lenka Pappova, Juraj Miklusica, Andrej Frano, Egon Kurca
BACKGROUND: Lumbar degenerative spondylolisthesis (DS) develops as a result of inflammatory and remodeling processes in facet joints (FJs). Several inflammatory cytokines are involved in the osteoarthritic and remodeling changes that occur and in low-back and/or radicular pain, the most prevalent clinical symptom of disease. This study improves knowledge related to the roles that 27 cytokines, chemokines and growth factors play in the pathophysiology of lumbar DS. MATERIAL AND METHODS: Cytokine levels were examined using capture sandwich immunoassay using the Bio-Plex(®) 200 System and the Bio-PlexTM Human Cytokine Standard 27-Plex, Group I (Bio-Rad, Hercules, California, USA) separately in intervertebral discs (IVDs) and FJ bone tissue...
June 6, 2017: International Journal of Surgery
https://www.readbyqxmd.com/read/28600227/mirtarvis-web-based-interactive-visual-analytics-tool-for-microrna-target-predictions
#16
Sehi L'Yi, Daekyoung Jung, Minsik Oh, Bohyoung Kim, Robert J Freishtat, Mamta Giri, Eric Hoffman, Jinwook Seo
In this paper, we present miRTarVis+, a Web-based interactive visual analytics tool for miRNA target predictions and integrative analyses of multiple prediction results. Various microRNA (miRNA) target prediction algorithms have been developed to improve sequence-based miRNA target prediction by exploiting miRNA-mRNA expression profile data. There are also a few analytics tools to help researchers predict targets of miRNAs. However, there still is a need for improving the performance for miRNA prediction algorithms and more importantly for interactive visualization tools for an integrative analysis of multiple prediction results...
June 6, 2017: Methods: a Companion to Methods in Enzymology
https://www.readbyqxmd.com/read/28596917/assessment-of-vascular-change-using-swept-source-optical-coherence-tomography-angiography-a-new-theory-explains-central-visual-loss-in-behcet-s-disease
#17
Thanapong Somkijrungroj, Sritatath Vongkulsiri, Wijak Kongwattananon, Peranut Chotcomwongse, Sasivarin Luangpitakchumpol, Korrawan Jaisuekul
OBJECTIVE: To evaluate retinal vascular structural change in ocular Behcet's using optical coherence tomography angiography (OCTA) and fluorescein angiography (FA). METHODS: An analytic cross-sectional study of 37 eyes of 21 Behcet's uveitic patients was performed. Foveal retinal thickness (FRT), perifoveal hypoperfusion areas in superficial capillary plexus (SCP), and deep capillary plexus (DCP) were measured with swept-source optical coherence tomography and OCTA...
2017: Journal of Ophthalmology
https://www.readbyqxmd.com/read/28596010/silica-hydride-based-phases-for-small-molecule-separations-using-automated-liquid-chromatography-mass-spectrometry-method-development
#18
Dananjaya K Appulage, Kevin A Schug
Silica hydride, or Type C silica, has been developed as an alternative chromatographic support material for liquid chromatography. There are various bonded phases available with this new support. For four such phases (Cholesterol, Bidentate C18, Diamond Hydride, and Diol), retention and selectivity behavior were investigated using liquid chromatography coupled with triple quadrupole mass spectrometry. A set of small molecules from several chemical classes of interest, and varying in their physicochemical properties, were chromatographed under both reversed-phase and aqueous normal phase modes...
June 3, 2017: Journal of Chromatography. A
https://www.readbyqxmd.com/read/28594226/bayesian-analyses-of-cognitive-architecture
#19
Joseph W Houpt, Andrew Heathcote, Ami Eidels
The question of cognitive architecture-how cognitive processes are temporally organized-has arisen in many areas of psychology. This question has proved difficult to answer, with many proposed solutions turning out to be spurious. Systems factorial technology (Townsend & Nozawa, 1995) provided the first rigorous empirical and analytical method of identifying cognitive architecture, using the survivor interaction contrast (SIC) to determine when people are using multiple sources of information in parallel or in series...
June 2017: Psychological Methods
https://www.readbyqxmd.com/read/28594150/cortical-thickness-is-not-associated-with-current-depression-in-a-clinical-treatment-study
#20
Greg Perlman, Elizabeth Bartlett, Christine DeLorenzo, Myrna Weissman, Patrick McGrath, Todd Ogden, Tony Jin, Phillip Adams, Madhukar Trivedi, Benji Kurian, Maria Oquendo, Melvin McInnis, Sarah Weyandt, Maurizio Fava, Crystal Cooper, Ashley Malchow, Ramin Parsey
BACKGROUND: Reduced cortical thickness is a candidate biological marker of depression, although findings are inconsistent. This could reflect analytic heterogeneity, such as use of region-wise cortical thickness based on the Freesurfer Desikan-Killiany (DK) atlas or surface-based morphometry (SBM). The Freesurfer Destrieux (DS) atlas (more, smaller regions) has not been utilized in depression studies. This could also reflect differential gender and age effects. METHODS: Cortical thickness was collected from 170 currently depressed adults and 52 never-depressed adults...
June 8, 2017: Human Brain Mapping
keyword
keyword
111709
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"