keyword
Keywords Machine learning in physical a...

Machine learning in physical activity

https://read.qxmd.com/read/38651738/fep-augmentation-as-a-means-to-solve-data-paucity-problems-for-machine-learning-in-chemical-biology
#1
JOURNAL ARTICLE
Pieter B Burger, Xiaohu Hu, Ilya Balabin, Morné Muller, Megan Stanley, Fourie Joubert, Thomas M Kaiser
In the realm of medicinal chemistry, the primary objective is to swiftly optimize a multitude of chemical properties of a set of compounds to yield a clinical candidate poised for clinical trials. In recent years, two computational techniques, machine learning (ML) and physics-based methods, have evolved substantially and are now frequently incorporated into the medicinal chemist's toolbox to enhance the efficiency of both hit optimization and candidate design. Both computational methods come with their own set of limitations, and they are often used independently of each other...
April 23, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38648367/accelerated-sequence-design-of-star-block-copolymers-an-unbiased-exploration-strategy-via-fusion-of-molecular-dynamics-simulations-and-machine-learning
#2
JOURNAL ARTICLE
Jan-Michael Y Carrillo, Vijith Parambil, Tarak K Patra, Zhan Chen, Thomas P Russell, Subramanian K R S Sankaranarayanan, Bobby G Sumpter, Rohit Batra
Star block copolymers (s-BCPs) have potential applications as novel surfactants or amphiphiles for emulsification, compatibilization, chemical transformations, and separations. s-BCPs have chain architectures where three or more linear diblock copolymer arms comprised of two chemically distinct linear polymers, e.g., solvophobic and solvophilic chains, are covalently joined at one point. The chemical composition of each of the subunit polymer chains comprising the arms, their molecular weights, and the number of arms can be varied to tailor the surface and interfacial activity of these architecturally unique molecules...
April 22, 2024: Journal of Physical Chemistry. B
https://read.qxmd.com/read/38645167/risk-factors-affecting-polygenic-score-performance-across-diverse-cohorts
#3
Daniel Hui, Scott Dudek, Krzysztof Kiryluk, Theresa L Walunas, Iftikhar J Kullo, Wei-Qi Wei, Hemant K Tiwari, Josh F Peterson, Wendy K Chung, Brittney Davis, Atlas Khan, Leah Kottyan, Nita A Limdi, Qiping Feng, Megan J Puckelwartz, Chunhua Weng, Johanna L Smith, Elizabeth W Karlson, Regeneron Genetics Center, Gail P Jarvik, Marylyn D Ritchie
Apart from ancestry, personal or environmental covariates may contribute to differences in polygenic score (PGS) performance. We analyzed effects of covariate stratification and interaction on body mass index (BMI) PGS (PGS BMI ) across four cohorts of European (N=491,111) and African (N=21,612) ancestry. Stratifying on binary covariates and quintiles for continuous covariates, 18/62 covariates had significant and replicable R 2 differences among strata. Covariates with the largest differences included age, sex, blood lipids, physical activity, and alcohol consumption, with R 2 being nearly double between best and worst performing quintiles for certain covariates...
April 10, 2024: medRxiv
https://read.qxmd.com/read/38644067/rationale-and-design-of-the-pacific-preserved-phenomapping-classification-and-innovation-for-cardiac-dysfunction-in-patients-with-heart-failure-and-preserved-left-ventricular-ejection-fraction-study
#4
JOURNAL ARTICLE
Jean-Sébastien Hulot, Philip Janiak, Philippe Boutinaud, Pierre Boutouyrie, Frédérique Chézalviel-Guilbert, Jean-Joseph Christophe, Ariel Cohen, Thibaud Damy, Juliette Djadi-Prat, Hüseyin Firat, Pierre-Yves Hervé, Richard Isnard, Guillaume Jondeau, Elie Mousseaux, Mathieu Pernot, Pierre Prot, Benoit Tyl, Gilles Soulat, Damien Logeart
BACKGROUND: Heart failure with preserved ejection fraction (HFpEF) is a heterogeneous syndrome that is poorly defined, reflecting an incomplete understanding of its pathophysiology. AIM: To redefine the phenotypic spectrum of HFpEF. METHODS: The PACIFIC-PRESERVED study is a prospective multicentre cohort study designed to perform multidimensional deep phenotyping of patients diagnosed with HFpEF (left ventricular ejection fraction≥50%), patients with heart failure with reduced ejection fraction (left ventricular ejection fraction≤40%) and subjects without overt heart failure (3:2:1 ratio)...
April 12, 2024: Archives of Cardiovascular Diseases
https://read.qxmd.com/read/38642322/establishment-of-a-mild-cognitive-impairment-risk-model-in-middle-aged-and-older-adults-a-longitudinal-study
#5
JOURNAL ARTICLE
Xin Zhang, Hong Fan, Chengnan Guo, Yi Li, Xinyu Han, Yiyun Xu, Haili Wang, Tiejun Zhang
BACKGROUND: Early identification individuals at high risk of mild cognitive impairment (MCI) is essential for prevention and intervention strategies of dementia, such as Alzheimer's disease. MCI prediction considering the interdependence of predictors in longitudinal data needs to be further explored. We aimed to employ machine learning (ML) to develop and verify a prediction model of MCI. METHODS: In a longitudinal population-based cohort of China Health and Retirement Longitudinal Study (CHARLS), 8390 non-MCI participants were enrolled...
April 20, 2024: Neurological Sciences
https://read.qxmd.com/read/38640473/machine-learning-based-prediction-of-changes-in-the-clinical-condition-of-patients-with-complex-chronic-diseases-2-phase-pilot-prospective-single-center-observational-study
#6
JOURNAL ARTICLE
Celia Alvarez-Romero, Alejandro Polo-Molina, Eugenio Francisco Sánchez-Úbeda, Carlos Jimenez-De-Juan, Maria Pastora Cuadri-Benitez, Jose Antonio Rivas-Gonzalez, Jose Portela, Rafael Palacios, Carlos Rodriguez-Morcillo, Antonio Muñoz, Carlos Luis Parra-Calderon, Maria Dolores Nieto-Martin, Manuel Ollero-Baturone, Carlos Hernández-Quiles
BACKGROUND: Functional impairment is one of the most decisive prognostic factors in patients with complex chronic diseases. A more significant functional impairment indicates that the disease is progressing, which requires implementing diagnostic and therapeutic actions that stop the exacerbation of the disease. OBJECTIVE: This study aimed to predict alterations in the clinical condition of patients with complex chronic diseases by predicting the Barthel Index (BI), to assess their clinical and functional status using an artificial intelligence model and data collected through an internet of things mobility device...
April 19, 2024: JMIR Formative Research
https://read.qxmd.com/read/38639016/aecroscopy-a-software-hardware-framework-empowering-microscopy-toward-automated-and-autonomous-experimentation
#7
JOURNAL ARTICLE
Yongtao Liu, Kevin Roccapriore, Marti Checa, Sai Mani Valleti, Jan-Chi Yang, Stephen Jesse, Rama K Vasudevan
Microscopy has been pivotal in improving the understanding of structure-function relationships at the nanoscale and is by now ubiquitous in most characterization labs. However, traditional microscopy operations are still limited largely by a human-centric click-and-go paradigm utilizing vendor-provided software, which limits the scope, utility, efficiency, effectiveness, and at times reproducibility of microscopy experiments. Here, a coupled software-hardware platform is developed that consists of a software package termed AEcroscopy (short for Automated Experiments in Microscopy), along with a field-programmable-gate-array device with LabView-built customized acquisition scripts, which overcome these limitations and provide the necessary abstractions toward full automation of microscopy platforms...
April 19, 2024: Small Methods
https://read.qxmd.com/read/38637465/a-machine-learning-approach-for-prediction-of-cdai-remission-with-tnf-inhibitors-a-concept-of-precision-medicine-from-the-first-registry
#8
JOURNAL ARTICLE
Koshiro Sonomoto, Yoshihisa Fujino, Hiroaki Tanaka, Atsushi Nagayasu, Shingo Nakayamada, Yoshiya Tanaka
INTRODUCTION: This study aimed to develop low-cost models using machine learning approaches predicting the achievement of Clinical Disease Activity Index (CDAI) remission 6 months after initiation of tumor necrosis factor inhibitors (TNFi) as primary biologic/targeted synthetic disease-modifying antirheumatic drugs (b/tsDMARDs) for rheumatoid arthritis (RA). METHODS: Data of patients with RA initiating TNFi as first b/tsDMARD after unsuccessful methotrexate treatment were collected from the FIRST registry (August 2003 to October 2022)...
April 18, 2024: Rheumatology and Therapy
https://read.qxmd.com/read/38632396/machine-learning-reveals-the-control-mechanics-of-an-insect-wing-hinge
#9
JOURNAL ARTICLE
Johan M Melis, Igor Siwanowicz, Michael H Dickinson
Insects constitute the most species-rich radiation of metazoa, a success that is due to the evolution of active flight. Unlike pterosaurs, birds and bats, the wings of insects did not evolve from legs1 , but are novel structures that are attached to the body via a biomechanically complex hinge that transforms tiny, high-frequency oscillations of specialized power muscles into the sweeping back-and-forth motion of the wings2 . The hinge consists of a system of tiny, hardened structures called sclerites that are interconnected to one another via flexible joints and regulated by the activity of specialized control muscles...
April 17, 2024: Nature
https://read.qxmd.com/read/38623305/enhancing-fraud-detection-in-banking-by-integration-of-graph-databases-with-machine-learning
#10
JOURNAL ARTICLE
Ayushi Patil, Shreya Mahajan, Jinal Menpara, Shivali Wagle, Preksha Pareek, Ketan Kotecha
The banking sector's shift from traditional physical locations to digital channels has offered customers unprecedented convenience and increased the risk of fraud for customers and institutions alike. In this study, we discuss the pressing need for robust fraud detection & prevention systems in the context of evolving technological environments. We introduce a graph-based machine learning model that is specifically designed to detect fraudulent activity in various types of banking operations, such as credit card transactions, debit card transactions, and online banking transactions...
June 2024: MethodsX
https://read.qxmd.com/read/38614401/machine-learning-assisted-chromium-speciation-using-a-single-well-ratiometric-fluorescent-nanoprobe
#11
JOURNAL ARTICLE
Razieh Motamedi Khozani, Samira Abbasi-Moayed, Mohammad Reza Hormozi-Nezhad
Chromium is widely recognized as a significant pollutant discharged into the environment by various industrial activities. The toxicity of this element is dependent on its oxidation state, making speciation analysis crucial for monitoring the quality of environmental water and assessing the potential risks associated with industrial waste. This study introduces a single-well fluorometric sensor that utilizes orange emissive thioglycolic acid stabilized CdTe quantum dots (TGA-QDs) and blue emissive carbon dots (CDs) to detect and differentiate between various chromium species, such as Cr (III) and Cr (VI) (i...
April 11, 2024: Chemosphere
https://read.qxmd.com/read/38612671/optimizing-neural-networks-for-chemical-reaction-prediction-insights-from-methylene-blue-reduction-reactions
#12
JOURNAL ARTICLE
Ivan Malashin, Vadim Tynchenko, Andrei Gantimurov, Vladimir Nelyub, Aleksei Borodulin
This paper offers a thorough investigation of hyperparameter tuning for neural network architectures using datasets encompassing various combinations of Methylene Blue (MB) Reduction by Ascorbic Acid (AA) reactions with different solvents and concentrations. The aim is to predict coefficients of decay plots for MB absorbance, shedding light on the complex dynamics of chemical reactions. Our findings reveal that the optimal model, determined through our investigation, consists of five hidden layers, each with sixteen neurons and employing the Swish activation function...
March 29, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38612432/aflibercept-off-target-effects-in-diabetic-macular-edema-an-in-silico-modeling-approach
#13
JOURNAL ARTICLE
Morgane Blanot, Ricardo Pedro Casaroli-Marano, Jordi Mondéjar-Medrano, Thaïs Sallén, Esther Ramírez, Cristina Segú-Vergés, Laura Artigas
Intravitreal aflibercept injection (IAI) is a treatment for diabetic macular edema (DME), but its mechanism of action (MoA) has not been completely elucidated. Here, we aimed to explore IAI's MoA and its multi-target nature in DME pathophysiology with an in silico (computer simulation) disease model. We used the Therapeutic Performance Mapping System (Anaxomics Biotech property) to generate mathematical models based on the available scientific knowledge at the time of the study, describing the relationship between the modulation of vascular endothelial growth factor receptors (VEGFRs) by IAI and DME pathophysiological processes...
March 23, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38612060/atomic-diffusivities-of-yttrium-titanium-and-oxygen-calculated-by-ab-initio-molecular-dynamics-in-molten-316l-oxide-dispersion-strengthened-steel-fabricated-via-additive-manufacturing
#14
JOURNAL ARTICLE
Zhengming Wang, Seongun Yang, Stephanie B Lawson, V Vinay K Doddapaneni, Marc Albert, Benjamin Sutton, Chih-Hung Chang, Somayeh Pasebani, Donghua Xu
Oxide-dispersion-strengthened (ODS) steels have long been viewed as a prime solution for harsh environments. However, conventional manufacturing of ODS steels limits the final product geometry, is difficult to scale up to large components, and is expensive due to multiple highly involved, solid-state processing steps required. Additive manufacturing (AM) can directly incorporate dispersion elements (e.g., Y, Ti and O) during component fabrication, thus bypassing the need for an ODS steel supply chain, the scale-up challenges of powder processing routes, the buoyancy challenges associated with casting ODS steels, and the joining issues for net-shape component fabrication...
March 28, 2024: Materials
https://read.qxmd.com/read/38610576/using-computer-vision-to-annotate-video-recoded-direct-observation-of-physical-behavior
#15
JOURNAL ARTICLE
Sarah K Keadle, Skylar Eglowski, Katie Ylarregui, Scott J Strath, Julian Martinez, Alex Dekhtyar, Vadim Kagan
Direct observation is a ground-truth measure for physical behavior, but the high cost limits widespread use. The purpose of this study was to develop and test machine learning methods to recognize aspects of physical behavior and location from videos of human movement: Adults (N = 26, aged 18-59 y) were recorded in their natural environment for two, 2- to 3-h sessions. Trained research assistants annotated videos using commercially available software including the following taxonomies: (1) sedentary versus non-sedentary (two classes); (2) activity type (four classes: sedentary, walking, running, and mixed movement); and (3) activity intensity (four classes: sedentary, light, moderate, and vigorous)...
April 8, 2024: Sensors
https://read.qxmd.com/read/38610249/towards-automating-personal-exercise-assessment-and-guidance-with-affordable-mobile-technology
#16
JOURNAL ARTICLE
Maria Sideridou, Evangelia Kouidi, Vassilia Hatzitaki, Ioanna Chouvarda
Physical activity (PA) offers many benefits for human health. However, beginners often feel discouraged when introduced to basic exercise routines. Due to lack of experience and personal guidance, they might abandon efforts or experience musculoskeletal injuries. Additionally, due to phenomena such as pandemics and limited access to supervised exercise spaces, especially for the elderly, the need to develop personalized systems has become apparent. In this work, we develop a monitored physical exercise system that offers real-time guidance and recommendations during exercise, designed to assist users in their home environment...
March 22, 2024: Sensors
https://read.qxmd.com/read/38608775/applications-of-artificial-intelligence-ai-in-drinking-water-treatment-processes-possibilities
#17
REVIEW
Shakhawat Chowdhury, Tanju Karanfil
In water treatment processes (WTPs), artificial intelligence (AI) based techniques, particularly machine learning (ML) models have been increasingly applied in decision-making activities, process control and optimization, and cost management. At least 91 peer-reviewed articles published since 1997 reported the application of AI techniques to coagulation/flocculation (41), membrane filtration (21), disinfection byproducts (DBPs) formation (13), adsorption (16) and other operational management in WTPs. In this paper, these publications were reviewed with the goal of assessing the development and applications of AI techniques in WTPs and determining their limitations and areas for improvement...
April 10, 2024: Chemosphere
https://read.qxmd.com/read/38606800/machine-learning-to-promote-efficient-screening-of-low-contact-electrode-for-two-dimensional-semiconductor-transistor-under-limited-data
#18
JOURNAL ARTICLE
Penghui Li, Linpeng Dong, Chong Li, Yan Li, Jie Zhao, Bo Peng, Wei Wang, Shun Zhou, Weiguo Liu
Low-barrier and high-injection electrodes are crucial for high-performance two-dimensional semiconductor devices. Conventional trial-and-error methodologies for electrode material screening are impractical because of their low efficiency and arbitrary specificity. Although machine learning has emerged as a promising alternative to tackle this problem, its practical application in semiconductor devices has been hindered by its substantial data requirements. In this paper, we propose a comprehensive scheme combining an autoencoding regularized adversarial neural network and a feature-adaptive variational active learning algorithm for screening low-contact electrode materials for two-dimensional semiconductor transistors with limited data...
April 12, 2024: Advanced Materials
https://read.qxmd.com/read/38593033/active-and-transfer-learning-of-high-dimensional-neural-network-potentials-for-transition-metals
#19
JOURNAL ARTICLE
Bilvin Varughese, Sukriti Manna, Troy D Loeffler, Rohit Batra, Mathew J Cherukara, Subramanian K R S Sankaranarayanan
Classical molecular dynamics (MD) simulations represent a very popular and powerful tool for materials modeling and design. The predictive power of MD hinges on the ability of the interatomic potential to capture the underlying physics and chemistry. There have been decades of seminal work on developing interatomic potentials, albeit with a focus predominantly on capturing the properties of bulk materials. Such physics-based models, while extensively deployed for predicting the dynamics and properties of nanoscale systems over the past two decades, tend to perform poorly in predicting nanoscale potential energy surfaces (PESs) when compared to high-fidelity first-principles calculations...
April 9, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38587451/a-scanning-tunneling-microscopy-study-of-the-photoisomerization-of-diazocine
#20
JOURNAL ARTICLE
Chamathka Dehiwala Liyanage, José J Ortiz-Garcia, Annalena Struckmeier, Christian L McCoy, Michael A Kienzler, Rebecca C Quardokus
Azobenzenes are fascinating molecular machines that can reversibly transform between two isomeric forms by an external stimulus. Diazocine, a type of bridged azobenzene, has been shown to possess enhanced photoexcitation properties. Due to the distortion caused by the ethyl bridge in the E-isomer, the Z-form becomes the thermodynamically stable configuration. Despite a comprehensive understanding of its photophysical properties, there is still much to learn about the behavior of diazocine on a metal surface...
April 8, 2024: Journal of Physical Chemistry Letters
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