keyword
https://read.qxmd.com/read/38033342/high-throughput-sequencing-reveals-hub-genes-for-human-early-embryonic-development-arrest-in-vitro-fertilization-a-pilot-study
#21
JOURNAL ARTICLE
Wuwen Zhang, Kai Li, Shifeng Li, Rong Lv, Jie Ma, Ping Yin, Li Li, Ningyu Sun, Yuanyuan Chen, Lu Lu, Yun Li, Qinhua Zhang, Hua Yan
Many clinical studies have shown that embryos of in vitro fertilization (IVF) are often prone to developmental arrest, which leads to recurrent failure of IVF treatment. Early embryonic arrest has always been an urgent clinical problem in assisted reproduction centers. However, the molecular mechanisms underlying early embryonic development arrest remain largely unknown. The objective of this study is to investigate potential candidate hub genes and key signaling pathways involved in early stages of embryonic development...
2023: Frontiers in Physiology
https://read.qxmd.com/read/38009019/ube2c-promotes-malignancy-of-cutaneous-squamous-cell-carcinoma
#22
JOURNAL ARTICLE
Ruiting Luo, Ruimin Bai, Jiaqi Guo, Ningyi Xian, Yan Zheng
BACKGROUND: Our study aimed to study the involvement of ubiquitin-conjugating enzyme E2C (UBE2C) in cutaneous squamous cell carcinoma (cSCC). As the second most common malignancy with a rising incidence, understanding the molecular mechanisms driving cSCC is crucial for improved diagnosis and treatment. METHODS: We combined multiple datasets of cSCC in Gene Expression Omnibus (GEO) repository to investigate its expression and diagnostic value. We collected patient specimens and performed immunohistochemistry to examine its expression in patients and its correlation with tumor histological grade...
November 2023: Skin Research and Technology
https://read.qxmd.com/read/37963584/exploring-the-mechanism-underlying-the-therapeutic-effects-of-butein-in-colorectal-cancer-using-network-pharmacology-and-single-cell-rna-sequencing-data
#23
JOURNAL ARTICLE
Ye Lu, Li Shan, Xu Cheng, Xiao-Li Zhu
BACKGROUND: Butein has shown substantial potential as a cancer treatment, but its precise mechanism of action in colorectal cancer (CRC) remains unclear. This study aimed to uncover the underlying mechanisms through which butein operates in CRC and to identify potential biomarkers through a comprehensive investigation. METHODS: Target genes associated with butein were sourced from SwissTargetPrediction, CTD, BindingDB and TargetNet. Gene expression data from the GSE38026 dataset and the single-cell dataset (GSE222300) were retrieved from the Gene Expression Omnibus database...
November 14, 2023: Journal of Gene Medicine
https://read.qxmd.com/read/37958776/role-of-ube2c-in-brain-cancer-invasion-and-dissemination
#24
REVIEW
Stefani Domentean, Eunice Paisana, Rita Cascão, Claudia C Faria
Glioblastoma (GB) and brain metastases (BM) are the most common brain tumors in adults and are invariably associated with a dismal outcome. These highly malignant tumors share common features including increased invasion and migration of the primary or metastatic brain cancer cells, whose triggering mechanisms are largely unknown. Emerging evidence has suggested that the ubiquitin-conjugating enzyme E2C (UBE2C), essential for controlling cell cycle progression, is overexpressed in diverse malignancies, including brain cancer...
October 31, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37958642/combined-inhibition-of-ube2c-and-plk1-reduce-cell-proliferation-and-arrest-cell-cycle-by-affecting-acly-in-pan-cancer
#25
JOURNAL ARTICLE
Keying Liang, Qian Wang, Li Qiu, Xiaocheng Gong, Zixi Chen, Haibo Zhang, Ke Ding, Yunfei Liu, Jinfen Wei, Shudai Lin, Shuying Fu, Hongli Du
Various studies have shown that the cell-cycle-related regulatory proteins UBE2C, PLK1, and BIRC5 promote cell proliferation and migration in different types of cancer. However, there is a lack of in-depth and systematic research on the mechanism of these three as therapeutic targets. In this study, we found a positive correlation between the expression of UBE2C and PLK1 / BIRC5 in the Cancer Genome Atlas (TCGA) database, revealing a potential combination therapy candidate for pan-cancer. Quantitative real-time PCR (qRT-PCR), Western blotting (WB), cell phenotype detection, and RNA-seq techniques were used to evidence the effectiveness of the combination candidate...
October 27, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37904456/rrp9-and-ddx21-as-new-biomarkers-of-colorectal-cancer
#26
JOURNAL ARTICLE
Xiaoqian Chi, Ning Yang, Yabin Liu
Colorectal cancer originates from the epithelium of the large intestine and is a common malignant tumor in the gastrointestinal tract. However, the relationship between RRP9 and DDX21 and colorectal cancer (CRC) remains unclear. GSE134834, GSE206800, and GSE209892 profiles for CRC were downloaded from the gene expression omnibus database generated using GPL20115 and GPL23126. Differentially expressed genes (DEGs) were screened and weighted gene co-expression network analysis was performed. The construction and analysis of protein-protein interaction network...
October 27, 2023: Medicine (Baltimore)
https://read.qxmd.com/read/37893423/robust-identification-of-differential-gene-expression-patterns-from-multiple-transcriptomics-datasets-for-early-diagnosis-prognosis-and-therapies-for-breast-cancer
#27
JOURNAL ARTICLE
Khanis Farhana Tuly, Md Bayazid Hossen, Md Ariful Islam, Md Kaderi Kibria, Md Shahin Alam, Md Harun-Or-Roshid, Anjuman Ara Begum, Md Sohel Hasan, Rashidul Alam Mahumud, Md Nurul Haque Mollah
Background and Objectives: Breast cancer (BC) is one of the major causes of cancer-related death in women globally. Proper identification of BC-causing hub genes (HubGs) for prognosis, diagnosis, and therapies at an earlier stage may reduce such death rates. However, most of the previous studies detected HubGs through non-robust statistical approaches that are sensitive to outlying observations. Therefore, the main objectives of this study were to explore BC-causing potential HubGs from robustness viewpoints, highlighting their early prognostic, diagnostic, and therapeutic performance...
September 24, 2023: Medicina
https://read.qxmd.com/read/37848988/identification-of-transcriptome-characteristics-of-granulosa-cells-and-the-possible-role-of-ube2c-in-the-pathogenesis-of-premature-ovarian-insufficiency
#28
JOURNAL ARTICLE
Dan Liu, Xiaohong Guan, Wenqiang Liu, Yanping Jia, Hong Zhou, Chenxiang Xi, Mei Zhao, Yuan Fang, Li Wu, Kunming Li
BACKGROUND: Premature ovarian insufficiency (POI) is an important cause of infertility characterized by the functional decline of the ovary. Granulosa cells (GCs) around oocytes are critical for folliculogenesis, and GC dysfunction is one of the important etiologies of POI. The aim of this study was to explore the potential biomarkers of POI by identifying hub genes and analyze the correlation of biomarkers with immune infiltration in POI using RNA profiling and bioinformatics analysis...
October 17, 2023: Journal of Ovarian Research
https://read.qxmd.com/read/37840753/activation-of-ubec2-by-transcription-factor-mybl2-affects-dna-damage-and-promotes-gastric-cancer-progression-and-cisplatin-resistance
#29
JOURNAL ARTICLE
Jiegen Long, Bin Zhu, Tao Tian, Linfei Ren, Yong Tao, Haitao Zhu, Dengwei Li, Yonghong Xu
Ubiquitin-conjugating enzyme E2 C (UBE2C) plays a carcinogenic role in gastric cancer (GC); yet, its role in cisplatin (DDP) resistance in GC is enigmatic. This study sought to probe into the impact of UBE2C on DDP resistance in GC and its concrete molecular mechanism in GC progression. Bioinformatics analysis was used to analyze differentially expressed mRNAs and predict upstream regulatory molecules in GC. Real-time quantitative reverse transcriptase polymerase chain reaction and western blot were used to detect the expression of UBE2C and MYB proto-oncogene like 2 (MYBL2)...
2023: Open Medicine (Warsaw, Poland)
https://read.qxmd.com/read/37808164/analysis-of-two-gene-signatures-and-related-drugs-in-small-cell-lung-cancer-by-bioinformatics
#30
JOURNAL ARTICLE
Yi Li, Xiwen Zhou, Zhi Lyu
Small-cell lung cancer (SCLC) has a poor prognosis and can be diagnosed with systemic metastases. Nevertheless, the molecular mechanisms underlying the development of SCLC are unclear, requiring further investigation. The current research aims to identify relevant biomarkers and available drugs to treat SCLC. The bioinformatics analysis comprised three Gene Expression Omnibus datasets (including GSE2149507, GSE6044, and GSE30219). Using the limma R package, we discovered differentially expressed genes (DEGs) in the current work...
2023: Open Medicine (Warsaw, Poland)
https://read.qxmd.com/read/37803076/ube2c-serves-as-a-prognosis-biomarker-of-uterine-corpus-endometrial-carcinoma-via-promoting-tumor-migration-and-invasion
#31
JOURNAL ARTICLE
Sijia Ma, Qian Chen, Xu Li, Jing Fu, Le Zhao
The biological functions of ubiquitin-conjugating enzymes E2 (UBE2) family members in uterine corpus endometrial carcinoma (UCEC) remains unclear. Our study aimed to systematically analyze the expression patterns, prognostic value, biological functions and molecular regulatory mechanisms of UBE2 family in UCEC. Among nine screened UBE2 family members associated with UCEC, UBE2C was the most significantly overexpressed gene with poor prognosis. High expression levels of UBE2C in UCEC was correlated with stages, histological subtypes, patient's menopause status and TP53 mutation...
October 6, 2023: Scientific Reports
https://read.qxmd.com/read/37779238/diagnosis-and-prognosis-of-thyroid-cancer-by-immune-related-genes
#32
JOURNAL ARTICLE
Jinze Li, Zhenjun Li, Ping Zhao
BACKGROUND: Thyroid carcinoma (THCA) is the most common malignant endocrine tumor with low mortality and a relatively good prognosis. Immune genes have attracted much attention as molecular markers of THCA prognosis and potential targets of immunotherapy. METHODS: Our study analyzed the transcriptome and clinical data of immune-related genes (IRGs) of THCA in gene expression omnibus, the cancer genome atlas-THCA, and ImmPort databases. By univariate Cox regression analysis, 15 genes were significantly correlated with the survival of patients with THCA...
October 2, 2023: American Journal of Clinical Oncology
https://read.qxmd.com/read/37735619/time-resolved-cryo-em-tr-em-analysis-of-substrate-polyubiquitination-by-the-ring-e3-anaphase-promoting-complex-cyclosome-apc-c
#33
JOURNAL ARTICLE
Tatyana Bodrug, Kaeli A Welsh, Derek L Bolhuis, Ethan Paulаkonis, Raquel C Martinez-Chacin, Bei Liu, Nicholas Pinkin, Thomas Bonacci, Liying Cui, Pengning Xu, Olivia Roscow, Sascha Josef Amann, Irina Grishkovskaya, Michael J Emanuele, Joseph S Harrison, Joshua P Steimel, Klaus M Hahn, Wei Zhang, Ellen D Zhong, David Haselbach, Nicholas G Brown
Substrate polyubiquitination drives a myriad of cellular processes, including the cell cycle, apoptosis and immune responses. Polyubiquitination is highly dynamic, and obtaining mechanistic insight has thus far required artificially trapped structures to stabilize specific steps along the enzymatic process. So far, how any ubiquitin ligase builds a proteasomal degradation signal, which is canonically regarded as four or more ubiquitins, remains unclear. Here we present time-resolved cryogenic electron microscopy studies of the 1...
September 21, 2023: Nature Structural & Molecular Biology
https://read.qxmd.com/read/37715381/identification-of-pivotal-genes-with-prognostic-evaluation-value-in-lung-adenocarcinoma-by-bioinformatics-analysis
#34
JOURNAL ARTICLE
Yushan Wang, Ruihong Wang, Ji Ma, Tingting Wang, Cuiping Ma, Yuchao Gu, Yanxia Xu, Ye Wang
Lung cancer remains the leading cause of cancer morbidity and mortality worldwide, and over-diagnosis causes various unnecessary losses in patients' lives and health. How to more effectively screen lung cancer patients and their potential prognostic risk become the focus of our current study. By analyzing the LUAD expression profile in The Cancer Genome Atlas (TCGA), we constructed a weighted gene co-expression network using differentially expressed genes (DEGs) to find the key modules and pivotal genes. A COX proportional risk regression model based on the least absolute shrinkage and selection operator (LASSO) was used to assess the predictive value of the model for the prognosis of LUAD patients...
August 31, 2023: Cellular and Molecular Biology
https://read.qxmd.com/read/37641028/identification-of-novel-tumor-associated-antigens-and-evaluation-of-a-panel-of-autoantibodies-in-detecting-oral-cancer
#35
JOURNAL ARTICLE
Weihong Xie, Guiying Sun, Junfen Xia, Huili Chen, Chen Wang, Juan Lin, Peng Wang
BACKGROUND: We aimed to identify tumor-associated antigen (TAA) biomarkers through bioinformatic analysis and experimental verification, and to evaluate a panel of autoantibodies against tumor-associated antigens (TAAbs) for the detection of oral cancer (OC). METHODS: GEO and TCGA databases were used to screen significantly up-regulated genes related to OC, and protein-protein interaction (PPI) analysis and Cystoscope software were used to identify key genes. Enzyme-linked immunosorbent assay (ELISA) was used to detect the expression levels of autoantibodies in 173 OC patients and 173 normal controls, and binary logistic regression analysis was used to build a diagnostic model...
August 28, 2023: BMC Cancer
https://read.qxmd.com/read/37583848/identification-of-functional-genes-regulating-gastric-cancer-progression-using-integrated-bioinformatics-analysis
#36
JOURNAL ARTICLE
Kun Yu, Dong Zhang, Qiang Yao, Xing Pan, Gang Wang, Hai-Yang Qian, Yao Xiao, Qiong Chen, Ke Mei
BACKGROUND: Gastric cancer (GC) is one of the most common cancers and has a poor prognosis. Treatment of GC has remained unchanged over the past few years. AIM: To investigate the potential therapeutic targets and related regulatory biomarkers of GC. METHODS: We obtained the public GC transcriptome sequencing dataset from the Gene Expression Omnibus database. The datasets contained 348 GC tissues and 141 healthy tissues. In total, 251 differentially expressed genes (DEGs) were identified, including 187 down-regulated genes and 64 up-regulated genes...
July 26, 2023: World Journal of Clinical Cases
https://read.qxmd.com/read/37583423/bioinformatics-based-screening-of-key-genes-for-transformation-of-tyrosine-kinase-inhibitor-resistant-lung-adenocarcinoma-to-small-cell-lung-cancer
#37
JOURNAL ARTICLE
Ying Zhang, Qiang Chen, Ting Huang, Di Zhu, Yuanzhi Lu
PURPOSE: Lung adenocarcinoma (LUAD) is a common type of lung cancer. Cancer in a small number of patients with EGFR mutations will transform from LUAD to small cell lung cancer (SCLC) during epidermal growth factor receptor tyrosine kinase inhibitor (EGFR-TKI) therapiesr. The purpose of the present study was to identify the core genes related to the transformation of LUAD into SCLC and to explore the associated molecular mechanisms. METHODS: GSE29016, GSE1037, GSE6044 and GSE40275 mRNA microarray datasets from Gene Expression Omnibus (GEO) were analyzed to obtain differentially expressed genes (DEGs) between LUAD and SCLC tissues, and the results were used for network analysis of protein-protein interactions (PPIs)...
2023: Frontiers in Medicine
https://read.qxmd.com/read/37580802/comprehensive-analysis-of-ube2c-expression-and-its-potential-roles-and-mechanisms-in-hepatocellular-carcinoma
#38
JOURNAL ARTICLE
Xiao Li, Zhaosheng Ma, Linhang Mei
Hepatocellular carcinoma (HCC) ranks one of the most common and lethal cancers all over the world. Previous studies suggest that ubiquitin-conjugating enzyme E2C (UBE2C) serves as an oncogene in human cancers. However, its expression, diagnosis, prognosis and potential mechanisms in HCC remain largely unknown. In this study, the expression of UBE2C in HCC was first analyzed by comprehensive bioinformatic analysis. ROC curve analysis and survival analysis were employed to assess the diagnostic and prognostic roles of UBE2C in HCC...
August 14, 2023: Aging
https://read.qxmd.com/read/37538397/identification-and-characterization-of-putative-biomarkers-and-therapeutic-axis-in-glioblastoma-multiforme-microenvironment
#39
JOURNAL ARTICLE
Smita Kumari, Pravir Kumar
Non-cellular secretory components, including chemokines, cytokines, and growth factors in the tumor microenvironment, are often dysregulated, impacting tumorigenesis in Glioblastoma multiforme (GBM) microenvironment, where the prognostic significance of the current treatment remains unsatisfactory. Recent studies have demonstrated the potential of post-translational modifications (PTM) and their respective enzymes, such as acetylation and ubiquitination in GBM etiology through modulating signaling events. However, the relationship between non-cellular secretory components and post-translational modifications will create a research void in GBM therapeutics...
2023: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/37535572/system-analysis-identifies-ube2c-as-a-novel-oncogene-target-for-adrenocortical-carcinoma
#40
JOURNAL ARTICLE
Renlun Huang, Lang Guo, Chiwei Chen, Yuyang Xiang, Guohao Li, Jieyan Zheng, Yanping Wu, Xiu Yuan, Jianfu Zhou, Wenxi Gao, Songtao Xiang
Ubiquitin Conjugating Enzyme 2C (UBE2C) is an emerging target gene for tumor progression. However, the tumorigenic effect and mechanism of UBE2C in adrenocortical carcinoma (ACC) remains unclear. Systematic investigation of the tumorigenic effect of UBE2C may help in understanding its prognostic value in adrenocortical carcinoma. First, we exploited the intersection on DFS-related genes, OS-related genes, highly expressed genes in adrenocortical carcinoma as well as differentially expressed genes (DEGs) between tumor and normal, and then obtained 20 candidate genes...
2023: PloS One
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