keyword
https://read.qxmd.com/read/37407805/the-role-of-the-mitochondrial-ribosomal-protein-family-in-detecting-hepatocellular-carcinoma-and-predicting-prognosis-immune-features-and-drug-sensitivity
#1
JOURNAL ARTICLE
Jin-Wei Zhao, Wei-Yi Zhao, Xin-Hua Cui, Lin Xing, Jia-Cheng Shi, Lu Yu
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most common types of malignant tumors, with a slow onset, rapid progression, and frequent recurrence. Previous research has implicated mitochondrial ribosomal genes in the development, metastasis, and prognosis of various cancers. However, further research is necessary to establish a link between mitochondrial ribosomal protein (MRP) family expression and HCC diagnosis, prognosis, ferroptosis-related gene (FRG) expression, m6A modification-related gene expression, tumor immunity, and drug sensitivity...
July 5, 2023: Clinical & Translational Oncology
https://read.qxmd.com/read/36835202/co-expression-analysis-of-airway-epithelial-transcriptome-in-asthma-patients-with-eosinophilic-vs-non-eosinophilic-airway-infiltration
#2
JOURNAL ARTICLE
Pawel Kozlik-Siwiec, Sylwia Buregwa-Czuma, Izabela Zawlik, Sylwia Dziedzina, Aleksander Myszka, Joanna Zuk-Kuwik, Andzelika Siwiec-Kozlik, Jacek Zarychta, Krzysztof Okon, Lech Zareba, Jerzy Soja, Bogdan Jakiela, Michał Kepski, Jan G Bazan, Stanislawa Bazan-Socha
Asthma heterogeneity complicates the search for targeted treatment against airway inflammation and remodeling. We sought to investigate relations between eosinophilic inflammation, a phenotypic feature frequent in severe asthma, bronchial epithelial transcriptome, and functional and structural measures of airway remodeling. We compared epithelial gene expression, spirometry, airway cross-sectional geometry (computed tomography), reticular basement membrane thickness (histology), and blood and bronchoalveolar lavage (BAL) cytokines of n = 40 moderate to severe eosinophilic (EA) and non-eosinophilic asthma (NEA) patients distinguished by BAL eosinophilia...
February 14, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36822197/mitochondrial-ribosomal-protein-l14-promotes-cell-growth-and-invasion-through-modulating-ros-in-thyroid-cancer
#3
JOURNAL ARTICLE
Hae Jong Kim, QuocKhanh Nguyen, Seung-Nam Jung, Mi Ae Lim, Chan Oh, Yudan Piao, YanLi Jin, Yea Eun Kang, Ju-Hui Kim, Young Il Kim, Jae Won Chang, Ho-Ryun Won, Bon Seok Koo
OBJECTIVES: The mitochondrial ribosomal protein L14 (MRPL14) is encoded by a nuclear gene and participates in mitochondrial protein translation. In this study, we aimed to investigate the role of MRPL14 in thyroid carcinoma. METHODS: We investigated the association of expression of MRPL14 and clinicopathological features using the The Cancer Genome Atlas (TCGA) and Chungnam National University Hospital (CNUH) databases. Functional studies of MRPL14, including proliferation, migration, invasion, mitochondrial oxidative phosphorylation and reactive oxygen species (ROS) production, were performed in papillary thyroid carcinoma (PTC) cell lines (B-CPAP and KTC-1)...
February 23, 2023: Clinical and Experimental Otorhinolaryngology
https://read.qxmd.com/read/36778919/identification-and-analysis-of-crucial-genes-in-h-pylori-associated-gastric-cancer-using-an-integrated-bioinformatics-approach
#4
JOURNAL ARTICLE
Wei Ding, Huaji Jiang, Nianyuan Ye, Ling Zhuang, Zhiping Yuan, Yulin Tan, Wenbo Xue, Xuezhong Xu
BACKGROUND: The relationship between H. pylori infection and gastric cancer (GC) has been widely studied, and H. pylori is considered as the main factor. Utilizing bioinformatics analysis, this study examined gene signatures related to progressing H. pylori -associated GC. MATERIALS AND METHODS: The dataset GSE13195 was chosen to search for abnormally expressed genes in H. pylori -associated GC and normal tissues. The TCGA-STAD database was chosen to verify the expression of key genes in GC and normal tissues...
2023: Journal of Oncology
https://read.qxmd.com/read/36465357/establishment-of-a-risk-model-correlated-with-metabolism-based-on-rna-binding-proteins-associated-with-cell-pyroptosis-in-acute-myeloid-leukemia
#5
JOURNAL ARTICLE
Ting Bin, Chao Lin, Fang-Jie Liu, Ying Wang, Xiao-Jun Xu, Dong-Jun Lin, Jing Tang, Bo Lu
BACKGROUND: RNA-binding protein (RBP) regulates acute myeloid leukemia (AML) by participating in mRNA editing and modification. Pyroptosis also plays an immunomodulatory function in AML. Therefore, this study aimed to identify pyroptosis-related RBP genes that could predict the prognosis of AML patients. METHODS: AML related expression data were downloaded from the UCSC website and Gene Expression Omnibus (GEO) database. Pyroptosis-RPB-related differentially expressed genes (PRBP-DEGs) were conducted with a protein-protein interactions (PPI) network to screen out the key PRBP-DEGs, based on which a risk model was constructed by Cox analysis, and evaluated by plotting Receiver operating characteristic (ROC) curves and survival curves...
2022: Frontiers in Oncology
https://read.qxmd.com/read/33513983/identification-of-key-pathways-and-genes-related-to-the-development-of-hair-follicle-cycle-in-cashmere-goats
#6
JOURNAL ARTICLE
Jianfang Wang, Jie Sui, Chao Mao, Xiaorui Li, Xingyi Chen, Chengcheng Liang, Xiaohui Wang, Si-Hu Wang, Cunling Jia
The development of hair follicle in cashmere goats shows significant periodic change, as with mice and humans. However, for cashmere goat with double-coat, the periodic change may be due to other regulatory molecules and signal pathways. To understand the mechanism of periodic development of hair follicle, we performed a weighted gene coexpression network analysis (WGCNA) to mine key genes and establish an interaction network by utilizing the NCBI public dataset. Ten coexpression modules, including 7689 protein-coding genes, were constructed by WGCNA, six of which are considered to be significantly related to the development of the hair follicle cycle...
January 27, 2021: Genes
https://read.qxmd.com/read/23569218/dna-microarray-and-mirna-analyses-reinforce-the-classification-of-follicular-thyroid-tumors
#7
MULTICENTER STUDY
Caroline Jacques, Delphine Guillotin, Jean-Fred Fontaine, Brigitte Franc, Delphine Mirebeau-Prunier, Audrey Fleury, Yves Malthiery, Frédérique Savagner
CONTEXT: Focusing on mitochondrial function and thyroid tumorigenesis, we used an integrative approach to identify relevant biomarkers for borderline thyroid lesions. DESIGN: Using cDNA and microRNA (miRNA) microarrays and quantitative RT-PCR analysis (qPCR), we explored samples of various types of thyroid tumors including 25 benign follicular adenomas represented by macrofollicular variants of thyroid adenomas, 38 oncocytic variants of follicular thyroid tumors, 19 papillary thyroid carcinomas, and 10 tumors of uncertain malignant potential, together with 53 normal thyroid tissue samples...
May 2013: Journal of Clinical Endocrinology and Metabolism
https://read.qxmd.com/read/23171548/the-conserved-interaction-of-c7orf30-with-mrpl14-promotes-biogenesis-of-the-mitochondrial-large-ribosomal-subunit-and-mitochondrial-translation
#8
JOURNAL ARTICLE
Stephen Fung, Tamiko Nishimura, Florin Sasarman, Eric A Shoubridge
Mammalian mitochondria harbor a dedicated translation apparatus that is required for the synthesis of 13 mitochondrial DNA (mtDNA)-encoded polypeptides, all of which are essential components of the oxidative phosphorylation (OXPHOS) complexes. Little is known about the mechanism of assembly of the mitoribosomes that catalyze this process. Here we show that C7orf30, a member of the large family of DUF143 proteins, associates with the mitochondrial large ribosomal subunit (mt-LSU). Knockdown of C7orf30 by short hairpin RNA (shRNA) does not alter the sedimentation profile of the mt-LSU, but results in the depletion of several mt-LSU proteins and decreased monosome formation...
February 2013: Molecular Biology of the Cell
https://read.qxmd.com/read/23037145/association-of-genes-on-chromosome-6-grik2-tmem217-and-tmem63b-linked-to-mrpl14-with-diabetic-retinopathy
#9
COMPARATIVE STUDY
Hui-Ju Lin, Yu-Chuen Huang, Jane-Ming Lin, Jer-Yuarn Wu, Liuh-An Chen, Fuu-Jen Tsai
PURPOSE: Diabetic retinopathy (DR) is one of the most common complications of diabetes mellitus (DM). The susceptibility genes responsible for increasing the risk for DR in type 2 diabetes (T2D) were sought in this study. METHODS: A case-control study was carried out, comprising 749 unrelated T2D individuals with (n = 174) and without (n = 575) DR. Genotypic distributions of single nucleotide polymorphisms (SNPs) were determined for subjects with and without DR...
2013: Ophthalmologica. Journal International D'ophtalmologie
https://read.qxmd.com/read/19616644/phenotypic-suppression-of-the-drosophila-mitochondrial-disease-like-mutant-tko-25t-by-duplication-of-the-mutant-gene-in-its-natural-chromosomal-context
#10
JOURNAL ARTICLE
Esko Kemppainen, Daniel Jose Moreno Fernández-Ayala, Laura C A Galbraith, Kevin M C O'Dell, Howard T Jacobs
A mutation in the Drosophila gene technical knockout (tko(25t)), encoding mitoribosomal protein S12, phenocopies human mitochondrial disease. We isolated three spontaneous X-dominant suppressors of tko(25t) (designated Weeble), exhibiting almost wild-type phenotype and containing overlapping segmental duplications including the mutant allele, plus a second mitoribosomal protein gene, mRpL14. Ectopic, expressed copies of tko(25t) and mRpL14 conferred no phenotypic suppression. When placed over a null allele of tko, Weeble retained the mutant phenotype, even in the presence of additional transgenic copies of tko(25t)...
September 2009: Mitochondrion
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