keyword
https://read.qxmd.com/read/38704639/a-role-for-conformational-changes-in-enzyme-catalysis
#1
JOURNAL ARTICLE
Olivier Rivoire
The role played by conformational changes in enzyme catalysis is controversial. In addition to examining specific enzymes, studying formal models can help identify the conditions under which conformational changes promote catalysis. Here, we present a model demonstrating how conformational changes can break a generic trade-off due to the conflicting requirements of successive steps in catalytic cycles, namely high specificity for the transition state to accelerate the chemical transformation and low affinity for the products to favor their release...
May 3, 2024: Biophysical Journal
https://read.qxmd.com/read/38703963/bio-promoter-mediated-denitrification-recovery-from-cd-ii-stress-microbial-activity-resilience-electron-behavior-enhancement-and-microbial-community-evolution
#2
JOURNAL ARTICLE
Yingxin Zhao, Jinshuang Zhang, Zhihui Chen, Qian Wang
Denitrification is fragile to toxic substances, while currently there are few regulation strategies for toxic substance-stressed denitrification. This study proposed a combined bio-promoter composed of basic bio-promoter (cytokinin, biotin, L-cysteine, and flavin adenine dinucleotide) and phosphomolybdic acid (PMo12 ) to recover cadmium(II) (Cd(II)) stressed denitrification. By inhibiting 58.02% and 48.84% of nitrate reductase and nitrite reductase activities, Cd(II) caused all the influent nitrogen to accumulate as NO3 - -N and NO2 - -N...
May 2, 2024: Bioresource Technology
https://read.qxmd.com/read/38703777/slower-cdk4-and-faster-cdk2-activation-in-the-cell-cycle
#3
JOURNAL ARTICLE
Wengang Zhang, Yonglan Liu, Hyunbum Jang, Ruth Nussinov
Dysregulation of cyclin-dependent kinases (CDKs) impacts cell proliferation, driving cancer. Here, we ask why the cyclin-D/CDK4 complex governs cell cycle progression through the longer G1 phase, whereas cyclin-E/CDK2 regulates the shorter G1/S phase transition. We consider available experimental cellular and structural data including cyclin-E's high-level burst, sustained duration of elevated cyclin-D expression, and explicit solvent molecular dynamics simulations of the inactive monomeric and complexed states, to establish the conformational tendencies along the landscape of the distinct activation scenarios of cyclin-D/CDK4 and cyclin-E/CDK2 in the G1 phase and G1/S transition of the cell cycle, respectively...
April 23, 2024: Structure
https://read.qxmd.com/read/38702921/microsporidia-pervasive-natural-pathogens-of-caenorhabditis-elegans-and-related-nematodes
#4
REVIEW
Spencer S Gang, Vladimir Lažetić
The nematode Caenorhabditis elegans is an invaluable host model for studying infections caused by various pathogens, including microsporidia. Microsporidia represent the first natural pathogens identified in C. elegans, revealing the previously unknown Nematocida genus of microsporidia. Following this discovery, the utilization of nematodes as a model host has rapidly expanded our understanding of microsporidia biology and has provided key insights into the cell and molecular mechanisms of antimicrosporidia defenses...
May 3, 2024: Journal of Eukaryotic Microbiology
https://read.qxmd.com/read/38702302/high-resolution-tibetan-plateau-regional-reanalysis-1961-present
#5
JOURNAL ARTICLE
Peifeng Zhou, Jianping Tang, Mengnan Ma, Dabin Ji, Jiancheng Shi
With the rapid global warming in recent decades, the Tibetan Plateau (TP) has suffered severe impacts, such as glacier retreat, glacial lake expansion, and permafrost degradation, which threaten the lives and properties of the local and downstream populations. Regional Reanalysis (RR) is vital for TP due to the limitations of observations. In this work, a 62-year (1961-2022) long atmospheric regional reanalysis with spatial resolution of 9 km (convective gray-zone scale) and temporal resolution of 1 hour over the TP (TPRR) was developed using the Weather Research and Forecasting (WRF) model, combined with re-initialization method, spectral nudging (SN), and several optimizations...
May 3, 2024: Scientific Data
https://read.qxmd.com/read/38701638/involvement-of-somatotrophic-hormones-in-the-postpartum-regulation-of-ovarian-activity-in-mares
#6
JOURNAL ARTICLE
Maria Melchert, Jörg Aurich, Reinhard Ertl, Ursula Reichart, Ingrid Walter, Camille Gautier, Martim Kaps, Christine Aurich
Mares resume ovarian activity rapidly after foaling. Besides follicle-stimulating hormone (FSH) and luteinizing hormone (LH), the pituitary synthesizes prolactin and growth hormone which stimulate insulin-like growth factor (IGF) synthesis in the liver. We tested the hypothesis that follicular growth is initiated already antepartum, mares with early and delayed ovulation differ in IGF-1 release and that there is an additional IGF-1 synthesis in the placenta. Plasma concentrations of LH, FSH, IGF-1, IGF-2, activin and prolactin...
April 26, 2024: Domestic Animal Endocrinology
https://read.qxmd.com/read/38701077/a-mathematical-model-for-the-role-of-dopamine-d2-self-regulation-in-the-production-of-ultradian-rhythms
#7
JOURNAL ARTICLE
An Qi Zhang, Martin R Ralph, Adam R Stinchcombe
Many self-motivated and goal-directed behaviours display highly flexible, approximately 4 hour ultradian (shorter than a day) oscillations. Despite lacking direct correspondence to physical cycles in the environment, these ultradian rhythms may be involved in optimizing functional interactions with the environment and reflect intrinsic neural dynamics. Current evidence supports a role of mesostriatal dopamine (DA) in the expression and propagation of ultradian rhythmicity, however, the biochemical processes underpinning these oscillations remain to be identified...
May 3, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38700385/lif-rich-solid-electrolyte-interphase-formation-by-establishing-sacrificial-layer-on-the-separator
#8
JOURNAL ARTICLE
Huding Jin, Seonmi Pyo, Harim Seo, Jinil Cho, Junghyup Han, Juyeon Han, Heejun Yun, Heebae Kim, Jeewon Lee, Byeongyun Min, Jeeyoung Yoo, Youn Sang Kim
The formation of a stable solid electrolyte interphase (SEI) layer is crucial for enhancing the safety and lifespan of Li metal batteries. Fundamentally, a homogeneous Li+ behavior by controlling the chemical reaction at the anode/electrolyte interface is the key to establishing a stable SEI layer. However, due to the highly reactive nature of Li metal anodes (LMAs), controlling the movement of Li+ at the anode/electrolyte interface remains challenging. Here, an advanced approach is proposed for coating a sacrificial layer called fluorinated self-assembled monolayer (FSL) on a boehmite-coated polyethylene (BPE) separator to form a stable SEI layer...
May 3, 2024: Small
https://read.qxmd.com/read/38699709/ecology-of-freshwater-harmful-euglenophytes-a-review
#9
REVIEW
Sunzida Sultana, Saleha Khan, Nowrin Akter Shaika, Sadia Momota Hena, Yahia Mahmud, Md Mahfuzul Haque
A diverse array of aquatic ecosystems are inhabited by the euglenophytes, a group of autotrophic and eukaryotic organisms. In inland waterbodies, the red bloom is caused by a rapid development or accumulation of euglenophytes. Recent studies have designated euglenophytes as bioindicator of organic pollution. The ecology of euglenophytes is influenced by the changes in the intensity of sunlight, temperature, nutrient cycles, and seasons. Most of the species of euglenophytes grow prolifically with the increase of water temperature...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38699182/a-comprehensive-dataset-on-biomechanics-and-motor-control-during-human-walking-with-discrete-mechanical-perturbations
#10
JOURNAL ARTICLE
Dana L Lorenz, Antonie J van den Bogert
BACKGROUND: Humans have a remarkable capability to maintain balance while walking. There is, however, a lack of publicly available research data on reactive responses to destabilizing perturbations during gait. METHODS: Here, we share a comprehensive dataset collected from 10 participants who experienced random perturbations while walking on an instrumented treadmill. Each participant performed six 5-min walking trials at a rate of 1.2 m/s, during which rapid belt speed perturbations could occur during the participant's stance phase...
2024: PeerJ
https://read.qxmd.com/read/38698918/facile-and-rapid-fabrication-of-a-novel-3d-printable-visible-light-crosslinkable-and-bioactive-polythiourethane-for-large-to-massive-rotator-cuff-tendon-repair
#11
JOURNAL ARTICLE
Xu Zhang, Ke Li, Chenyang Wang, Ying Rao, Rocky S Tuan, Dan Michelle Wang, Dai Fei Elmer Ker
Facile and rapid 3D fabrication of strong, bioactive materials can address challenges that impede repair of large-to-massive rotator cuff tears including personalized grafts, limited mechanical support, and inadequate tissue regeneration. Herein, we developed a facile and rapid methodology that generates visible light-crosslinkable polythiourethane (PHT) pre-polymer resin (∼30 min at room temperature), yielding 3D-printable scaffolds with tendon-like mechanical attributes capable of delivering tenogenic bioactive factors...
July 2024: Bioactive Materials
https://read.qxmd.com/read/38698572/ultralight-three-layer-gradient-structured-mxene-reduced-graphene-oxide-composite-aerogels-with-broadband-microwave-absorption-and-dynamic-infrared-camouflage
#12
JOURNAL ARTICLE
Chi Yu, Dexuan Lin, Jianhua Guo, Kunjun Zhuang, Yuanwei Yao, Xin Zhang, Xinghua Jiang
Infrared and radar detectors posed substantial challenges to weapon equipment and personnel due to their continuous surveillance and reconnaissance capabilities. Traditional single-band stealth devices are insufficient for dual-band detection in both infrared and microwave bands. To overcome this limitation, a gradient-structured MXene/reduced graphene oxide (rGO) composite aerogel (GMXrGA) is fabricated through a two-step bidirectional freeze casting process, followed by freeze-drying and thermal annealing...
May 2, 2024: Small
https://read.qxmd.com/read/38698342/utilizing-transcriptomics-and-proteomics-to-unravel-key-genes-and-proteins-of-oryza-sativa-seedlings-mediated-by-selenium-in-response-to-cadmium-stress
#13
JOURNAL ARTICLE
Sixi Zhu, Suxia Sun, Wei Zhao, Xiuqin Yang, Huan Mao, Luying Sheng, Zhongbing Chen
BACKGROUND: Cadmium (Cd) pollution has declined crop yields and quality. Selenium (Se) is a beneficial mineral element that protects plants from oxidative damage, thereby improving crop tolerance to heavy metals. The molecular mechanism of Se-induced Cd tolerance in rice (Oryza sativa) is not yet understood. This study aimed to elucidate the beneficial mechanism of Se (1 mg/kg) in alleviating Cd toxicity in rice seedlings. RESULTS: Exogenous selenium addition significantly improved the toxic effect of cadmium stress on rice seedlings, increasing plant height and fresh weight by 20...
May 3, 2024: BMC Plant Biology
https://read.qxmd.com/read/38698198/rationally-designed-chromosome-fusion-does-not-prevent-rapid-growth-of-vibrio-natriegens
#14
JOURNAL ARTICLE
Lea Ramming, Daniel Stukenberg, María Del Carmen Sánchez Olmos, Timo Glatter, Anke Becker, Daniel Schindler
DNA replication is essential for the proliferation of all cells. Bacterial chromosomes are replicated bidirectionally from a single origin of replication, with replication proceeding at about 1000 bp per second. For the model organism, Escherichia coli, this translates into a replication time of about 40 min for its 4.6 Mb chromosome. Nevertheless, E. coli can propagate by overlapping replication cycles with a maximum short doubling time of 20 min. The fastest growing bacterium known, Vibrio natriegens, is able to replicate with a generation time of less than 10 min...
May 2, 2024: Communications Biology
https://read.qxmd.com/read/38697133/author-please-check-funding-information-and-confirm-its-correctness-a-strong-and-highly-transparent-ionogel-electrolyte-enabled-by-in-situ-polymerization-induced-microphase-separation-for-high-performance-electrochromic-devices
#15
JOURNAL ARTICLE
Xuan Zhou, Kaijian Zhou, Liang Tang, Zhanying Chen, Qinyu Hu, Jie Gao, Yan Zhang, Jun Zhang, Shiguo Zhang
Electrochromic devices built with ionogel electrolytes are seen as a pivotal step towards the future of quasi-solid electrochromic devices, due to their striking properties like exceptional safety and high ionic conductivity. Yet, the poor mechanical strength of electrolyte of these devices remains a constraint that hampers their advancement. As a resolution, this research explores the use of a robust, transparent ionogel electrolyte, which is designed using an in-situ microphase separation strategy. The ionogels are highly transparent and robust and exhibit excellent physicochemical stability, including a wide electrochemical window and high temperature tolerance...
May 2, 2024: Macromolecular Rapid Communications
https://read.qxmd.com/read/38696303/transgenic-expression-of-rubisco-accumulation-factor2-and-rubisco-subunits-increases-photosynthesis-and-growth-in-maize
#16
JOURNAL ARTICLE
Kathryn Eshenour, Amber Hotto, Elena J S Michel, Zhen Guo Oh, David B Stern
Carbon assimilation by Rubisco is often a limitation to photosynthesis and therefore plant productivity. We have previously shown that transgenic co-expression of the Rubisco large (LS) and small (SS) subunits along with an essential Rubisco assembly factor, Raf1, leads to faster growth, increased photosynthesis, and enhanced chilling tolerance in maize (Zea mays). Maize also requires Rubisco Accumulation Factor2 (Raf2) for full accumulation of Rubisco. Here we have analyzed transgenic maize lines with increased expression of Raf2 or Raf2 plus LS and SS...
May 2, 2024: Journal of Experimental Botany
https://read.qxmd.com/read/38695644/establishment-of-genome-editing-system-and-assembly-of-a-near-complete-genome-in-broomcorn-millet
#17
JOURNAL ARTICLE
Yang Liu, Zixiang Cheng, Weiyao Chen, Chuanyin Wu, Jinfeng Chen, Yi Sui
The ancient crop broomcorn millet (Panicum miliaceum L.) is an indispensable orphan crop in semi-arid regions due to its short life cycle and excellent abiotic stress tolerance. These advantages make it an important alternative crop to increase food security and achieve the goal of zero hunger, particularly in light of the uncertainty of global climate change. However, functional genomic and biotechnological research in broomcorn millet has been hampered due to a lack of genetic tools such as transformation and genome-editing techniques...
May 2, 2024: Journal of Integrative Plant Biology
https://read.qxmd.com/read/38695606/profiling-the-interplay-and-coevolution-of-microcystis-aeruginosa-and-cyanosiphophage-mic1
#18
JOURNAL ARTICLE
Xiao-Qian Wang, Kang Du, Chaoyi Chen, Pu Hou, Wei-Fang Li, Yuxing Chen, Qiong Li, Cong-Zhao Zhou
UNLABELLED: The cyanosiphophage Mic1 specifically infects the bloom-forming Microcystis aeruginosa FACHB 1339 from Lake Chaohu, China. Previous genomic analysis showed that its 92,627 bp double-stranded DNA genome consists of 98 putative open reading frames, 63% of which are of unknown function. Here, we investigated the transcriptome dynamics of Mic1 and its host using RNA sequencing. In the early, middle, and late phases of the 10 h lytic cycle, the Mic1 genes are sequentially expressed and could be further temporally grouped into two distinct clusters in each phase...
May 2, 2024: Microbiology Spectrum
https://read.qxmd.com/read/38695440/hydrated-calcium-vanadate-nanoribbons-with-a-stable-structure-and-fast-ion-diffusion-as-a-cathode-for-quasi-solid-state-zinc-ion-batteries
#19
JOURNAL ARTICLE
Penghua Liang, Kongjun Zhu, Yu Rao, Zhihan Kong, Jiatao Chen, Hongjuan Zheng, Jinsong Liu, Kang Yan, Jing Wang, Kaiyang Zeng
We demonstrated the use of hydrated calcium vanadate (CaV6 O16 ·3H2 O, denoted as CaVO-2) as a cathode for aqueous zinc-ion batteries (AZIBs). Nanoribbons of hydrated calcium vanadate facilitated shortening of the Zn2+ transport distance and accelerated zinc-ion insertion. The introduction of interlayer structure water increased the interlayer spacing of calcium vanadate and as a "lubricant". Ca2+ insertion also expanded the interlayer spacing and further stabilized the interlayer structure of vanadium-based oxide...
May 2, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38694202/orexin-neurons-to-sublaterodorsal-tegmental-nucleus-pathway-prevents-sleep-onset-rem-sleep-like-behavior-by-relieving-the-rem-sleep-pressure
#20
JOURNAL ARTICLE
Hui Feng, Qi-Cheng Qiao, Qi-Fa Luo, Jun-Ying Zhou, Fei Lei, Yao Chen, Si-Yi Wen, Wen-Hao Chen, Yu-Jie Pang, Zhi-An Hu, Yi-Bin Jiang, Xu-Yang Zhang, Teng-Yuan Zhou, Xin-Yan Zhang, Nian Yang, Jun Zhang, Rong Hu
Proper timing of vigilance states serves fundamental brain functions. Although disturbance of sleep onset rapid eye movement (SOREM) sleep is frequently reported after orexin deficiency, their causal relationship still remains elusive. Here, we further study a specific subgroup of orexin neurons with convergent projection to the REM sleep promoting sublaterodorsal tegmental nucleus (OXSLD neurons). Intriguingly, although OXSLD and other projection-labeled orexin neurons exhibit similar activity dynamics during REM sleep, only the activation level of OXSLD neurons exhibits a significant positive correlation with the post-inter-REM sleep interval duration, revealing an essential role for the orexin-sublaterodorsal tegmental nucleus (SLD) neural pathway in relieving REM sleep pressure...
2024: Research: a science partner journal
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