keyword
https://read.qxmd.com/read/38630680/a-simulation-based-comparison-of-drug-drug-interaction-signal-detection-methods
#1
JOURNAL ARTICLE
Dagyeom Jung, Inkyung Jung
Several statistical methods have been proposed to detect adverse drug reactions induced by taking two drugs together. These suspected adverse drug reactions can be discovered through post-market drug safety surveillance, which mainly relies on spontaneous reporting system database. Most previous studies have applied statistical models to real world data, but it is not clear which method outperforms the others. We aimed to assess the performance of various detection methods by implementing simulations under various conditions...
2024: PloS One
https://read.qxmd.com/read/38630445/cohort-effects-on-tobacco-consumption-and-its-genetic-and-environmental-variance-among-finnish-adults-born-between-1880-1957
#2
JOURNAL ARTICLE
Stephanie Zellers, Hermine H M Maes, Antti Latvala, Jaakko Kaprio
INTRODUCTION: Population research indicates that smoking behaviors in Finland have varied over time by sex and birth cohort. Smoking behaviors are influenced by genes and the environment; like the behaviors themselves, these underlying influences are not necessarily stable over time and may be modifiable by national drug policy. METHODS: We utilized longitudinal mixed effects models and causal-common-contingent twin models to evaluate sex and cohort effects on tobacco consumption and the underlying genetic and environmental variance components in a birth cohort sample of same-sex twins born in Finland between 1880-1957, assessed in 1975, 1981, 1990, and 2011...
April 17, 2024: Nicotine & Tobacco Research
https://read.qxmd.com/read/38630426/the-vehicle-of-administration-feed-or-water-and-prandial-state-influence-the-oral-bioavailability-of-amoxicillin-in-piglets
#3
JOURNAL ARTICLE
Julieta M Decundo, Susana N Dieguez, Guadalupe Martínez, Fabián A Amanto, Denisa S Pérez Gaudio, Alejandro L Soraci
Feed and water components may interact with drugs and affect their dissolution and bioavailability. The impact of the vehicle of administration (feed and water) and the prandial condition of weaner piglets on amoxicillin´s oral bioavailability was evaluated. First, amoxicillin's in vitro dissolution and stability in purified, soft, and hard water, as well as release kinetics from feed in simulated gastric and intestinal media were assessed. Then, pharmacokinetic parameters and bioavailability were determined in fasted and fed pigs using soft water, hard water, or feed as vehicles of administration following a balanced incomplete block design...
April 17, 2024: Veterinary Research Communications
https://read.qxmd.com/read/38630367/targeting-inflammation-in-perivascular-cells-and-neuroimmune-interactions-for-treating-kidney-disease
#4
REVIEW
Shinji Tanaka
Inflammation plays a crucial role in the pathophysiology of various kidney diseases. Kidney perivascular cells (pericytes/fibroblasts) are responsible for producing proinflammatory molecules, promoting immune cell infiltration, and enhancing inflammation. Vascular adhesion protein-1, expressed in kidney perivascular cells, is an ectoenzyme that catalyzes the oxidative deamination of primary amines with the production of hydrogen peroxide in the extracellular space. Our study demonstrated that blocking this enzyme suppressed hydrogen peroxide production and neutrophil infiltration, thereby reducing renal ischemia-reperfusion injury...
April 17, 2024: Clinical and Experimental Nephrology
https://read.qxmd.com/read/38630357/exploring-ribosomal-genes-as-potential-biomarkers-of-the-immune-microenvironment-in-respiratory-syncytial-virus-infection
#5
JOURNAL ARTICLE
Lu Lin, Zenghua Liao, Chaoqian Li
Respiratory syncytial virus (RSV) is the most common pathogen causing acute lower respiratory tract infection in infants and children. Due to limited knowledge of the pathological and molecular mechanisms of immunodeficiency underlying RSV disease, there is currently a lack of an approved and effective RSV vaccine to combat RSV infections. This study aimed to identify genes associated with immune dysfunction using bioinformatics methods to gain insights into the role of dysregulated immune genes in RSV disease progression, and to predict potential therapeutic drugs by targeting dysregulated immune-related genes...
April 17, 2024: Biochemical Genetics
https://read.qxmd.com/read/38630336/opioids-induced-long-qt-syndrome-a-challenge-to-cardiac-health
#6
REVIEW
Jiale Hu, Yongfei Song, Xiaoyan Huang, Chongrong Li, Xiaojun Jin, Lichao Cen, Chuanjin Zhang, Beilei Ding, Jiangfang Lian
The challenge posed by opioid overdose has become a significant concern for health systems due to the complexities associated with drug prohibition, widespread clinical use, and potential abuse. In response, healthcare professionals have primarily concentrated on mitigating the hallucinogenic and respiratory depressant consequences of opioid overdose to minimize associated risks. However, it is crucial to acknowledge that most opioids possess the capacity to prolong the QT interval, particularly in cases of overdose, thereby potentially resulting in severe ventricular arrhythmias and even sudden death if timely intervention is not implemented...
April 17, 2024: Cardiovascular Toxicology
https://read.qxmd.com/read/38630325/chlordiazepoxide-against-signalling-receptor-and-regulatory-proteins-of-breast-cancer-a-structure-based-in-silico-approach
#7
JOURNAL ARTICLE
Ahad Amer Alsaiari, Amal F Gharib, Maha Mahfouz Bakhuraysah, Amani A Alrehaili, Shatha M Algethami, Hayfa Ali Alsaif, Norah Al Harthi, Mohammed Ageeli Hakami
Among the most prevalent forms of cancer are breast, lung, colon-rectum, and prostate cancers, and breast cancer is a major global health challenge, contributing to 2.26 million cases with approximately 685,000 deaths worldwide in 2020 alone, typically beginning in the milk ducts or lobules that produce and transport milk during lactation and it is becoming challenging to treat as the tissues are developing resistance, which makes urgent calls for new multitargeted drugs. The multitargeted drug design provides a better solution, simultaneously targeting multiple pathways, even when the drug resists one, it remains effective for others...
April 17, 2024: Medical Oncology
https://read.qxmd.com/read/38630254/exploring-the-potential-of-silymarin-loaded-nanovesicles-as-an-effective-drug-delivery-system-for-cancer-therapy-in-vivo-in-vitro-and-in-silico-experiments
#8
JOURNAL ARTICLE
Mohammad Reza Hajinezhad, Maryam Roostaee, Zahra Nikfarjam, Sanaz Rastegar, Ghasem Sargazi, Mahmood Barani, Saman Sargazi
We aimed to perform a comprehensive study on the development and characterization of silymarin (Syl)-loaded niosomes as potential drug delivery systems. The results demonstrate significant novelty and promising outcomes in terms of morphology, size distribution, encapsulation efficiency, in vitro release behavior, free energy profiles of Syl across the niosome bilayer, hydrogen bonding interactions, antimicrobial properties, cytotoxicity, and in vivo evaluations. The physical appearance, size, and morphology assessment of free niosomes and Syl-loaded niosomes indicated stable and well-formed vesicular structures suitable for drug delivery...
April 17, 2024: Naunyn-Schmiedeberg's Archives of Pharmacology
https://read.qxmd.com/read/38629840/influenza-a-virus-ns1-effector-domain-is-required-for-pa-x-mediated-host-shutoff-in-infected-cells
#9
JOURNAL ARTICLE
Juliette Bougon, Eileigh Kadijk, Lucie Gallot-Lavallee, Bruce A Curtis, Matthew Landers, John M Archibald, Denys A Khaperskyy
Many viruses inhibit general host gene expression to limit innate immune responses and gain preferential access to the cellular translational apparatus for their protein synthesis. This process is known as host shutoff. Influenza A viruses (IAVs) encode two host shutoff proteins: nonstructural protein 1 (NS1) and polymerase acidic X (PA-X). NS1 inhibits host nuclear pre-messenger RNA maturation and export, and PA-X is an endoribonuclease that preferentially cleaves host spliced nuclear and cytoplasmic messenger RNAs...
April 17, 2024: Journal of Virology
https://read.qxmd.com/read/38629733/characterization-of-the-metabolic-contributions-of-cytochrome-p450-isoforms-to-bicyclol-using-the-relative-activity-factor-method
#10
JOURNAL ARTICLE
Li-Jun Luo, Xiao Liu, Yan Li, Yang Li, Li Sheng
Bicyclol is a hepatoprotective agent widely used for treating chronic hepatitis and drug-induced liver injuries in clinics. The purpose of the study was to elucidate the contribution of CYP450 enzymes to the metabolism of bicyclol using the relative activity factor approach. After incubation with human liver microsomes and recombinant human liver CYP450 enzymes, the calculated contribution of CYP3A4 and 2C19 to the metabolism of bicyclol was 85.6-90.3% and 9.2-9.7%, respectively. The metabolism was interrupted in the presence of CYP3A4 and 2C19 selective inhibitors...
April 17, 2024: Journal of Asian Natural Products Research
https://read.qxmd.com/read/38629623/computational-repurposing-of-oncology-drugs-through-off-target-drug-binding-interactions-from-pharmacological-databases
#11
JOURNAL ARTICLE
Imogen R Walpole, Farzana Y Zaman, Peinan Zhao, Vikki M Marshall, Frank P Lin, David M Thomas, Mark Shackleton, Albert A Antolin, Malaka Ameratunga
PURPOSE: Systematic repurposing of approved medicines for another indication may accelerate drug development in oncology. We present a strategy combining biomarker testing with drug repurposing to identify new treatments for patients with advanced cancer. METHODS: Tumours were sequenced with the Illumina TruSight Oncology 500 (TSO-500) platform or the FoundationOne CDx panel. Mutations were screened by two medical oncologists and pathogenic mutations were categorised referencing literature...
April 2024: Clinical and Translational Medicine
https://read.qxmd.com/read/38629372/the-hgf-met-receptor-mediates-cytotoxic-effect-of-bacterial-cyclodipeptides-in-human-cervical-cancer-cells
#12
JOURNAL ARTICLE
Laura Hernández-Padilla, Mayra X Durán-Maldonado, Lorena Martínez-Alcantar, José S Rodríguez-Zavala, Jesus Campos-Garcia
BACKGROUND: Human cervix adenocarcinoma (CC) caused by papillomavirus is the third most common cancer among female malignant tumors. Bioactive compounds such as cyclodipeptides (CDPs) possess cytotoxic effects in human cervical cancer HeLa cells mainly by blocking the PI3K/Akt/mTOR pathway and subsequently inducing gene expression by countless transcription regulators. However, the upstream elements of signaling pathways have not been well studied. METHODS: To elucidate the cytotoxic and antiproliferative responses of the HeLa cell line to CDPs by a transcriptomic analysis previously carried out, we identified by immunochemical analyses, differential expression of genes related to the hepatocyte growth factor/mesenchymal-epithelial transition factor (HGF/MET) receptors...
April 15, 2024: Current Cancer Drug Targets
https://read.qxmd.com/read/38629358/comprehensive-analysis-and-experimental-validation-of-foxd2-as-a-novel-potential-prognostic-biomarker-associated-with-immune-infiltration-in-head-and-neck-squamous-cell-carcinoma
#13
JOURNAL ARTICLE
Hanping He, Feng Yuan, Ying Li, Guoliang Pi, Hongwei Shi, Yanping Li, Guang Han
BACKGROUND: The role of Forkhead Box D2 (FOXD2) in head and neck squamous cell carcinoma (HNSC) has never been studied. OBJECT: Our object was to explore the role of FOXD2 in HNSC. METHODS: Clinical data for patients with HNSC was obtained from TCGA. Our study examined the atypical expression of FOXD2 in both HNSC and pan-cancer, along with its diagnostic and prognostic implications, as well as the association between FOXD2 expression and clinical characteristics, immune infiltration, immune checkpoint genes, and MSI...
April 16, 2024: Current Computer-aided Drug Design
https://read.qxmd.com/read/38629356/network-pharmacology-combined-with-molecular-docking-approach-to-investigate-the-mechanism-of-chushiweiling-decoction-against-perianal-eczema
#14
JOURNAL ARTICLE
Ying Liu, Min Hao, Xinyue Fang, Yifei Qian, Yahui Wang, Shuai Yan
BACKGROUND: ChuShiWeiLing Decoction (CSWLD) is a famous classical Chinese prescription for the treatment of eczema with desirable effect in clinical practice. It has gradually exerted good curative effects on perianal eczema (PE) in recent years, but its specific mechanism is not elucidated yet. OBJECTIVE: This research explores the underlying pharmacological mechanism of CSWLD in addressing PE through network pharmacology combined with molecular docking strategy...
April 15, 2024: Current Pharmaceutical Design
https://read.qxmd.com/read/38629337/bisim-tool-a-binding-simulation-tool-to-aid-and-simplify-ligand-binding-assay-design-and-development
#15
JOURNAL ARTICLE
Lien Dejager, Sophia Banton, Patricia Marques, Gabriela Rinikova, Sabrina Lory, Elizabeth S Hickford, Carole Martin-Hamka, Mark Penney, Sasker Grootjans
Ligand-binding assays (LBAs) rely on the reversible, noncovalent binding between the analyte of interest and the assay reagents, and understanding their dynamic equilibrium is key to building robust LBA methods. Although the dynamic interplay of free and bound fractions can be calculated using mathematical models, these are not routinely applied. This approach is costly in terms of both assay development time and reagents, and can result in an under-exploration of the possible parameter combinations. Therefore, we have created a user-friendly simulation tool to facilitate LBA development (the BiSim Tool)...
April 17, 2024: Bioanalysis
https://read.qxmd.com/read/38629250/triazole-antifungal-drug-interactions-practical-considerations-for-excellent-prescribing
#16
JOURNAL ARTICLE
Russell Lewis, Saarah Niazi-Ali, Andrew McIvor, Souha S Kanj, Johan Maertens, Matteo Bassetti, Deborah Levine, Andreas H Groll, David W Denning
Systemic antifungal therapy is critical for reducing the mortality from many invasive and chronic fungal infections. Triazole antifungals are the most frequently prescribed antifungals but require attention to dosing and drug interactions. Nearly 600 severe drug-drug interactions and over 1100 moderate interactions requiring dose modifications are described or anticipated with systemic antifungal agents (see https://www.aspergillus.org.uk/antifungal-drug-interactions/). In this article, we address the common and less common, but serious, drug interactions observed in clinical practice with triazole antifungals, including a group of drugs that cannot be prescribed with all or most triazole antifungals (ivabradine, ranolazine, eplerenone, fentanyl, apomorphine, quetiapine, bedaquiline, rifampicin, rifabutin, sirolimus, phenytoin and carbamazepine)...
April 17, 2024: Journal of Antimicrobial Chemotherapy
https://read.qxmd.com/read/38629172/virtual-screening-docking-and-designing-of-new-vegf-inhibitors-as-anti-cancer-agents
#17
JOURNAL ARTICLE
Shivkant Patel, Vinay Ranjan Singh, Ashok Kumar Suman, Surabhi Jain, Ashim Kumar Sen
BACKGROUND: VEGFR-2 tyrosine kinase inhibitors are receiving a lot of attention as prospective anticancer medications in the current drug discovery process. OBJECTIVE: This work aims to explore the PubChem library for novel VEGFR-2 kinase inhibitors. 1H-Indazole-containing drug AXITINIB, or AG-013736 (FDA approved), is chosen as a rational molecule for drug design. This scaffold proved its efficiency in treating cancer and other diseases as well. METHODS: The present study used the virtual screening of the database, protein preparation, grid creation, and molecular docking analyses...
2024: Current Drug Discovery Technologies
https://read.qxmd.com/read/38628966/the-inactivation-of-tolc-sensitizes-escherichia-coli-to-perturbations-in-lipopolysaccharide-transport
#18
JOURNAL ARTICLE
Shawna Zhu, Mary Kate Alexander, Telmo O Paiva, Kenneth Rachwalski, Anh Miu, Yiming Xu, Vishal Verma, Mike Reichelt, Yves F Dufrêne, Eric D Brown, Georgina Cox
The Escherichia coli outer membrane channel TolC complexes with several inner membrane efflux pumps to export compounds across the cell envelope. All components of these complexes are essential for robust efflux activity, yet E. coli is more sensitive to antimicrobial compounds when tolC is inactivated compared to the inactivation of genes encoding the inner membrane drug efflux pumps. While investigating these susceptibility differences, we identified a distinct class of inhibitors targeting the core-lipopolysaccharide translocase, MsbA...
May 17, 2024: IScience
https://read.qxmd.com/read/38628946/exploring-altered-bovine-sperm-trajectories-by-sperm-tracking-in-unconfined-conditions
#19
JOURNAL ARTICLE
Luigi Fausto Canonico, Claudia De Clemente, Margarida Fardilha, Ana Filipa Ferreira, Maria Isabella Maremonti, David Dannhauser, Filippo Causa, Paolo Antonio Netti
Mammalian sperm motility is getting more relevant due to rising infertility rates worldwide, generating the need to improve conventional analysis and diagnostic approaches. Nowadays, computer assisted sperm analysis (CASA) technologies represent a popular alternative to manual examination which is generally performed by observing sperm motility in very confined geometries. However, under physiological conditions, sperm describe three-dimensional motility patterns which are not well reconstructed by the limited depth of standard acquisition chambers...
2024: Frontiers in Veterinary Science
https://read.qxmd.com/read/38628804/chemical-space-profiling-of-sars-cov-2-pl-pro-using-dna-encoded-focused-libraries
#20
JOURNAL ARTICLE
Xudong Wang, Ying Zhu, Qingyi Zhao, Weiwei Lu, Yechun Xu, Hangchen Hu, Xiaojie Lu
DNA-encoded library (DEL) technology is gaining attention for its rapid construction and deconvolution capabilities. Our study explored a novel strategy using rational DELs tailored for the SARS-CoV-2 papain-like protease, which revealed new fragments. Structural changes post-DEL screening mimic traditional medicinal chemistry lead optimization. We unveiled unique aromatic structures offering an alternative optimization path. Notably, we identified superior binding fragments targeting the BL2 groove. Derivative 16 emerged as the most promising by exhibiting IC50 values of 0...
April 11, 2024: ACS Medicinal Chemistry Letters
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