keyword
https://read.qxmd.com/read/38612882/human-vault-rnas-exploring-their-potential-role-in-cellular-metabolism
#1
REVIEW
Magdalena Taube, Natalia Lisiak, Ewa Totoń, Błażej Rubiś
Non-coding RNAs have been described as crucial regulators of gene expression and guards of cellular homeostasis. Some recent papers focused on vault RNAs, one of the classes of non-coding RNA, and their role in cell proliferation, tumorigenesis, apoptosis, cancer response to therapy, and autophagy, which makes them potential therapy targets in oncology. In the human genome, four vault RNA paralogues can be distinguished. They are associated with vault complexes, considered the largest ribonucleoprotein complexes...
April 6, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38577970/chronically-activated-microglia-in-als-gradually-lose-their-immune-functions-and-develop-unconventional-proteome
#2
JOURNAL ARTICLE
Romina Barreto-Núñez, Louis-Charles Béland, Hejer Boutej, Vincent Picher-Martel, Nicolas Dupré, Luis Barbeito, Jasna Kriz
Neuroinflammation and chronic activation of microglial cells are the prominent features of amyotrophic lateral sclerosis (ALS) pathology. While alterations in the mRNA profile of diseased microglia have been well documented, the actual microglia proteome remains poorly characterized. Here we performed a functional characterization together with proteome analyses of microglial cells at different stages of disease in the SOD1-G93A model of ALS. Functional analyses of microglia derived from the lumbar spinal cord of symptomatic mice revealed: (i) remarkably high mitotic index (close to 100% cells are Ki67+) (ii) significant decrease in phagocytic capacity when compared to age-matched control microglia, and (iii) diminished response to innate immune challenges in vitro and in vivo...
April 5, 2024: Glia
https://read.qxmd.com/read/38278994/dissecting-16p11-2-hemi-deletion-to-study-sex-specific-striatal-phenotypes-of-neurodevelopmental-disorders
#3
JOURNAL ARTICLE
Jaekyoon Kim, Yann Vanrobaeys, Benjamin Kelvington, Zeru Peterson, Emily Baldwin, Marie E Gaine, Thomas Nickl-Jockschat, Ted Abel
Neurodevelopmental disorders (NDDs) are polygenic in nature and copy number variants (CNVs) are ideal candidates to study the nature of this polygenic risk. The disruption of striatal circuits is considered a central mechanism in NDDs. The 16p11.2 hemi-deletion (16p11.2 del/+) is one of the most common CNVs associated with NDD, and 16p11.2 del/+ mice show sex-specific striatum-related behavioral phenotypes. However, the critical genes among the 27 genes in the 16p11.2 region that underlie these phenotypes remain unknown...
January 26, 2024: Molecular Psychiatry
https://read.qxmd.com/read/37968726/dissecting-the-autism-associated-16p11-2-locus-identifies-multiple-drivers-in-neuroanatomical-phenotypes-and-unveils-a-male-specific-role-for-the-major-vault-protein
#4
JOURNAL ARTICLE
Perrine F Kretz, Christel Wagner, Anna Mikhaleva, Charlotte Montillot, Sylvain Hugel, Ilaria Morella, Meghna Kannan, Marie-Christine Fischer, Maxence Milhau, Ipek Yalcin, Riccardo Brambilla, Mohammed Selloum, Yann Herault, Alexandre Reymond, Stephan C Collins, Binnaz Yalcin
BACKGROUND: Using mouse genetic studies and systematic assessments of brain neuroanatomical phenotypes, we set out to identify which of the 30 genes causes brain defects at the autism-associated 16p11.2 locus. RESULTS: We show that multiple genes mapping to this region interact to regulate brain anatomy, with female mice exhibiting far fewer brain neuroanatomical phenotypes. In male mice, among the 13 genes associated with neuroanatomical defects (Mvp, Ppp4c, Zg16, Taok2, Slx1b, Maz, Fam57b, Bola2, Tbx6, Qprt, Spn, Hirip3, and Doc2a), Mvp is the top driver implicated in phenotypes pertaining to brain, cortex, hippocampus, ventricles, and corpus callosum sizes...
November 15, 2023: Genome Biology
https://read.qxmd.com/read/37873412/single-cell-signaling-analysis-reveals-that-major-vault-protein-facilitates-rasg12c-inhibitor-resistance
#5
Jason Z Zhang, Shao-En Ong, David Baker, Dustin J Maly
Recently developed covalent inhibitors for RasG12C provide the first pharmacological tools to target mutant Ras-driven cancers. However, the rapid development of resistance to current clinical Ras G12C inhibitors is common. Presumably, a subpopulation of RasG12C-expressing cells adapt their signaling to evade these inhibitors and the mechanisms for this phenomenon are unclear due to the lack of tools that can measure signaling with single-cell resolution. Here, we utilized recently developed Ras sensors to profile the environment of active Ras and to measure the activity of endogenous Ras in order to pair structure (Ras signalosome) to function (Ras activity), respectively, at a single-cell level...
October 4, 2023: bioRxiv
https://read.qxmd.com/read/37796003/-edwardsiella-ictaluri-t3ss-effector-esen-is-a-phosphothreonine-lyase-that-inactivates-erk1-2-p38-jnk-and-pdk1-and-modulates-cell-death-in-infected-macrophages
#6
JOURNAL ARTICLE
Ranjan Koirala, Chanida Fongsaran, Tanisha Poston, Matthew Rogge, Bryan Rogers, Ronald Thune, Lidiya Dubytska
EseN is an Edwardsiella ictaluri type III secretion system effector with phosphothreonine lyase activity. In this work, we demonstrate that EseN inactivates p38 and c-Jun-N-terminal kinase (JNK) in infected head-kidney-derived macrophages (HKDMs). We have previously reported inactivation of extracellular-regulated kinase 1/2 (ERK1/2). Also, for the first time, we demonstrated that EseN is involved in the inactivation of 3-phosphoinositide-dependent kinase 1 (PDK1), which has not been previously demonstrated for any of the EseN homologs in other species...
October 5, 2023: Microbiology Spectrum
https://read.qxmd.com/read/37704623/major-vault-protein-mvp-suppresses-aging-and-estrogen-deficiency-related-bone-loss-through-fas-mediated-apoptosis-in-osteoclasts
#7
JOURNAL ARTICLE
Ruobing Wang, Yan Yang, Zhongyin Zhang, Na Zhao, Erik A C Wiemer, Jingjing Ben, Junqing Ma, Lichan Yuan
Osteoclasts (OCs), derived from monocyte/macrophage lineage, are key orchestrators in bone remodeling. Targeting osteoclast apoptosis is a promising approach to cut down excessive osteoclast numbers, and thus slow down the rate of bone mass loss that inevitably occurs during aging. However, the therapeutic target of apoptosis in osteoclasts has not been fully studied. Our previous work generated Mvpf/f Lyz2-Cre mice, conditionally depleting major vault protein (MVP) in monocyte lineage, and identified MVP as a bone protector for its negative role in osteoclastogenesis in vivo and in vitro...
September 13, 2023: Cell Death & Disease
https://read.qxmd.com/read/37547216/the-interaction-between-the-major-vault-protein-rs4788186-polymorphism-alcohol-dependence-and-depression-among-male-chinese-problem-drinkers
#8
JOURNAL ARTICLE
Yuyu Wu, Ke Zhao, Yingjie Chen, Liujun Wu, Feng Qiu, Yuying Yuan, Guanghui Shen, Kexin Wang, Yimin Kang, Yongsheng Jiang, Wei Wang, Li Chen, Yanlong Liu, Xuebo Pan, Fan Wang, Longteng Xie
OBJECTIVE: Alcohol use disorder (AUD) is the second most prevalent mental disorder and might be related to depression. Major vault protein (MVP) is a cytoplasmic protein related to vesicle transport. The present study aimed to investigate the interaction between a genetic variant (MVP rs4788186) and depression in adult male Han Chinese with AUD during withdrawal. METHODS: All participants ( N  = 435) were diagnosed with AUD. Alcohol dependence level was measured using the Michigan Alcoholism Screening Test, and depression was measured using the self-rating depression scale...
2023: Frontiers in Psychiatry
https://read.qxmd.com/read/37301807/oxytetracycline-induced-inflammatory-process-without-oxidative-stress-in-blue-mussels-mytilus-trossulus
#9
JOURNAL ARTICLE
Anna Hallmann, Dagmara Leszczyńska, Aleksandra Czumaj, Justyna Świeżak, Magda Caban, Alicja Michnowska, Katarzyna Smolarz
Potentially harmful compounds including pharmaceuticals are commonly found in marine waters and sediments. Amongst those, antibiotics and their metabolites are detected worldwide in various abiotic (at concentrations as high as µg/L) and biotic matrices at ng/gram of tissue, posing a risk to non-target species exposed to them such as blue mussels. Amongst those, oxytetracycline (OTC) belongs to the most detected antibiotics in the marine environment. In this work, we concentrated on studying the potential induction of oxidative stress, activation of cellular detoxification processes (including Phase I and Phase II xenobiotic biotransformation enzymes) and multixenobiotic resistance pumps (Phase III) as well as changes in the aromatisation efficiency in Mytilus trossulus exposed to 100 μg/L OTC...
June 10, 2023: Environmental Science and Pollution Research International
https://read.qxmd.com/read/37267856/macrophage-mvp-regulates-fracture-repair-by-promoting-m2-polarization-via-jak2-stat6-pathway
#10
JOURNAL ARTICLE
Yan Yang, Na Zhao, Ruobing Wang, Zhuorong Zhan, Shuyu Guo, Haiyang Song, Erik A C Wiemer, Jingjing Ben, Junqing Ma
OBJECTIVE: Major vault protein (MVP) is vital in various macrophage-related inflammatory diseases. However, the effects of MVP on macrophage polarization during fracture repair are still unknown. METHODS: We used Mvpflox/flox Lyz2-Cre mice (myeloid-specific MVP gene knockout, abbreviated as MacKO) and Mvpflox/flox (abbreviated as MacWT) mice to compare their fracture healing phenotype. Next, we traced the changes in macrophage immune status in vivo and in vitro...
May 31, 2023: International Immunopharmacology
https://read.qxmd.com/read/37192622/integrated-proteomics-identifies-p62-dependent-selective-autophagy-of-the-supramolecular-vault-complex
#11
JOURNAL ARTICLE
Reo Kurusu, Yuki Fujimoto, Hideaki Morishita, Daisuke Noshiro, Shuhei Takada, Koji Yamano, Hideaki Tanaka, Ritsuko Arai, Shun Kageyama, Tomoko Funakoshi, Satoko Komatsu-Hirota, Hikari Taka, Saiko Kazuno, Yoshiki Miura, Masato Koike, Toshifumi Wakai, Satoshi Waguri, Nobuo N Noda, Masaaki Komatsu
In addition to membranous organelles, autophagy selectively degrades biomolecular condensates, in particular p62/SQSTM1 bodies, to prevent diseases including cancer. Evidence is growing regarding the mechanisms by which autophagy degrades p62 bodies, but little is known about their constituents. Here, we established a fluorescence-activated-particle-sorting-based purification method for p62 bodies using human cell lines and determined their constituents by mass spectrometry. Combined with mass spectrometry of selective-autophagy-defective mouse tissues, we identified vault, a large supramolecular complex, as a cargo within p62 bodies...
May 9, 2023: Developmental Cell
https://read.qxmd.com/read/37036999/a-genetically-encoded-photoproximity-labeling-approach-for-mapping-protein-territories
#12
JOURNAL ARTICLE
Nir Hananya, Xuanjia Ye, Shany Koren, Tom W Muir
Studying dynamic biological processes requires approaches compatible with the lifetimes of the biochemical transactions under investigation, which can be very short. We describe a genetically encoded system that allows protein neighborhoods to be mapped using visible light. Our approach involves fusing an engineered flavoprotein to a protein of interest. Brief excitation of the fusion protein leads to the labeling of nearby proteins with cell-permeable probes. Mechanistic studies reveal different labeling pathways are operational depending on the nature of the exogenous probe that is employed...
April 18, 2023: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/36835627/addressing-critical-issues-related-to-storage-and-stability-of-the-vault-nanoparticle-expressed-and-purified-from-komagataella-phaffi
#13
JOURNAL ARTICLE
Giulia Tomaino, Camilla Pantaleoni, Diletta Ami, Filomena Pellecchia, Annie Dutriaux, Linda Barbieri, Stefania Garbujo, Antonino Natalello, Paolo Tortora, Gianni Frascotti
The vault nanoparticle is a eukaryotic assembly consisting of 78 copies of the 99-kDa major vault protein. They generate two cup-shaped symmetrical halves, which in vivo enclose protein and RNA molecules. Overall, this assembly is mainly involved in pro-survival and cytoprotective functions. It also holds a remarkable biotechnological potential for drug/gene delivery, thanks to its huge internal cavity and the absence of toxicity/immunogenicity. The available purification protocols are complex, partly because they use higher eukaryotes as expression systems...
February 20, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36824977/dissecting-16p11-2-hemi-deletion-to-study-sex-specific-striatal-phenotypes-of-neurodevelopmental-disorders
#14
Ted Abel, Jaekyoon Kim, Yann Vanrobaeys, Zeru Peterson, Benjamin Kelvington, Marie Gaine, Thomas Nickl-Jockschat
Neurodevelopmental disorders (NDDs) are polygenic in nature and copy number variants (CNVs) are ideal candidates to study the nature of this polygenic risk. The disruption of striatal circuits is considered a central mechanism in NDDs. The 16p11.2 hemi-deletion (16p11.2 del) is one of the most common CNVs associated with NDD, and 16p11.2 del/+ mice show sex-specific striatum-related behavioral phenotypes. However, the critical genes among the 27 genes in the 16p11.2 region that underlie these phenotypes remain unknown...
February 17, 2023: Research Square
https://read.qxmd.com/read/36822455/the-molecular-mechanisms-of-apoptosis-accompanied-with-the-epigenetic-regulation-of-the-ny-eso-1-antigen-in-non-small-lung-cancer-cells-treated-with-decitabine-5-aza-cdr
#15
JOURNAL ARTICLE
Varghese P Inchakalody, Shereena P Hydrose, Roopesh Krishnankutty, Maysaloun Merhi, Lubna Therachiyil, Varun Sasidharan Nair, Asma A Elashi, Abdul Q Khan, Sara Taleb, Afsheen Raza, Zeenath Safira, Queenie Fernandes, Lobna Al-Zaidan, Sarra Mestiri, Nassiba Taib, Takwa Bedhiafi, Dina Moustafa, Laila Assami, Karama Makni Maalej, Eyad Elkord, Shahab Uddin, Ussama Al Homsi, Said Dermime
Dysregulated epigenetic modifications are common in lung cancer but have been reversed using demethylating agent like 5-Aza-CdR. 5-Aza-CdR induces/upregulates the NY-ESO-1 antigen in lung cancer. Therefore, we investigated the molecular mechanisms accompanied with the epigenetic regulation of NY-ESO-1 in 5-Aza-CdR-treated NCI-H1975 cell line. We showed significant induction of the NY-ESO-1 protein (**p < 0.0097) using Cellular ELISA. Bisulfite-sequencing demonstrated 45.6% demethylation efficiency at the NY-ESO-1 gene promoter region and RT-qPCR analysis confirmed the significant induction of NY-ESO-1 at mRNA level (128-fold increase, *p < 0...
February 21, 2023: European Journal of Pharmacology
https://read.qxmd.com/read/36798381/dissecting-16p11-2-hemi-deletion-to-study-sex-specific-striatal-phenotypes-of-neurodevelopmental-disorders
#16
Jaekyoon Kim, Yann Vanrobaeys, Zeru Peterson, Benjamin Kelvington, Marie E Gaine, Thomas Nickl-Jockschat, Ted Abel
Neurodevelopmental disorders (NDDs) are polygenic in nature and copy number variants (CNVs) are ideal candidates to study the nature of this polygenic risk. The disruption of striatal circuits is considered a central mechanism in NDDs. The 16p11.2 hemi-deletion (16p11.2 del) is one of the most common CNVs associated with NDD, and 16p11.2 del/+ mice show sex-specific striatum-related behavioral phenotypes. However, the critical genes among the 27 genes in the 16p11.2 region that underlie these phenotypes remain unknown...
February 9, 2023: bioRxiv
https://read.qxmd.com/read/36555185/-escherichia-coli-as-a-new-platform-for-the-fast-production-of-vault-like-nanoparticles-an-optimized-protocol
#17
JOURNAL ARTICLE
Roger Fernández, Aida Carreño, Rosa Mendoza, Antoni Benito, Neus Ferrer-Miralles, María Virtudes Céspedes, José Luis Corchero
Vaults are protein nanoparticles that are found in almost all eukaryotic cells but are absent in prokaryotic ones. Due to their properties (nanometric size, biodegradability, biocompatibility, and lack of immunogenicity), vaults show enormous potential as a bio-inspired, self-assembled drug-delivery system (DDS). Vault architecture is directed by self-assembly of the "major vault protein" (MVP), the main component of this nanoparticle. Recombinant expression (in different eukaryotic systems) of the MVP resulted in the formation of nanoparticles that were indistinguishable from native vaults...
December 8, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/36481650/correlation-of-expression-of-major-vault-protein-with-androgen-receptor-and-immune-checkpoint-protein-b7-h3-and-with-poor-prognosis-in-prostate-cancer
#18
JOURNAL ARTICLE
Caroline E Nunes-Xavier, Maite Emaldi, Ingrid J Guldvik, Håkon Ramberg, Kristin A Taskén, Gunhild M Mælandsmo, Øystein Fodstad, Roberto Llarena, Rafael Pulido, José I López
Prostate cancer diagnosis and early stratification is an important aspect to avoid undertreatment of high-risk prostate cancer patients. Major Vault Protein (MVP) has been proposed as a prognostic biomarker in prostate cancer. PTEN and the immune checkpoint protein B7-H3 interact with MVP and are important in prostate cancer progression and therapy response. We evaluated the expression of MVP by immunohistochemistry of tissue microarray samples from a retrospective cohort consisting of 119 prostate cancer patients...
November 24, 2022: Pathology, Research and Practice
https://read.qxmd.com/read/36286037/cellular-molecular-and-proteomic-characteristics-of-early-hepatocellular-carcinoma
#19
JOURNAL ARTICLE
Athanasios Armakolas, Vasiliki Dimopoulou, Adrianos Nezos, George Stamatakis, Martina Samiotaki, George Panayotou, Maria Tampaki, Martha Stathaki, Spyridon Dourakis, John Koskinas
Hepatocellular carcinoma (HCC) accounts for the majority of primary liver cancers. Early detection/diagnosis is vital for the prognosis of HCC, whereas diagnosis at late stages is associated with very low survival rate. Early diagnosis is based on 6-month surveillance of the patient and the use of at least two imaging modalities. The aim of this study was to investigate diagnostic markers for the detection of early HCC based on proteome analysis, microRNAs (miRNAs) and circulating tumor cells (CTCs) in the blood of patients with cirrhosis or early or advanced HCC...
October 10, 2022: Current Issues in Molecular Biology
https://read.qxmd.com/read/36147518/nanoparticles-design-considerations-to-co-deliver-nucleic-acids-and-anti-cancer-drugs-for-chemoresistance-reversal
#20
JOURNAL ARTICLE
Sahar Eljack, Stephanie David, Areeg Faggad, Igor Chourpa, Emilie Allard-Vannier
Chemoresistance and hence the consequent treatment failure is considerably challenging in clinical cancer therapeutics. The understanding of the genetic variations in chemoresistance acquisition encouraged the use of gene modulatory approaches to restore anti-cancer drug efficacy. Many smart nanoparticles are designed and optimized to mediate combinational therapy between nucleic acid and anti-cancer drugs. This review aims to define a rational design of such co-loaded nanocarriers with the aim of chemoresistance reversal at various cellular levels to improve the therapeutic outcome of anticancer treatment...
December 2022: International journal of pharmaceutics: X
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