keyword
https://read.qxmd.com/read/33139859/dpp4-exosomes-in-aml-patients-plasma-suppress-proliferation-of-hematopoietic-progenitor-cells
#21
JOURNAL ARTICLE
Swathi Namburi, Hal E Broxmeyer, Chang-Sook Hong, Theresa L Whiteside, Michael Boyiadzis
Mechanisms by which acute myeloid leukemia (AML) interferes with normal hematopoiesis are under intense investigation. Emerging evidence suggests that exosomes produced by leukemia blasts suppress hematopoiesis. Exosomes isolated from AML patients' plasma at diagnosis significantly and dose-dependently suppressed colony formation of normal hematopoietic progenitor cells (HPC). Levels of HPC suppression mediated by exosomes of AML patients who achieved complete remission (CR) were significantly decreased compared to those observed at AML diagnosis...
November 2, 2020: Leukemia
https://read.qxmd.com/read/32933482/adept-a-domain-independent-sequence-alignment-strategy-for-gpu-architectures
#22
JOURNAL ARTICLE
Muaaz G Awan, Jack Deslippe, Aydin Buluc, Oguz Selvitopi, Steven Hofmeyr, Leonid Oliker, Katherine Yelick
BACKGROUND: Bioinformatic workflows frequently make use of automated genome assembly and protein clustering tools. At the core of most of these tools, a significant portion of execution time is spent in determining optimal local alignment between two sequences. This task is performed with the Smith-Waterman algorithm, which is a dynamic programming based method. With the advent of modern sequencing technologies and increasing size of both genome and protein databases, a need for faster Smith-Waterman implementations has emerged...
September 15, 2020: BMC Bioinformatics
https://read.qxmd.com/read/31633780/metagenome-assembled-genomes-orchestra-mago-computational-framework-for-high-quality-production-and-large-scale-evolutionary-analysis-of-metagenome-assembled-genomes
#23
JOURNAL ARTICLE
Boštjan Murovec, Leon Deutsch, Blaz Stres
Microbial species play important roles in different environments and the production of high-quality genomes from metagenome datasets represents a major obstacle to understanding their ecological and evolutionary dynamics. Metagenome-Assembled Genomes Orchestra (MAGO) is a computational framework that integrates and simplifies metagenome assembly, binning, bin improvement, bin quality (completeness and contamination), bin annotation, and evolutionary placement of bins via detailed maximum-likelihood phylogeny based on multiple marker genes using different amino acid substitution models, next to average nucleotide identity analysis of genomes for delineation of species boundaries and operational taxonomic units...
October 21, 2019: Molecular Biology and Evolution
https://read.qxmd.com/read/31556345/transcriptomic-profiling-of-acute-cold-stress-induced-disease-resistance-sidr-genes-and-pathways-in-the-grapevine-powdery-mildew-pathosystem
#24
JOURNAL ARTICLE
William A Weldon, Cal D Palumbo, Allison P Kovaleski, Kiersten Tancos, David M Gadoury, Michael V Osier, Lance Cadle-Davidson
Temperatures from 2 to 8o C transiently induce quantitative resistance to powdery mildew in several host species (cold stress-induced disease resistance, or SIDR). Although cold SIDR events occur in vineyards worldwide an average of 14 to 21 times after budbreak of grapevine and can significantly delay grapevine powdery mildew ( Erysiphe necator ) epidemics, its molecular basis was poorly understood. We characterized the biology underlying the Vitis vinifera cold SIDR phenotype - which peaks at 24 hours post-cold treatment (hpc) and results in a 22 to 28% reduction in spore penetration success - through highly replicated (n = 8 to 10) RNAseq experiments...
September 26, 2019: Molecular Plant-microbe Interactions: MPMI
https://read.qxmd.com/read/31394142/estradiol-and-selective-estrogen-receptor-agonists-differentially-affect-brain-monoamines-and-amino-acids-levels-in-transitional-and-surgical-menopausal-rat-models
#25
JOURNAL ARTICLE
Tao Long, Jeffrey K Yao, Junyi Li, Ziv Z Kirshner, Doug Nelson, George G Dougherty, Robert B Gibbs
Estrogens have many beneficial effects in the brain. Previously, we evaluated the effects of two models of menopause (surgical vs. transitional) on multiple monoaminergic endpoints in different regions of the adult rat brain in comparison with levels in gonadally intact rats. Here we evaluated the effects of estrogen receptor (ER) agonist treatments in these same two models of menopause. Neurochemical endpoints were evaluated in the hippocampus (HPC), frontal cortex (FCX), and striatum (STR) of adult ovariectomized (OVX) rats and in rats that underwent selective and gradual ovarian follicle depletion by daily injection of 4-vinylcyclohexene-diepoxide (VCD), after 1- and 6-weeks treatment with 17β-estradiol (E2), or with selective ERα (PPT), ERβ (DPN), or GPR30 (G-1) agonists...
October 1, 2019: Molecular and Cellular Endocrinology
https://read.qxmd.com/read/31160030/hyperthermophilic-pretreatment-composting-significantly-accelerates-humic-substances-formation-by-regulating-precursors-production-and-microbial-communities
#26
JOURNAL ARTICLE
Ying Huang, Danyang L, Ghulam Mustafa Shah, Wei Chen, Wei Wang, Yueding Xu, Hongying Huang
Hyperthermophilic pretreatment composting (HPC) is superior to traditional composting (TC) with enhanced compost maturity and accelerated humic substances (HS) formation. However, the regulators affecting HS formation, which is of great importance in evaluating the compost maturity, are still unclear. This study aimed to examine and compare the effects of HPC and TC on (i) HS formations under varying precursors, (ii) bacterial and fungal dynamics, and (iii) factors affecting HS formations. Results revealed that HS formation was accelerated in the heating, thermophilic and maturity phases for HPC, whereas the synthesis of HS was observed in the maturity phase for TC...
June 1, 2019: Waste Management
https://read.qxmd.com/read/28686806/hippocampal-damage-causes-retrograde-but-not-anterograde-memory-loss-for-context-fear-discrimination-in-rats
#27
JOURNAL ARTICLE
Justin Q Lee, Robert J Sutherland, Robert J McDonald
There is a substantial body of evidence that the hippocampus (HPC) plays and essential role in context discrimination in rodents. Studies reporting anterograde amnesia (AA) used repeated, alternating, distributed conditioning and extinction sessions to measure context fear discrimination. In addition, there is uncertainty about the extent of damage to the HPC. Here, we induced conditioned fear prior to discrimination tests and rats sustained extensive, quantified pre- or post-training HPC damage. Unlike previous work, we found that extensive HPC damage spares context discrimination, we observed no AA...
September 2017: Hippocampus
https://read.qxmd.com/read/27167356/hematopoietic-progenitor-cell-mobilization-is-more-robust-in-healthy-african-american-compared-to-caucasian-donors-and-is-not-affected-by-the-presence-of-sickle-cell-trait
#28
COMPARATIVE STUDY
Sandhya R Panch, Yu Ying Yau, Courtney D Fitzhugh, Matthew M Hsieh, John F Tisdale, Susan F Leitman
BACKGROUND: Granulocyte-colony-stimulating factor (G-CSF)-stimulated hematopoietic progenitor cells (HPCs) collected by apheresis have become the predominant graft source for HPC transplantation in adults. Among healthy allogeneic donors, demographic characteristics (age, sex, body mass index [BMI]) and baseline hematologic counts affect HPC mobilization, leading to variability in CD34+ apheresis yields. Racial differences in HPC mobilization are less well characterized. STUDY DESIGN AND METHODS: We retrospectively analyzed data from 1096 consecutive G-CSF-stimulated leukapheresis procedures in healthy allogeneic African American (AA) or Caucasian donors...
May 2016: Transfusion
https://read.qxmd.com/read/25684047/prenatal-alcohol-exposure-alters-steady-state-and-activated-gene-expression-in-the-adult-rat-brain
#29
JOURNAL ARTICLE
Alexandre A Lussier, Katarzyna A Stepien, Sarah M Neumann, Paul Pavlidis, Michael S Kobor, Joanne Weinberg
BACKGROUND: Prenatal alcohol exposure (PAE) is associated with alterations in numerous physiological systems, including the stress and immune systems. We have previously shown that PAE increases the course and severity of arthritis in an adjuvant-induced arthritis (AA) model. While the molecular mechanisms underlying these effects are not fully known, changes in neural gene expression are emerging as important factors in the etiology of PAE effects. As the prefrontal cortex (PFC) and hippocampus (HPC) play key roles in neuroimmune function, PAE-induced alterations to their transcriptome may underlie abnormal steady-state functions and responses to immune challenge...
February 2015: Alcoholism, Clinical and Experimental Research
https://read.qxmd.com/read/25192856/a-simple-approach-to-fabricate-granular-adsorbent-for-adsorption-of-rare-elements
#30
JOURNAL ARTICLE
Yongfeng Zhu, Yian Zheng, Aiqin Wang
A kind of granular hybrid hydrogel was prepared under an ambient temperature in air atmosphere using Fenton reagent as the redox initiator, and its three-dimensional structured polymeric network can be formed by the grafting reaction of acrylic acid (AA) onto hydroxypropyl cellulose (HPC) with attapulgite (APT) as the inorganic component. The resulting granular hybrid hydrogel was marked as HPC-g-PAA/APT and used as the adsorbent to remove the rare earth elements, La(III) and Ce(III). The effects of pH and APT content on the adsorption capacity, as well as the adsorption isotherms and kinetics, were systematically investigated...
January 2015: International Journal of Biological Macromolecules
https://read.qxmd.com/read/24750933/novel-thermo-and-ph-responsive-hydroxypropyl-cellulose-and-poly-l-glutamic-acid-based-microgels-for-oral-insulin-controlled-release
#31
JOURNAL ARTICLE
Yunyan Bai, Zhe Zhang, Aiping Zhang, Li Chen, Chaoliang He, Xiuli Zhuang, Xuesi Chen
Novel smart microgel particles made of poly (L-glutamic acid-2-hydroxylethyl methacrylate) (PGH) and hydroxypropyl cellulose-acrylic acid (HPC-AA) have been successfully prepared via emulsion polymerization. The dynamic light scattering measurement reveals that the average hydrodynamic radius 〈Rh〉 and hydrodynamic radius distributions f (Rh) of the microgel particles depend on the temperature and pH value thus the microgel particles exhibit both pH- and temperature-sensitivity. In vitro release study shows that the amount of insulin released from microgels in the gastric juice (at pH 1...
August 1, 2012: Carbohydrate Polymers
https://read.qxmd.com/read/23474648/plasma-arginine-levels-and-blood-glucose-control-in-very-preterm-infants-receiving-2-different-parenteral-nutrition-regimens
#32
RANDOMIZED CONTROLLED TRIAL
Laura Burgess, Colin Morgan, Kelly Mayes, Maw Tan
BACKGROUND: Improving parenteral nutrition (PN) amino acid (AA) intake in very preterm infants is associated with less hyperglycemia. AAs stimulate newborn insulin secretion with arginine, demonstrating a specific effect. We hypothesized that low arginine levels would be associated with increased insulin-treated hyperglycemia and higher mean daily blood glucose levels in very preterm infants. METHODS: We performed a secondary analysis on previous study data comparing high-protein/calorie PN (HPC-PN) and control groups in infants <29 weeks' gestation...
February 2014: JPEN. Journal of Parenteral and Enteral Nutrition
https://read.qxmd.com/read/23083000/does-an-anti-oxidant-ascorbic-acid-improve-the-condition-of-hippocampal-formation-slice-preparations-a-micro-eeg-approach
#33
JOURNAL ARTICLE
Paulina Kazmierska, Jacek Grebowski, Jan Konopacki
The objective of this study was to assess whether ascorbic acid (AA), an intracellular anti-oxidant critical for neuronal protection, when added to artificial cerebrospinal fluid (ACSF), is able to protect hippocampal (HPC) formation slice preparations from ageing. In this research, the micro-electroencephalographic (EEG) technique was applied. Experiments were performed on 72 HPC formation slices obtained from 12 male Wistar rats. Two series of experiments were conducted: the control experiment, in which ACSF was used as an incubation medium, and the research one, in which ACSF was supplemented with 200 μM AA...
December 2012: International Journal of Experimental Pathology
https://read.qxmd.com/read/21437259/serum-after-autologous-transplantation-stimulates-proliferation-and-expansion-of-human-hematopoietic-progenitor-cells
#34
JOURNAL ARTICLE
Thomas Walenda, Gudrun Bokermann, Edgar Jost, Oliver Galm, Anne Schellenberg, Carmen M Koch, Daniela M Piroth, Wolf Drescher, Tim H Brümmendorf, Wolfgang Wagner
Regeneration after hematopoietic stem cell transplantation (HSCT) depends on enormous activation of the stem cell pool. So far, it is hardly understood how these cells are recruited into proliferation and self-renewal. In this study, we have addressed the question if systemically released factors are involved in activation of hematopoietic stem and progenitor cells (HPC) after autologous HSCT. Serum was taken from patients before chemotherapy, during neutropenia and after hematopoietic recovery. Subsequently, it was used as supplement for in vitro culture of CD34(+) cord blood HPC...
2011: PloS One
https://read.qxmd.com/read/20656972/amino-acid-digestibility-and-energy-concentration-of-high-protein-corn-dried-distillers-grains-and-high-protein-sorghum-dried-distillers-grains-with-solubles-for-swine
#35
RANDOMIZED CONTROLLED TRIAL
J Y Jacela, H L Frobose, J M DeRouchey, M D Tokach, S S Dritz, R D Goodband, J L Nelssen
A study was conducted to determine the AA digestibility and energy concentration of a specialized high-protein corn distillers dried grains (HPC-DDG) product and a high-protein sorghum dried distillers grains with solubles (HPS-DDGS) product. Six growing barrows (BW = 22.7 kg) were surgically fitted with T-cannulas at the terminal ileum and allotted randomly to 3 treatments in a crossover design with 3 periods. The treatment diets were 1) 67% HPC-DDG and 2) 50% HPS-DDGS as the sole protein sources, and 3) an N-free diet for determining basal endogenous AA loss...
November 2010: Journal of Animal Science
https://read.qxmd.com/read/20201483/thermal-sensitive-microgels-with-stable-and-reversible-photoluminescence-based-on-covalently-bonded-quantum-dots
#36
JOURNAL ARTICLE
Hongjing Dou, Weihai Yang, Ke Tao, Wanwan Li, Kang Sun
In this study, thermal sensitive microgels functionalized with carboxyl groups were synthesized directly from hydroxypropyl cellulose (HPC) and acrylic acid (AA) without using any organic solvent. Furthermore, covalently bonded hybrid microgels with novel thermosensitivity in terms of size and fluorescence were fabricated from these HPC-PAA microgels and cysteamine-capped CdTe quantum dots (QDs). The composition of the hybrid microgels were characterized by thermal thermogravimetric analysis (TGA) and coulometric titration...
April 6, 2010: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/20079880/beta-oxidation-modulates-metabolic-competition-between-eicosapentaenoic-acid-and-arachidonic-acid-regulating-prostaglandin-e-2-synthesis-in-rat-hepatocytes-kupffer-cells
#37
JOURNAL ARTICLE
Zhen-Yu Du, Tao Ma, Synnøve Winterthun, Karsten Kristiansen, Livar Frøyland, Lise Madsen
The ability of n-3 PUFA to competitively inhibit the use of arachidonic acid (AA) for membrane phospholipid synthesis and prostaglandin E(2) (PGE(2)) production has been well demonstrated in single cell models. In the present study, we investigated the metabolic competition between AA and eicosapentaenoic acid (EPA) for PGE(2) synthesis in a rat hepatocyte-Kupffer cell (HPC/KC) co-culture system when the cellular oxidation capacity was enhanced by exogenous l-carnitine. We demonstrate that in the absence of l-carnitine, 1) beta-oxidation rates of EPA and AA were comparable in HPCs and in KCs; 2) AA and not EPA was preferentially incorporated into glycerolipids; and 3) addition of EPA significantly decreased AA-dependent PGE(2) synthesis in HPCs and cyclooxygenase-2 (COX-2) expression in co-cultured HPCs/KCs...
April 2010: Biochimica et Biophysica Acta
https://read.qxmd.com/read/19643130/characteristics-of-xanthan-gum-based-biodegradable-superporous-hydrogel
#38
JOURNAL ARTICLE
Palapparambil Sunny Gils, Debajyoti Ray, Prafulla Kumar Sahoo
A novel biopolymer-based superporous hydrogel (SPH) was synthesized through chemical crosslinking by graft copolymerization of 2-hydroxyethyl methacrylate (HEMA) and acrylic acid (AA) on to xanthan gum (XG) via redox initiator system of ammonium persulfate (APS) and N, N, N', N'-tetramethylethylenediamine (TMED), in the presence of N, N'-methylenebisacrylamide (MBA) crosslinking agent, sodium bicarbonate foaming agent, a triblock copolymer of polyoxyethylene/polyoxypropylene/polyoxyethylene as a foam stabilizer...
November 1, 2009: International Journal of Biological Macromolecules
https://read.qxmd.com/read/19403174/identification-of-interleukin-22-in-gadoids-and-examination-of-its-expression-level-in-vaccinated-fish
#39
JOURNAL ARTICLE
Yolanda Corripio-Miyar, Jun Zou, Heather Richmond, Chris J Secombes
This paper reports the cloning and sequencing of interleukin (IL)-22 in two gadoid fish, cod (Gadus morhua) and haddock (Melanogrammus aeglefinus). The complete transcript of this gene was 1002 and 1154 bp respectively, of which 492 bp was the open reading frame (ORF) in both genes. High amino acid identity (88.3%) was found between these genes but was less than 50% aa identity to other known genes. The gene organisation of haddock IL-22 consisted of five exons and four introns, as with other IL-10 family members...
June 2009: Molecular Immunology
https://read.qxmd.com/read/18759474/synthesis-of-hydroxypropylcellulose-poly-acrylic-acid-particles-with-semi-interpenetrating-polymer-network-structure
#40
JOURNAL ARTICLE
Ying Chen, Dan Ding, Zhiqing Mao, Yafeng He, Yong Hu, Wei Wu, Xiqun Jiang
To develop a novel type of semi-IPN particles using biocompatible materials, hydroxypropylcellulose-poly(acrylic acid) (HPC-PAA) particles with semi-interpenetrating polymer network structure and a porosity-structural surface were prepared by direct polymerization of acrylic acid monomer in the reaction system comprised of HPC and AA monomer and N,N'-methylenebisacrylamide (MBAAm). The properties of HPC-PAA gel particles were characterized by dynamic light scattering, FT-IR, transmission electron microscopy, and atomic force microscope...
October 2008: Biomacromolecules
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