keyword
https://read.qxmd.com/read/38657076/trna-anticodon-cleavage-by-target-activated-crispr-cas13a-effector
#1
JOURNAL ARTICLE
Ishita Jain, Matvey Kolesnik, Konstantin Kuznedelov, Leonid Minakhin, Natalia Morozova, Anna Shiriaeva, Alexandr Kirillov, Sofia Medvedeva, Alexei Livenskyi, Laura Kazieva, Kira S Makarova, Eugene V Koonin, Sergei Borukhov, Konstantin Severinov, Ekaterina Semenova
Type VI CRISPR-Cas systems are among the few CRISPR varieties that target exclusively RNA. The CRISPR RNA-guided, sequence-specific binding of target RNAs, such as phage transcripts, activates the type VI effector, Cas13. Once activated, Cas13 causes collateral RNA cleavage, which induces bacterial cell dormancy, thus protecting the host population from the phage spread. We show here that the principal form of collateral RNA degradation elicited by Leptotrichia shahii Cas13a expressed in Escherichia coli cells is the cleavage of anticodons in a subset of transfer RNAs (tRNAs) with uridine-rich anticodons...
April 26, 2024: Science Advances
https://read.qxmd.com/read/38657058/evolution-and-genetic-architecture-of-sex-limited-polymorphism-in-cuckoos
#2
JOURNAL ARTICLE
Justin Merondun, Cristiana I Marques, Pedro Andrade, Swetlana Meshcheryagina, Ismael Galván, Sandra Afonso, Joel M Alves, Pedro M Araújo, Gennadiy Bachurin, Jennifer Balacco, Miklós Bán, Olivier Fedrigo, Giulio Formenti, Frode Fossøy, Attila Fülöp, Mikhail Golovatin, Sofia Granja, Chris Hewson, Marcel Honza, Kerstin Howe, Greger Larson, Attila Marton, Csaba Moskát, Jacquelyn Mountcastle, Petr Procházka, Yaroslav Red'kin, Ying Sims, Michal Šulc, Alan Tracey, Jonathan M D Wood, Erich D Jarvis, Mark E Hauber, Miguel Carneiro, Jochen B W Wolf
Sex-limited polymorphism has evolved in many species including our own. Yet, we lack a detailed understanding of the underlying genetic variation and evolutionary processes at work. The brood parasitic common cuckoo ( Cuculus canorus ) is a prime example of female-limited color polymorphism, where adult males are monochromatic gray and females exhibit either gray or rufous plumage. This polymorphism has been hypothesized to be governed by negative frequency-dependent selection whereby the rarer female morph is protected against harassment by males or from mobbing by parasitized host species...
April 26, 2024: Science Advances
https://read.qxmd.com/read/38656480/a-high-throughput-approach-for-photosynthesis-studies-in-a-brassicaceae-panel
#3
JOURNAL ARTICLE
Sofia A Bengoa Luoni, Francesco Garassino, Mark G M Aarts
The study of natural variations in photosynthesis in the Brassicaceae family offers the possibility of identifying mechanisms to enhance photosynthetic efficiency in crop plants. Indeed, this family, and particularly its tribe Brassiceae, has been shown to harbor species that have a higher-than-expected photosynthetic efficiency, possibly as a result of a complex evolutionary history. Over the past two decades, methods have been developed to measure photosynthetic efficiency based on chlorophyll fluorescence...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38656372/short-term-effects-of-obesity-surgery-versus-low-energy%C3%A2-diet-on-body-composition-and-tissue-specific-glucose-uptake-a-randomised-clinical-study-using-whole-body-integrated-18-f-fdg-pet-mri
#4
JOURNAL ARTICLE
Jan W Eriksson, Maria J Pereira, Christakis Kagios, Sofia Kvernby, Elin Lundström, Giovanni Fanni, Martin H Lundqvist, Björn C L Carlsson, Magnus Sundbom, Sambit Tarai, Mark Lubberink, Joel Kullberg, Ulf Risérus, Håkan Ahlström
AIMS/HYPOTHESIS: Obesity surgery (OS) and diet-induced weight loss rapidly improve insulin resistance. We aim to investigate the impact of either Roux-en-Y gastric bypass (RYGB) or sleeve gastrectomy (SG) surgery compared with a diet low in energy (low-calorie diet; LCD) on body composition, glucose control and insulin sensitivity, assessed both at the global and tissue-specific level in individuals with obesity but not diabetes. METHODS: In this parallel group randomised controlled trial, patients on a waiting list for OS were randomised (no blinding, sealed envelopes) to either undergo surgery directly or undergo an LCD before surgery...
April 24, 2024: Diabetologia
https://read.qxmd.com/read/38656104/degradable-%C3%AF-conjugated-polymers
#5
REVIEW
Azalea Uva, Sofia Michailovich, Nathan Sung Yuan Hsu, Helen Tran
The integration of next-generation electronics into society is rapidly reshaping our daily interactions and lifestyles, revolutionizing communication and engagement with the world. Future electronics promise stimuli-responsive features and enhanced biocompatibility, such as skin-like health monitors and sensors embedded in food packaging, transforming healthcare and reducing food waste. Imparting degradability may reduce the adverse environmental impact of next-generation electronics and lead to opportunities for environmental and health monitoring...
April 24, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38656092/how-to-standardize-the-diagnostic-approach-to-pituitary-neuroendocrine-tumors
#6
JOURNAL ARTICLE
Sofia Asioli, Federica Guaraldi, Matteo Zoli, Diego Mazzatenta, Chiara Villa
Pituitary tumors present heterogeneous biochemical, clinico-radiological, and histological features. Although histologically benign, a non-negligible number of cases present an unpredictable aggressive behavior with local invasiveness, partial/complete resistance to treatment and/or recurrence after surgery, and, rarely, metastasize, overall leading to a significant increase of morbidity, and, thus, requiring skilled multidisciplinary management in referral Centers. Histopathological diagnosis is essential to stratify cancer patient risk and uniform follow-up among Centers...
April 24, 2024: Minerva endocrinology
https://read.qxmd.com/read/38655297/somatotype-and-bioelectrical-impedance-vector-analysis-of-italian-crossfit%C3%A2-practitioners
#7
JOURNAL ARTICLE
Álex Cebrián-Ponce, Sofia Serafini, Cristian Petri, Marta Carrasco-Marginet, Pascal Izzicupo, Gabriele Mascherini
OBJECTIVES: CrossFit® is a high-intensity sport characterized by various workouts that require strength, speed, endurance, or agility, impacting participants' body composition. This observational study aimed to determine the morphological (anthropometrical and bioelectrical) profile of CrossFit® athletes and to compare them with other athletic populations. METHODS: Anthropometrical measurements and bioelectrical vector analysis (classic and specific approaches) were performed on 145 CrossFit® practitioners (107 men aged 30...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38654924/undiagnosed-rasopathies-in-infertile-men
#8
JOURNAL ARTICLE
Anna-Grete Juchnewitsch, Kristjan Pomm, Avirup Dutta, Erik Tamp, Anu Valkna, Kristiina Lillepea, Eisa Mahyari, Stanislav Tjagur, Galina Belova, Viljo Kübarsepp, Helen Castillo-Madeen, Antoni Riera-Escamilla, Lisanna Põlluaas, Liina Nagirnaja, Olev Poolamets, Vladimir Vihljajev, Mailis Sütt, Nassim Versbraegen, Sofia Papadimitriou, Robert I McLachlan, Keith A Jarvi, Peter N Schlegel, Sven Tennisberg, Paul Korrovits, Katinka Vigh-Conrad, Moira K O'Bryan, Kenneth I Aston, Tom Lenaerts, Donald F Conrad, Laura Kasak, Margus Punab, Maris Laan
RASopathies are syndromes caused by congenital defects in the Ras/mitogen-activated protein kinase (MAPK) pathway genes, with a population prevalence of 1 in 1,000. Patients are typically identified in childhood based on diverse characteristic features, including cryptorchidism (CR) in >50% of affected men. As CR predisposes to spermatogenic failure (SPGF; total sperm count per ejaculate 0-39 million), we hypothesized that men seeking infertility management include cases with undiagnosed RASopathies. Likely pathogenic or pathogenic (LP/P) variants in 22 RASopathy-linked genes were screened in 521 idiopathic SPGF patients (including 155 CR cases) and 323 normozoospermic controls using exome sequencing...
2024: Frontiers in Endocrinology
https://read.qxmd.com/read/38653608/pityriasis-rubra-pilaris-after-covid-19-vaccination-successful-treatment-with-ustekinumab
#9
Bárbara Vieira Granja, Patrícia Amoedo, Nuno Preto Gomes, Catarina Costa, Filomena Azevedo, Sofia Magina
No abstract text is available yet for this article.
April 22, 2024: Anais Brasileiros de Dermatologia
https://read.qxmd.com/read/38651692/discovery-of-c-linked-nucleoside-analogues-with-antiviral-activity-against-sars-cov-2
#10
JOURNAL ARTICLE
Eugen F Mesaros, Benjamin J Dugan, Min Gao, Muhammad Sheraz, Kayleigh McGovern-Gooch, Fran Xu, Kristi Yi Fan, Duyan Nguyen, Steven G Kultgen, Aaron Lindstrom, Kim Stever, Breanna Tercero, Randall J Binder, Fei Liu, Holly M Micolochick Steuer, Nagraj Mani, Troy O Harasym, Emily P Thi, Andrea Cuconati, Bruce D Dorsey, Andrew G Cole, Angela M Lam, Michael J Sofia
The recent COVID-19 pandemic underscored the limitations of currently available direct-acting antiviral treatments against acute respiratory RNA-viral infections and stimulated major research initiatives targeting anticoronavirus agents. Two novel nsp5 protease (MPro) inhibitors have been approved, nirmatrelvir and ensitrelvir, along with two existing nucleos(t)ide analogues repurposed as nsp12 polymerase inhibitors, remdesivir and molnupiravir, but a need still exists for therapies with improved potency and systemic exposure with oral dosing, better metabolic stability, and reduced resistance and toxicity risks...
April 23, 2024: ACS Infectious Diseases
https://read.qxmd.com/read/38651310/parkinsonism-originates-in-a-discrete-secondary-and-dystonia-in-a-primary-motor-cortical-basal-ganglia-subcircuit
#11
JOURNAL ARTICLE
Deepak Kumbhare, George Weistroffer, Sofia Goyanaga, Zi Ling Huang, Jacob Blagg, Mark S Baron
Although manifesting contrasting phenotypes, Parkinson's disease and dystonia, the two most common movement disorders, can originate from similar pathophysiology. Previously, we demonstrated that lesioning (silencing) of a discrete dorsal region in the globus pallidus (rodent equivalent to globus pallidus externa) in rats and produced parkinsonism, while lesioning a nearby ventral hotspot-induced dystonia. Presently, we injected fluorescent-tagged multi-synaptic tracers into these pallidal hotspots (n = 36 Long Evans rats) and permitted 4 days for the viruses to travel along restricted connecting pathways and reach the motor cortex before sacrificing the animals...
April 2024: Journal of Neuroscience Research
https://read.qxmd.com/read/38651291/perceptions-and-current-practices-in-patient-centered-care-a-qualitative-study-of-ryan-white-hiv-providers-in-south-florida
#12
JOURNAL ARTICLE
Jennifer M Knight, Melissa K Ward, Sofia Fernandez, Becky L Genberg, Mary Catherine Beach, Robert A Ladner, Mary Jo Trepka
Background: Patient-centered care (PCC) improves HIV adherence and retention, though lack of consensus on its conceptualization and understanding how it is interpreted has hindered implementation. Methods: We recruited 20 HIV providers at Ryan White Programs in FL for in-depth interviews. Thematic analysis identified core consistencies pertaining to: 1) provider perceptions, 2) current practices promoting PCC. Results: Provider perceptions of PCC emerged under four domains: 1) holistic, 2) individualized care, 3) respect for comfort and security, and 4) patient engagement and partnership...
2024: Journal of the International Association of Providers of AIDS Care
https://read.qxmd.com/read/38650577/effects-of-resistance-training-on-sleep-quality-and-disorders-among-individuals-diagnosed-with-cancer-a-systematic-review-and-meta-analysis-of-randomized-controlled-trials
#13
REVIEW
Dora Maric, Salvatore Ficarra, Luca Di Bartolo, Carlo Rossi, Zoi Asimakopoulou, Apostolos Vantarakis, Ana Carbonell-Baeza, David Jiménez-Pavón, Beatriz Gomes, Paula Tavares, Rebecca Baxter, Susanna Pusa, Petra Thaller, Sofia Papakonstantinou, Musa Kirkar, Francesca Glorioso, Marina Galioto, Ambra Gentile, Ewan Thomas, Antonino Bianco
BACKGROUND: Sleep disorders are often complained by cancer patients and can last years after the end of therapies, leading to different negative consequences. Non-pharmacological strategies such as exercise interventions may be considered to counteract this phenomenon. The literature supports the beneficial effects of aerobic training (AT), while evidence on resistance training (RT) is scarce. Accordingly, our systematic review aims to investigate the potential novel effect of RT on sleep outcomes in cancer survivors...
April 2024: Cancer Medicine
https://read.qxmd.com/read/38649442/inducing-perceived-group-variability-triggers-the-incorporation-of-counter-stereotypic-information-into-a-generalized-stereotype-change
#14
JOURNAL ARTICLE
Ana Sofia Santos, L Garcia-Marques, T A Palma, J Reese
Perceived variability is the extent to which individuals perceive group members as being similar to one another. Previous research has focused on how: group variability is perceived (and measured); information indicative of group heterogeneity can lead to reductions in stereotypicality; or how stereotype-inconsistent information can result into increased perceived variability. The present combines the three lines of research into a single research venue. In previous studies the stereotypicality of a group representation was influenced by priming stereotype-unrelated traits in an unrelated-context, prior to stereotype measurement; but priming counter-stereotypic traits had no effect on stereotypicality, although it boosted perceptions of group's variability...
April 22, 2024: Scientific Reports
https://read.qxmd.com/read/38648778/risk-of-chronic-kidney-disease-in-260-patients-with-lupus-nephritis-analysis-of-a-nationwide-multicentre-cohort-with-up-to-35-years-of-follow-up
#15
JOURNAL ARTICLE
Filipa Farinha, Sofia Barreira, Maura Couto, Margarida Cunha, Diogo Fonseca, Raquel Freitas, Luís Inês, Mariana Luís, Carla Macieira, Ana R Prata, Joana Rodrigues, Bernardo Santos, Rita Torres, Ruth J Pepper, Anisur Rahman, Maria J Santos
OBJECTIVES: To compare proliferative (PLN) and membranous (MLN) lupus nephritis (LN) regarding clinical and laboratory presentation and long-term outcomes; To investigate predictors of progression to chronic kidney disease (CKD). METHODS: Multicentre observational study, with retrospective analysis of a prospective cohort, using data from the Rheumatic Diseases Portuguese Registry-Reuma.pt. Patients with biopsy-proven PLN, MLN and mixed LN were included. Cox regression survival analysis was used to investigate predictors of CKD...
April 22, 2024: Rheumatology
https://read.qxmd.com/read/38648766/role-of-i182-r187-and-k188-amino-acid-residues-in-the-catalytic-domain-of-hiv-1-integrase-in-the-processes-of-reverse-transcription-and-integration
#16
JOURNAL ARTICLE
Tatiana F Kikhai, Yulia Yu Agapkina, Tatiana A Prikazchikova, Maria V Vdovina, Sofia P Shekhtman, Sofia V Fomicheva, Sergey P Korolev, Marina B Gottikh
Structural organization of HIV-1 integrase is based on a tetramer formed by two protein dimers. Within this tetramer, the catalytic domain of one subunit of the first dimer interacts with the N-terminal domain of the second dimer subunit. It is the tetrameric structure that allows both ends of the viral DNA to be correctly positioned relative to the cellular DNA and to realize catalytic functions of integrase, namely 3'-processing and strand transfer. However, during the HIV-1 replicative cycle, integrase is responsible not only for the integration stage, it is also involved in reverse transcription and is necessary at the stage of capsid formation of the newly formed virions...
March 2024: Biochemistry. Biokhimii︠a︡
https://read.qxmd.com/read/38648721/attentional-erps-in-consumers-of-smoked-and-insufflated-cocaine-associated-with-neuropsychological-performance
#17
JOURNAL ARTICLE
Agustina Aragón-Daud, Sofía Milagros Oberti De Luca, Sofía Schurmann Vignaga, Pilar Prado, Rosario Figueras, Lucia Lizaso, María Luz González-Gadea, Facundo Manes, Marcelo Cetkovich, Carla Pallavicini, Teresa Torralva, Laura Alethia de la Fuente
BACKGROUND: Cocaine consumption is associated with reduced attentional event-related potentials (ERPs), namely P3a and P3b, indicating bottom-up and top-down deficits respectively. At cognitive level, these impairments are larger for faster routes of administration (e.g., smoked cocaine [SC]) than slower routes (e.g., insufflated cocaine [IC]). Here we assess these ERPs considering the route of cocaine administration. We hypothesized that SC dependent (SCD) would exhibit reduced amplitude of the P3a, while both SCD and IC dependent (ICD) would show reduced amplitude of the P3b...
April 10, 2024: Drug and Alcohol Dependence
https://read.qxmd.com/read/38647261/laws-governing-access-to-sexual-health-services-and-information-contents-protections-and-restrictions
#18
JOURNAL ARTICLE
Laura Ferguson, Sarah Emoto, Sofia Gruskin
Access to sexual health services and information is critical to achieving the highest attainable standard of sexual health, and enabling legal environments are key to advancing progress in this area. In determining overall alignment with human rights standards to respect, protect, and fulfil sexual health-related rights without discrimination, there are many aspects of laws, including their specificity and content, which impact which sexual health services and information are availed, which are restricted, and for whom...
December 2024: Sexual and reproductive health matters
https://read.qxmd.com/read/38647198/rescuing-a-troubled-tolcapone-with-pegylated-plga-nanoparticles-design-characterization-and-hepatotoxicity-evaluation
#19
JOURNAL ARTICLE
Miguel Pinto, Cláudia Sofia Machado, Sandra Barreiro, Francisco J Otero-Espinar, Fernando Remião, Fernanda Borges, Carlos Fernandes
Tolcapone is an orally active catechol-O-methyltransferase (COMT) inhibitor used as adjuvant therapy in Parkinson's disease. However, it has a highly hepatotoxic profile, as recognized by the U.S. Food and Drug Administration. As a possible solution, nanoscience brought us several tools in the development of new functional nanomaterials with tunable physicochemical properties, which can be part of a solution to solve several drawbacks, including drug's short half-life and toxicity. This work aims to use PEGylated poly(lactic- co -glycolic acid) (PLGA) nanoparticles as a stable carrier with lower hydrodynamic size and polydispersity to encapsulate tolcapone in order to overcome its therapeutic drawbacks...
April 22, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38646961/coma-in-adult-cerebral-venous-thrombosis-the-beast-study
#20
JOURNAL ARTICLE
Redoy Ranjan, Gie Ken-Dror, Ida Martinelli, Elvira Grandone, Sini Hiltunen, Erik Lindgren, Maurizio Margaglione, Veronique Le Cam Duchez, Aude Triquenot Bagan, Marialuisa Zedde, Nicola Giannini, Ynte M Ruigrok, Bradford B Worrall, Jennifer J Majersik, Jukka Putaala, Elena Haapaniemi, Susanna M Zuurbier, Matthijs C Brouwer, Serena M Passamonti, Maria Abbattista, Paolo Bucciarelli, Robin Lemmens, Emanuela Pappalardo, Paolo Costa, Marina Colombi, Diana Aguiar de Sousa, Sofia Rodrigues, Patrícia Canhão, Aleksander Tkach, Rosa Santacroce, Giovanni Favuzzi, Antonio Arauz, Donatella Colaizzo, Kostas Spengos, Amanda Hodge, Reina Ditta, Alessandro Pezzini, Jonathan M Coutinho, Vincent Thijs, Katarina Jood, Turgut Tatlisumak, José M Ferro, Pankaj Sharma
BACKGROUND AND PURPOSE: Coma is an independent predictor of poor clinical outcomes in cerebral venous thrombosis (CVT). We aimed to describe the association of age, sex, and radiological characteristics of adult coma patients with CVT. METHODS: We used data from the international, multicentre prospective observational BEAST (Biorepository to Establish the Aetiology of Sinovenous Thrombosis) study. Only positively associated variables with coma with <10% missing data in univariate analysis were considered for the multivariate logistic regression model...
April 22, 2024: European Journal of Neurology
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