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PDH AND NAD

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https://www.readbyqxmd.com/read/29778095/establishing-an-innovative-carbohydrate-metabolic-pathway-for-efficient-production-of-2-keto-l-gulonic-acid-in-ketogulonicigenium-robustum-initiated-by-intronic-promoters
#1
Cai-Yun Wang, Ye Li, Zi-Wei Gao, Li-Cheng Liu, Meng-Yue Zhang, Tian-Yuan Zhang, Chun-Fu Wu, Yi-Xuan Zhang
BACKGROUND: 2-Keto-L-gulonic acid (2-KGA), the precursor of vitamin C, is currently produced by two-step fermentation. In the second step, L-sorbose is transformed into 2-KGA by the symbiosis system composed of Ketogulonicigenium vulgare and Bacillus megaterium. Due to the different nutrient requirements and the uncertain ratio of the two strains, the symbiosis system significantly limits strain improvement and fermentation optimization. RESULTS: In this study, Ketogulonicigenium robustum SPU_B003 was reported for its capability to grow well independently and to produce more 2-KGA than that of K...
May 19, 2018: Microbial Cell Factories
https://www.readbyqxmd.com/read/29349500/exogenous-h-2-s-switches-cardiac-energy-substrate-metabolism-by-regulating-sirt3-expression-in-db-db-mice
#2
Yu Sun, Zhiliang Tian, Ning Liu, Linxue Zhang, Zhaopeng Gao, Xiaojiao Sun, Miao Yu, Jichao Wu, Fan Yang, Yajun Zhao, Huan Ren, He Chen, Dechao Zhao, Yan Wang, Shiyun Dong, Changqing Xu, Fanghao Lu, Weihua Zhang
Hydrogen sulfide (H2 S) is involved in diverse physiological functions, such as anti-hypertension, anti-proliferation, regulating ATP synthesis, and reactive oxygen species production. Sirtuin 3 (SIRT3) is a NAD + -dependent deacetylase that regulates mitochondrial energy metabolism. The role of H2 S in energy metabolism in diabetic cardiomyopathy (DCM) may be related to regulate SIRT3 expression; however, this role remains to be elucidated. We hypothesized that exogenous H2 S could switch cardiac energy metabolic substrate preference by lysine acetylation through promoting the expression of SIRT3 in cardiac tissue of db/db mice...
April 2018: Journal of Molecular Medicine: Official Organ of the "Gesellschaft Deutscher Naturforscher und Ärzte"
https://www.readbyqxmd.com/read/28964917/redox-imbalance-due-to-the-loss-of-mitochondrial-nad-p-transhydrogenase-markedly-aggravates-high-fat-diet-induced-fatty-liver-disease-in-mice
#3
Claudia D C Navarro, Tiago R Figueira, Annelise Francisco, Genoefa A Dal'Bó, Juliana A Ronchi, Juliana C Rovani, Cecilia A F Escanhoela, Helena C F Oliveira, Roger F Castilho, Anibal E Vercesi
The mechanisms by which a high fat diet (HFD) promotes non-alcoholic fatty liver disease (NAFLD) appear to involve liver mitochondrial dysfunctions and redox imbalance. We hypothesized that a HFD would increase mitochondrial reliance on NAD(P)-transhydrogenase (NNT) as the source of NADPH for antioxidant systems that counteract NAFLD development. Therefore, we studied HFD-induced liver mitochondrial dysfunctions and NAFLD in C57Unib.B6 congenic mice with (Nnt(+/+)) or without (Nnt(-/-)) NNT activity; the spontaneously mutated allele (Nnt(-/-)) was inherited from the C57BL/6J mouse substrain...
September 28, 2017: Free Radical Biology & Medicine
https://www.readbyqxmd.com/read/28900027/sirtuin-lipoamidase-activity-is-conserved-in-bacteria-as-a-regulator-of-metabolic-enzyme-complexes
#4
Elizabeth A Rowland, Todd M Greco, Caroline K Snowden, Anne L McCabe, Thomas J Silhavy, Ileana M Cristea
Lipoic acid is an essential metabolic cofactor added as a posttranslational modification on several multimeric enzyme complexes. These protein complexes, evolutionarily conserved from bacteria to humans, are core regulators of cellular metabolism. While the multistep enzymatic process of adding lipoyl modifications has been well characterized in Escherichia coli , the enzyme required for the removal of these lipoyl moieties (i.e., a lipoamidase or delipoylase) has not yet been identified. Here, we describe our discovery of sirtuins as lipoamidases in bacteria and establish their conserved substrates...
September 12, 2017: MBio
https://www.readbyqxmd.com/read/28242228/protein-s-glutathionylation-alters-superoxide-hydrogen-peroxide-emission-from-pyruvate-dehydrogenase-complex
#5
Marisa O'Brien, Julia Chalker, Liam Slade, Danielle Gardiner, Ryan J Mailloux
Pyruvate dehydrogenase (Pdh) is a vital source of reactive oxygen species (ROS) in several different tissues. Pdh has also been suggested to serve as a mitochondrial redox sensor. Here, we report that O2 •- / H2 O2 emission from pyruvate dehydrogenase (Pdh) is altered by S-glutathionylation. Glutathione disulfide (GSSG) amplified O2 •- / H2 O2 production by purified Pdh during reverse electron transfer (RET) from NADH. Thiol oxidoreductase glutaredoxin-2 (Grx2) reversed these effects confirming that Pdh is a target for S-glutathionylation...
May 2017: Free Radical Biology & Medicine
https://www.readbyqxmd.com/read/27809489/structural-insights-into-the-drosophila-melanogaster-retinol-dehydrogenase-a-member-of-the-short-chain-dehydrogenase-reductase-family
#6
Lukas Hofmann, Yaroslav Tsybovsky, Nathan S Alexander, Darwin Babino, Nicole Y Leung, Craig Montell, Surajit Banerjee, Johannes von Lintig, Krzysztof Palczewski
The 11-cis-retinylidene chromophore of visual pigments isomerizes upon interaction with a photon, initiating a downstream cascade of signaling events that ultimately lead to visual perception. 11-cis-Retinylidene is regenerated through enzymatic transformations collectively called the visual cycle. The first and rate-limiting enzymatic reaction within this cycle, i.e., the reduction of all-trans-retinal to all-trans-retinol, is catalyzed by retinol dehydrogenases. Here, we determined the structure of Drosophila melanogaster photoreceptor retinol dehydrogenase (PDH) isoform C that belongs to the short-chain dehydrogenase/reductase (SDR) family...
November 29, 2016: Biochemistry
https://www.readbyqxmd.com/read/27083875/engineering-a-synthetic-anaerobic-respiration-for-reduction-of-xylose-to-xylitol-using-nadh-output-of-glucose-catabolism-by-escherichia-coli-ai21
#7
Andrew Iverson, Erin Garza, Ryan Manow, Jinhua Wang, Yuanyuan Gao, Scott Grayburn, Shengde Zhou
BACKGROUND: Anaerobic rather than aerobic fermentation is preferred for conversion of biomass derived sugars to high value redox-neutral and reduced commodities. This will likely result in a higher yield of substrate to product conversion and decrease production cost since substrate often accounts for a significant portion of the overall cost. To this goal, metabolic pathway engineering has been used to optimize substrate carbon flow to target products. This approach works well for the production of redox neutral products such as lactic acid from redox neutral sugars using the reducing power NADH (nicotinamide adenine dinucleotide, reduced) generated from glycolysis (2 NADH per glucose equivalent)...
April 16, 2016: BMC Systems Biology
https://www.readbyqxmd.com/read/26777799/modeling-non-linear-kinetics-of-hyperpolarized-1-13-c-pyruvate-in-the-crystalloid-perfused-rat-heart
#8
E Mariotti, M R Orton, O Eerbeek, J F Ashruf, C J Zuurbier, R Southworth, T R Eykyn
Hyperpolarized (13)C MR measurements have the potential to display non-linear kinetics. We have developed an approach to describe possible non-first-order kinetics of hyperpolarized [1-(13)C] pyruvate employing a system of differential equations that agrees with the principle of conservation of mass of the hyperpolarized signal. Simultaneous fitting to a second-order model for conversion of [1-(13)C] pyruvate to bicarbonate, lactate and alanine was well described in the isolated rat heart perfused with Krebs buffer containing glucose as sole energy substrate, or glucose supplemented with pyruvate...
April 2016: NMR in Biomedicine
https://www.readbyqxmd.com/read/26342067/feeding-the-fibrillating-heart-dichloroacetate-improves-cardiac-contractile-dysfunction-following-vf
#9
Mohammed Ali Azam, Cory S Wagg, Stéphane Massé, Talha Farid, Patrick F H Lai, Marjan Kusha, John Asta, Rafael Jaimes, Sarah Kuzmiak-Glancy, Matthew W Kay, Gary D Lopaschuk, Kumaraswamy Nanthakumar
Ventricular fibrillation (VF) is an important cause of sudden cardiac arrest following myocardial infarction. Following resuscitation from VF, decreased cardiac contractile function is a common problem. During and following myocardial ischemia, decreased glucose oxidation, increased anaerobic glycolysis for cardiac energy production are harmful and energetically expensive. The objective of the present study is to determine the effects of dichloroacetate (DCA), a glucose oxidation stimulator, on cardiac contractile dysfunction following ischemia-induced VF...
November 2015: American Journal of Physiology. Heart and Circulatory Physiology
https://www.readbyqxmd.com/read/26073129/mitochondrial-free-fatty-acid-%C3%AE-oxidation-supports-oxidative-phosphorylation-and-proliferation-in-cancer-cells
#10
Sara Rodríguez-Enríquez, Luz Hernández-Esquivel, Alvaro Marín-Hernández, Mohammed El Hafidi, Juan Carlos Gallardo-Pérez, Ileana Hernández-Reséndiz, José S Rodríguez-Zavala, Silvia C Pacheco-Velázquez, Rafael Moreno-Sánchez
Oxidative phosphorylation (OxPhos) is functional and sustains tumor proliferation in several cancer cell types. To establish whether mitochondrial β-oxidation of free fatty acids (FFAs) contributes to cancer OxPhos functioning, its protein contents and enzyme activities, as well as respiratory rates and electrical membrane potential (ΔΨm) driven by FFA oxidation were assessed in rat AS-30D hepatoma and liver (RLM) mitochondria. Higher protein contents (1.4-3 times) of β-oxidation (CPT1, SCAD) as well as proteins and enzyme activities (1...
August 2015: International Journal of Biochemistry & Cell Biology
https://www.readbyqxmd.com/read/25996919/lactate-up-regulates-the-expression-of-lactate-oxidation-complex-related-genes-in-left-ventricular-cardiac-tissue-of-rats
#11
Daniele Gabriel-Costa, Telma Fatima da Cunha, Luiz Roberto Grassmann Bechara, Rodrigo Soares Fortunato, Luiz Henrique Marchesi Bozi, Marcele de Almeida Coelho, Maria Luiza Barreto-Chaves, Patricia Chakur Brum
BACKGROUND: Besides its role as a fuel source in intermediary metabolism, lactate has been considered a signaling molecule modulating lactate-sensitive genes involved in the regulation of skeletal muscle metabolism. Even though the flux of lactate is significantly high in the heart, its role on regulation of cardiac genes regulating lactate oxidation has not been clarified yet. We tested the hypothesis that lactate would increase cardiac levels of reactive oxygen species and up-regulate the expression of genes related to lactate oxidation complex...
2015: PloS One
https://www.readbyqxmd.com/read/25544754/dichloroacetate-a-selective-mitochondria-targeting-drug-for-oral-squamous-cell-carcinoma-a-metabolic-perspective-of-treatment
#12
Vitalba Ruggieri, Francesca Agriesti, Rosella Scrima, Ilaria Laurenzana, Donatella Perrone, Tiziana Tataranni, Carmela Mazzoccoli, Lorenzo Lo Muzio, Nazzareno Capitanio, Claudia Piccoli
Reprogramming of metabolism is a well-established property of cancer cells that is receiving growing attention as potential therapeutic target. Oral squamous cell carcinomas (OSCC) are aggressive and drugs-resistant human tumours displaying wide metabolic heterogeneity depending on their malignant genotype and stage of development. Dichloroacetate (DCA) is a specific inhibitor of the PDH-regulator PDK proved to foster mitochondrial oxidation of pyruvate. In this study we tested comparatively the effects of DCA on three different OSCC-derived cell lines, HSC-2, HSC-3, PE15...
January 20, 2015: Oncotarget
https://www.readbyqxmd.com/read/25541281/selective-dendritic-susceptibility-to-bioenergetic-excitotoxic-and-redox-perturbations-in-cortical-neurons
#13
Philip Hasel, Sean Mckay, Jing Qiu, Giles E Hardingham
Neurodegenerative and neurological disorders are often characterised by pathological changes to dendrites, in advance of neuronal death. Oxidative stress, energy deficits and excitotoxicity are implicated in many such disorders, suggesting a potential vulnerability of dendrites to these situations. Here we have studied dendritic vs. somatic responses of primary cortical neurons to these types of challenges in real-time. Using a genetically encoded indicator of intracellular redox potential (Grx1-roGFP2) we found that, compared to the soma, dendritic regions exhibited more dramatic fluctuations in redox potential in response to sub-lethal ROS exposure, and existed in a basally more oxidised state...
September 2015: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/25517164/a-ph-dependent-kinetic-model-of-dihydrolipoamide-dehydrogenase-from-multiple-organisms
#14
Michael A Moxley, Daniel A Beard, Jason N Bazil
Dihydrolipoamide dehydrogenase is a flavoenzyme that reversibly catalyzes the oxidation of reduced lipoyl substrates with the reduction of NAD(+) to NADH. In vivo, the dihydrolipoamide dehydrogenase component (E3) is associated with the pyruvate, α-ketoglutarate, and glycine dehydrogenase complexes. The pyruvate dehydrogenase (PDH) complex connects the glycolytic flux to the tricarboxylic acid cycle and is central to the regulation of primary metabolism. Regulation of PDH via regulation of the E3 component by the NAD(+)/NADH ratio represents one of the important physiological control mechanisms of PDH activity...
December 16, 2014: Biophysical Journal
https://www.readbyqxmd.com/read/25303731/an-nad-synthetic-reaction-bypasses-the-lipoate-requirement-for-aerobic-growth-of-escherichia-coli-strains-blocked-in-succinate-catabolism
#15
Fatemah A Hermes, John E Cronan
The lipoate coenzyme is essential for function of the pyruvate (PDH) and 2-oxoglutarate (OGDH) dehydrogenases and thus for aerobic growth of Escherichia coli. LipB catalyzes the first step in lipoate synthesis, transfer of an octanoyl moiety from the fatty acid synthetic intermediate, octanoyl-ACP, to PDH and OGDH. E. coli also encodes LplA, a ligase that in presence of exogenous octanoate (or lipoate) can bypass loss of LipB. LplA imparts ΔlipB strains with a 'leaky' growth phenotype on aerobic glucose minimal medium supplemented with succinate (which bypasses the OGDH-catalyzed reaction), because it scavenges an endogenous octanoate pool to activate PDH...
October 10, 2014: Molecular Microbiology
https://www.readbyqxmd.com/read/24515115/the-2-oxoacid-dehydrogenase-complexes-in-mitochondria-can-produce-superoxide-hydrogen-peroxide-at-much-higher-rates-than-complex-i
#16
Casey L Quinlan, Renata L S Goncalves, Martin Hey-Mogensen, Nagendra Yadava, Victoria I Bunik, Martin D Brand
Several flavin-dependent enzymes of the mitochondrial matrix utilize NAD(+) or NADH at about the same operating redox potential as the NADH/NAD(+) pool and comprise the NADH/NAD(+) isopotential enzyme group. Complex I (specifically the flavin, site IF) is often regarded as the major source of matrix superoxide/H2O2 production at this redox potential. However, the 2-oxoglutarate dehydrogenase (OGDH), branched-chain 2-oxoacid dehydrogenase (BCKDH), and pyruvate dehydrogenase (PDH) complexes are also capable of considerable superoxide/H2O2 production...
March 21, 2014: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/24413603/achromobacter-denitrificans-strain-yd35-pyruvate-dehydrogenase-controls-nadh-production-to-allow-tolerance-to-extremely-high-nitrite-levels
#17
Yuki Doi, Motoyuki Shimizu, Tomoya Fujita, Akira Nakamura, Noboru Takizawa, Naoki Takaya
We identified the extremely nitrite-tolerant bacterium Achromobacter denitrificans YD35 that can grow in complex medium containing 100 mM nitrite (NO2(-)) under aerobic conditions. Nitrite induced global proteomic changes and upregulated tricarboxylate (TCA) cycle enzymes as well as antioxidant proteins in YD35. Transposon mutagenesis generated NO2(-)-hypersensitive mutants of YD35 that had mutations at genes for aconitate hydratase and α-ketoglutarate dehydrogenase in the TCA cycle and a pyruvate dehydrogenase (Pdh) E1 component, indicating the importance of TCA cycle metabolism to NO2(-) tolerance...
March 2014: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/24214948/simultaneous-involvement-of-a-tungsten-containing-aldehyde-ferredoxin-oxidoreductase-and-a-phenylacetaldehyde-dehydrogenase-in-anaerobic-phenylalanine-metabolism
#18
Carlotta Debnar-Daumler, Andreas Seubert, Georg Schmitt, Johann Heider
Anaerobic phenylalanine metabolism in the denitrifying betaproteobacterium Aromatoleum aromaticum is initiated by conversion of phenylalanine to phenylacetate, which is further metabolized via benzoyl-coenzyme A (CoA). The formation of phenylacetate is catalyzed by phenylalanine transaminase, phenylpyruvate decarboxylase, and a phenylacetaldehyde-oxidizing enzyme. The presence of these enzymes was detected in extracts of cells grown with phenylalanine and nitrate. We found that two distinct enzymes are involved in the oxidation of phenylacetaldehyde to phenylacetate, an aldehyde:ferredoxin oxidoreductase (AOR) and a phenylacetaldehyde dehydrogenase (PDH)...
January 2014: Journal of Bacteriology
https://www.readbyqxmd.com/read/24055790/model-driven-rebalancing-of-the-intracellular-redox-state-for-optimization-of-a-heterologous-n-butanol-pathway-in-escherichia-coli
#19
Jae Hyung Lim, Sang Woo Seo, Se Yeon Kim, Gyoo Yeol Jung
The intracellular redox state plays an important role in the cellular physiology that determines the efficiency of chemical and biofuel production by microbial cell factories. However, it is difficult to achieve optimal redox rebalancing of synthetic pathways owing to the sensitive responses of cellular physiology according as the intracellular redox state changes. Here, we demonstrate optimal rebalancing of the intracellular redox state by model-driven control of expression using n-butanol production in Escherichia coli as a model system...
November 2013: Metabolic Engineering
https://www.readbyqxmd.com/read/23835326/sirt3-regulates-metabolic-flexibility-of-skeletal-muscle-through-reversible-enzymatic-deacetylation
#20
Enxuan Jing, Brian T O'Neill, Matthew J Rardin, André Kleinridders, Olga R Ilkeyeva, Siegfried Ussar, James R Bain, Kevin Y Lee, Eric M Verdin, Christopher B Newgard, Bradford W Gibson, C Ronald Kahn
Sirt3 is an NAD(+)-dependent deacetylase that regulates mitochondrial function by targeting metabolic enzymes and proteins. In fasting mice, Sirt3 expression is decreased in skeletal muscle resulting in increased mitochondrial protein acetylation. Deletion of Sirt3 led to impaired glucose oxidation in muscle, which was associated with decreased pyruvate dehydrogenase (PDH) activity, accumulation of pyruvate and lactate metabolites, and an inability of insulin to suppress fatty acid oxidation. Antibody-based acetyl-peptide enrichment and mass spectrometry of mitochondrial lysates from WT and Sirt3 KO skeletal muscle revealed that a major target of Sirt3 deacetylation is the E1α subunit of PDH (PDH E1α)...
October 2013: Diabetes
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