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https://www.readbyqxmd.com/read/28706514/evaluation-of-the-bruker-biotyper-matrix-assisted-laser-desorption-ionization-time-of-flight-mass-spectrometry-system-for-identification-of-aspergillus-species-directly-from-growth-on-solid-agar-media
#1
Ying Li, He Wang, Yu-Pei Zhao, Ying-Chun Xu, Po-Ren Hsueh
We evaluated the accuracy of the Bruker Biotyper matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) system at identifying clinical isolates of Aspergillus species that were grown on agar media. A total of 381 non-duplicate Aspergillus isolates representing 21 different Aspergillus species identified by molecular analysis were included in this study. The Bruker Biotyper MALDI-TOF MS system was able to identify 30.2% (115/381) of the isolates to the species level (score values of ≥2...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28705667/clinical-characteristics-of-bacteraemia-caused-by-burkholderia-cepacia-complex-species-and-antimicrobial-susceptibility-of-the-isolates-in-a-medical-centre-in-taiwan
#2
Ying-Chun Chien, Chun-Hsing Liao, Wang-Huei Sheng, Jung-Yien Chien, Yu-Tsung Huang, Chong-Jen Yu, Po-Ren Hsueh
This study investigated the clinical characteristics and outcomes of bacteraemia due to Burkholderia cepacia complex (BCC) species among 54 patients without cystic fibrosis from January 2013 to February 2015. BCC isolates were identified to the species level by the Bruker Biotyper MALDI-TOF MS system and by sequencing analysis of the 16S rRNA and recA genes. Antimicrobial susceptibilities of the isolates were determined by the agar dilution method. Sequencing of the recA gene in the 54 blood isolates revealed 37 (68...
July 10, 2017: International Journal of Antimicrobial Agents
https://www.readbyqxmd.com/read/28703318/ft-artifacts-and-power-function-resolution-filter-in-fourier-transform-mass-spectrometry
#3
Basem Kanawati, Theresa Bader, Karl-Peter Wanczek, Yan Li, Philippe Schmitt-Kopplin
RATIONALE: Peak picking algorithms in mass spectrometry face the challenge of picking the correct signals from a mass spectrum. In some cases signal wiggles (side lobes) are also chosen in the produced mass list as if they were real signals. Constraints which are defined in such algorithms do not always guarantee wiggle free accurate mass list generation out of raw mass spectra. This problem intensifies with acquisitions, which are accompanied with longer transients. Thus, the problem represents a contemporary issue, which propagates with modern high memory digitizers and exists in both MS and MS/MS spectra...
July 13, 2017: Rapid Communications in Mass Spectrometry: RCM
https://www.readbyqxmd.com/read/28691248/adolescent-alcohol-exposure-decreases-frontostriatal-resting-state-functional-connectivity-in-adulthood
#4
Margaret A Broadwater, Sung-Ho Lee, Yang Yu, Hongtu Zhu, Fulton T Crews, Donita L Robinson, Yen-Yu Ian Shih
Connectivity of the prefrontal cortex (PFC) matures through adolescence, coinciding with emergence of adult executive function and top-down inhibitory control over behavior. Alcohol exposure during this critical period of brain maturation may affect development of PFC and frontolimbic connectivity. Adult rats exposed to adolescent intermittent ethanol (AIE; 5 g/kg ethanol, 25 percent v/v in water, intragastrically, 2-day-on, 2-day-off, postnatal day 25-54) or water control underwent resting-state functional MRI to test the hypothesis that AIE induces persistent changes in frontolimbic functional connectivity under baseline and acute alcohol conditions (2 g/kg ethanol or saline, intraperitoneally administered during scanning)...
July 9, 2017: Addiction Biology
https://www.readbyqxmd.com/read/28674064/oxa-244-producing-escherichia-coli-isolates-a-challenge-for-clinical-microbiology-laboratories
#5
Yannick Hoyos-Mallecot, Thierry Naas, Rémy A Bonnin, Rafael Patino, Philippe Glaser, Nicolas Fortineau, Laurent Dortet
OXA-244 is a single point mutant derivative of OXA-48 displaying reduced carbapenemase activity. Here, we report microbiological features of 7 OXA-244-producing E. coli isolates. Only one isolate grew on the ChromID® CARBA SMART medium (bioMérieux), but 6/7 grew on ChromID® ESBL medium (bioMérieux), as they co-produced either an extended spectrum β-lactamase and or a plasmid-encoded cephalosporinase. The production of a carbapenemase was detected in 57.1%, 71.4%, 71.4%, and 100% of the E. coli isolates using the Carba NP test, the RAPIDEC® CARBA NP (bioMérieux), a MALDI-TOF MS hydrolysis assay (Bruker), and OXA-48 K-SeT® (Coris bioconcept), respectively...
July 3, 2017: Antimicrobial Agents and Chemotherapy
https://www.readbyqxmd.com/read/28656386/performance-of-microbial-identification-by-maldi-tof-ms-and-susceptibility-testing-by-vitek-2-from-positive-blood-cultures-after-minimal-incubation-on-solid-media
#6
S L Mitchell, K Alby
Bloodstream infections (BSIs) are a leading cause of patient morbidity and mortality. Rapid identification of organisms from BSIs is critical for initiating targeted antimicrobial therapy. Although many methods exist for rapid identification, they do not provide detailed or definitive susceptibility information. We assessed the utility of both the VITEK MS and Bruker Biotyper MALDI-TOF mass spectrometers to identify organisms from a positive blood culture bottle after only 4 h of growth on solid media compared to identification from overnight growth using the VITEK MS...
June 28, 2017: European Journal of Clinical Microbiology & Infectious Diseases
https://www.readbyqxmd.com/read/28649705/naoh-hcl-neutralized-urine-preparation-for-direct-testing-of-uropathogens-by-bruker-ms
#7
Ji Seon Choi, Jayoung Kim, Han-Soo Kim, Chang-Wan Kwon, Min-Sung Kim, Seong-Hyeok Choi
BACKGROUND: We evaluated the analytical performance of a NaOH-HCl neutralization protocol for identifying uropathogens directly from urine samples by a Bruker MS system (Bruker Daltonics, German) and sought to establish a protocol for integrating the method with conventional screening. METHODS: Among all urine samples requested for Gram staining, UF-1000i, and urine cultures by physicians, we selected samples that were positive by both Gram staining and UF-1000i testing...
June 26, 2017: Journal of Clinical Laboratory Analysis
https://www.readbyqxmd.com/read/28643493/identification-of-viridans-streptococci-with-matrix-assisted-laser-desorption-ionization-time-of-flight-mass-spectrometry-by-an-in-house-method-and-a-commercially-available-system
#8
Catalina Suzana Stingu, Klaus Eschrich, Juliane Thiel, Toralf Borgmann, Reiner Schaumann, Arne C Rodloff
Two matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS)-based methods were compared for their ability to identify viridans streptococci. One approach employed a reference database and software developed in-house. All inhouse measurements were performed using an Autoflex II Instrument (Bruker Daltonics GmbH, Germany). The other system, a VITEK-MS (BioMérieux, France) was operated on the commercially available V2.0 Knowledge Base for Clinical Use database. Clinical isolates of viridans streptococci (n=184) were examined...
September 2017: Annals of Laboratory Medicine
https://www.readbyqxmd.com/read/28637912/parallel-evaluation-of-the-maldi-sepsityper-and-verigene-bc-gn-assays-for-rapid-identification-of-gram-negative-bacilli-from-positive-blood-cultures
#9
Miguel A Arroyo, Gerald A Denys
Rapid identification of microorganisms from positive blood cultures has improved clinical management and antimicrobial stewardship. The advent of the matrix-assisted laser desorption time-of-flight Mass Spectrometry (MALDI-TOF MS) has reduced the time to identification of cultured isolates and is now often the definitive method used in the clinical microbiology laboratory. The commercial in vitro diagnostic MALDI Sepsityper (Sepsityper) kit has the potential for standardization and clinical routine use for the rapid identification of a broad range of bacteria from positive blood cultures...
June 21, 2017: Journal of Clinical Microbiology
https://www.readbyqxmd.com/read/28637909/rapid-differentiation-of-haemophilus-influenzae-and-haemophilus-haemolyticus-using-maldi-tof-mass-spectrometry-with-clinprotools-mass-spectra-analysis
#10
Jonathan H K Chen, Vincent C C Cheng, Chun-Pong Wong, Sally C Y Wong, Wing-Cheong Yam, Kwok-Yung Yuen
Haemophilus influenzae is associated with severe invasive disease, while Haemophilus haemolyticus is considered part of the commensal flora in the human respiratory tract. Although the addition of a custom mass spectra library into the matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) system could improve identification of these two species, the establishment of such a custom database is technically complicated and requires a large amount of resources, which most clinical laboratories cannot afford...
June 21, 2017: Journal of Clinical Microbiology
https://www.readbyqxmd.com/read/28637907/online-identification-of-fungi-using-maldi-tof-mass-spectrometry-validation-of-a-new-web-application
#11
A C Normand, P Becker, F Gabriel, C Cassagne, I Accoceberry, M Gari-Toussaint, L Hasseine, D De Geyter, D Pierard, I Surmont, F Djenad, J L Donnadieu, M Piarroux, S Ranque, M Hendrickx, R Piarroux
MALDI-TOF mass spectrometry has emerged as a reliable technique to identify molds involved in human diseases, including dermatophytes, provided that exhaustive reference databases are available. This study assessed an online identification application based on original algorithms and an extensive in-house reference database comprising 11,851 spectra (938 fungal species and 246 fungal genera).Validation criteria were established using an initial panel of 422 molds, including dermatophytes, previously identified via DNA sequencing (126 species)...
June 21, 2017: Journal of Clinical Microbiology
https://www.readbyqxmd.com/read/28623484/identification-of-mycobacterium-species-by-maldi-tof-mass-spectrometry
#12
M Neuschlova, M Vladarova, J Kompanikova, V Sadlonova, E Novakova
Matrix-assisted laser desorption ionization - time-of-flight (MALDI-TOF) mass spectrometry enables to identify microorganisms by comparison of the protein content with reference spectra in the database. The aim of this study was to evaluate the efficacy of phenotypic identification of mycobacteria by MALDI-TOF mass spectrometry in laboratory practice. Seventy five isolates of mycobacteria were identified by molecular and phenotypic method, and the results were compared by MALDI-TOF. For MALDI-TOF, material was processed according to the Bruker Daltonics protocol and Mycobacterial Library database version 2...
June 17, 2017: Advances in Experimental Medicine and Biology
https://www.readbyqxmd.com/read/28611406/targeted-next-generation-sequencing-of-the-16s-23s-rrna-region-for-culture-independent-bacterial-identification-increased-discrimination-of-closely-related-species
#13
Artur J Sabat, Evert van Zanten, Viktoria Akkerboom, Guido Wisselink, Kees van Slochteren, Richard F de Boer, Ron Hendrix, Alexander W Friedrich, John W A Rossen, Anna M D Mirjam Kooistra-Smid
The aim of this study was to develop an easy-to-use culture-free diagnostic method based on next generation sequencing (NGS) of PCR amplification products encompassing whole 16S-23S rRNA region to improve the resolution of bacterial species identification. To determine the resolution of the new method 67 isolates were subjected to four identification methods: Sanger sequencing of the 16S rRNA gene; NGS of the 16S-23S rRNA region using MiSeq (Illumina) sequencer; Microflex MS (Bruker) and VITEK MS (bioMérieux)...
June 13, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28608323/comparison-of-two-matrix-assisted-laser-desorption-ionization-time-of-flight-mass-spectrometry-systems-for-the-identification-of-clinical-filamentous-fungi
#14
Yanfei Huang, Mingxin Zhang, Min Zhu, Mei Wang, Yufeng Sun, Haitong Gu, Jingjing Cao, Xue Li, Shaoya Zhang, Jinglin Wang, Xinxin Lu
Infections caused by filamentous fungi have become a health concern, and require rapid and accurate identification in order for effective treatment of the pathogens. To compare the performance of two MALDI-TOF MS systems (Bruker Microflex LT and Xiamen Microtyper) in the identification of filamentous fungal species. A total of 374 clinical filamentous fungal isolates sequentially collected in the Clinical Laboratory at the Beijing Tongren Hospital between January 2014 and December 2015 were identified by traditional phenotypic methods, Bruker Microflex LT and Xiamen Microtyper MALDI-TOF MS, respectively...
July 2017: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28566082/-femoral-hemodialysis-catheter-related-bacteremia-due-to-globicatella-sanguinis-challenges-in-species-identification
#15
Elif Aktaş, Nafia Canan Gürsoy, Tamer Sakacı, Yener Koç, Aziz Ahmad Hamidi, Emin Bulut, Duygu Erdemir, Barış Otlu
In this case, catheter-related bacteremia due to Globicatella sanguinis in a 43 years old female patient undergoing hemodialysis with the diagnosis of diabetic nephropathy was presented and the methods in the laboratory diagnosis of the rare opportunistic pathogen, Globicatella cins, were nvestigated. A set of peripheral blood cultures and simultaneous catheter culture was obtained from the patient in third of May 2016. Biochemical tests, Phoenix (Becton Dickinson, USA) and MicroScan (Beckman Coulter, USA) automated systems and matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF MS) based Microflex MS (Bruker, Daltonics, Germany) and VITEK MS (database v2...
April 2017: Mikrobiyoloji Bülteni
https://www.readbyqxmd.com/read/28559162/identification-of-cronobacter-species-by-matrix-assisted-laser-desorption-ionization-time-of-flight-mass-spectrometry-with-an-optimized-analysis-method
#16
Qi Wang, Xiao-Juan Zhao, Zi-Wei Wang, Li Liu, Yong-Xin Wei, Xiao Han, Jing Zeng, Wan-Jin Liao
Rapid and precise identification of Cronobacter species is important for foodborne pathogen detection, however, commercial biochemical methods can only identify Cronobacter strains to genus level in most cases. To evaluate the power of mass spectrometry based on matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF MS) for Cronobacter species identification, 51 Cronobacter strains (eight reference and 43 wild strains) were identified by both MALDI-TOF MS and 16S rRNA gene sequencing. Biotyper RTC provided by Bruker identified all eight reference and 43 wild strains as Cronobacter species, which demonstrated the power of MALDI-TOF MS to identify Cronobacter strains to genus level...
May 27, 2017: Journal of Microbiological Methods
https://www.readbyqxmd.com/read/28542393/head-to-head-comparison-of-microflex-lt-and-vitek-ms-systems-for-routine-identification-of-microorganisms-by-maldi-tof-mass-spectrometry-in-chile
#17
Lorena Porte, Patricia García, Stephanie Braun, María Teresa Ulloa, Mónica Lafourcade, Alisson Montaña, Carolina Miranda, Gerardo Acosta-Jamett, Thomas Weitzel
BACKGROUND: Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry (MS) is a new and revolutionary identification method for microorganisms and has recently been introduced into clinical microbiology in many industrialized countries in Europe and North America. OBJECTIVES: Our study aimed to compare the performance and practicality of two commercial MALDI-TOF MS platforms in a head-to head manner at a routine laboratory in Chile...
2017: PloS One
https://www.readbyqxmd.com/read/28514339/-increased-oral-fluid-remineraling-function-by-endogenous-and-exogenous-saturation-methods-of-its-mineral-complexes
#18
O G Avraamova, Yu A Ippolitov, Ya A Plotnikova, P V Seredin, D V Goloshapov, E O Aloshina
RELEVANCE: One of the most common problems in modern caries prevention is the development of techniques to increase tooth resistance to the effects of cariogenic factors. Therefore, research is needed to study the chemical composition of tissues like teeth and body fluids surrounding the tooth to prevent demineralization process. The purpose of determining the effectiveness of work- and correlation relationship between endo saturation exogenous methods oral liquid mineral complexes. MATERIAL AND METHODS: In 95 patients analyzed the chemical composition and structure of the oral fluid by IR spectroscopy...
2017: Stomatologii︠a︡
https://www.readbyqxmd.com/read/28505220/multicenter-evaluation-of-the-bruker-maldi-biotyper-ca-system-for-the-identification-of-clinically-important-bacteria-and-yeasts
#19
Deborah A Wilson, Stephen Young, Karen Timm, Susan Novak-Weekley, Elizabeth M Marlowe, Neil Madisen, Jennifer L Lillie, Nathan A Ledeboer, Rebecca Smith, Josh Hyke, Christen Griego-Fullbright, Patricia Jim, Paul A Granato, Matthew L Faron, Joven Cumpio, Blake W Buchan, Gary W Procop
Objectives: A report on the multicenter evaluation of the Bruker MALDI Biotyper CA System (MBT-CA; Bruker Daltonics, Billerica, MA) for the identification of clinically important bacteria and yeasts. Methods: In total, 4,399 isolates of medically important bacteria and yeasts were assessed in the MBT-CA. These included 2,262 aerobic gram-positive (AGP) bacteria, 792 aerobic gram-negative (AGN) bacteria 530 anaerobic (AnA) bacteria, and 815 yeasts (YSTs). Three processing methods were assesed...
June 1, 2017: American Journal of Clinical Pathology
https://www.readbyqxmd.com/read/28500917/using-rapid-scan-epr-to-improve-the-detection-limit-of-quantitative-epr-by-more-than-one-order-of-magnitude
#20
J Möser, K Lips, M Tseytlin, G R Eaton, S S Eaton, A Schnegg
X-band rapid-scan EPR was implemented on a commercially available Bruker ELEXSYS E580 spectrometer. Room temperature rapid-scan and continuous-wave EPR spectra were recorded for amorphous silicon powder samples. By comparing the resulting signal intensities the feasibility of performing quantitative rapid-scan EPR is demonstrated. For different hydrogenated amorphous silicon samples, rapid-scan EPR results in signal-to-noise improvements by factors between 10 and 50. Rapid-scan EPR is thus capable of improving the detection limit of quantitative EPR by at least one order of magnitude...
April 17, 2017: Journal of Magnetic Resonance
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