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https://www.readbyqxmd.com/read/27185398/ubr-5-a-conserved-hect-type-e3-ubiquitin-ligase-negatively-regulates-notch-type-signaling-in-caenorhabditis-elegans
#1
Komal Safdar, Anniya Gu, Xia Xu, Vinci Au, Jon Taylor, Stephane Flibotte, Donald G Moerman, Eleanor M Maine
Notch-type signaling mediates cell-cell interactions important for animal development. In humans, reduced or inappropriate Notch signaling activity is associated with various developmental defects and disease states, including cancers. Caenorhabditis elegans expresses two Notch-type receptors, GLP-1 and LIN-12. GLP-1 mediates several cell-signaling events in the embryo and promotes germline proliferation in the developing and adult gonad. LIN-12 acts redundantly with GLP-1 in certain inductive events in the embryo and mediates several cell-cell interactions during larval development...
2016: G3: Genes—Genomes—Genetics
https://www.readbyqxmd.com/read/27114451/characterization-of-dynamic-ubr-proteasome-subcomplexes-by-in-vivo-cross-linking-x-assisted-bimolecular-tandem-affinity-purification-xbap-and-label-free-quantitation
#2
Clinton Yu, Yingying Yang, Xiaorong Wang, Shenheng Guan, Lei Fang, Fen Liu, Kylie J Walters, Peter Kaiser, Lan Huang
Proteasomes are protein degradation machines that exist in cells as heterogeneous and dynamic populations. A group of proteins function as ubiquitin receptors (UbRs) that can recognize and deliver ubiquitinated substrates to proteasome complexes for degradation. Defining composition of proteasome complexes engaged with UbRs is critical to understand proteasome function. However, because of the dynamic nature of UbR interactions with the proteasome, it remains technically challenging to capture and isolate UbR-proteasome subcomplexes using conventional purification strategies...
July 2016: Molecular & Cellular Proteomics: MCP
https://www.readbyqxmd.com/read/26488613/robuvit%C3%A2-and-endurance-in-triathlon-improvements-in-training-performance-recovery-and-oxidative-stress
#3
M G Vinciguerra, G Belcaro, M Cacchio
AIM: The aim of this registry study was to evaluate the effects of supplementation with Robuvit® (Quercus robur wood extract, or "QR") on performance and endurance in triathlon by evaluating amateur athletes in a period of 2 weeks of training. Supplementation with QR may improve training efficiency (by decreasing post-triathlon, muscular pain, cramps and by improving recovery time). Robuvit® should decrease post-training plasma free radicals (PFR). METHODS: Sixty-one subjects (age range 30-40) were included in the study...
October 2015: Minerva Cardioangiologica
https://www.readbyqxmd.com/read/26334349/inhibition-of-the-arg-n-end-rule-pathway-mediated-proteolysis-by-dipeptide-mimetic-molecules
#4
Kenji Kitamura
Ubr11 in the fission yeast Schizosaccharomyces pombe is an evolutionarily conserved ubiquitin ligase functioning in the Arg/N-end rule pathway, which promotes degradation of substrate proteins via the proteasome. Ubr11 recognizes the N-degron sequence in substrates. The primary N-degron contains a destabilization-inducing N-terminal amino acid, which is either a basic (type 1) or bulky hydrophobic (type 2) residue. Dipeptides are known to inhibit proteolytic degradation via the Arg/N-end rule pathway. Here, I examined the potency of some amino acid- or dipeptide-related molecules in their inhibition of Ubr11/N-end rule-mediated degradation...
January 2016: Amino Acids
https://www.readbyqxmd.com/read/26268556/the-n-terminal-ubiquitin-binding-region-of-ubiquitin-specific-protease-28-modulates-its-deubiquitination-function-nmr-structural-and-mechanistic-insights
#5
Yi Wen, Li Shi, Yiluan Ding, Rong Cui, Wen-tian He, Hong-yu Hu, Naixia Zhang
The deubiquitinase ubiquitin-specific protease 28 (Usp28) contains a ubiquitin-binding region (UBR) composed of one ubiquitin-associated domain (UBA) and one ubiquitin-interacting motif (UIM) at its N-terminus. It is of interest that an additional small ubiquitin-like modifier (SUMO)-interacting motif (SIM) is located next to its UIM. To date, the functional role of the Usp28 UBR is still not understood. To elucidate the regulatory mechanism of the UBR on the full functional display of Usp28, in the present study, NMR and biochemical approaches were applied...
October 15, 2015: Biochemical Journal
https://www.readbyqxmd.com/read/26185100/the-ubr-box-and-its-relationship-to-binuclear-ring-like-treble-clef-zinc-fingers
#6
Gurmeet Kaur, Srikrishna Subramanian
BACKGROUND: The N-end rule pathway is a part of the ubiquitin-dependent proteolytic system wherein N-recognin proteins recognize the amino terminal degradation signals (N-degrons) of the substrate. The type 1 N-degron recognizing UBR-box domain of the eukaryotic Arg/N-end rule pathway is known to possess a novel three-zinc-stabilized heart-shaped fold. RESULTS: Using sequence and structure analysis we argue that the UBR-box fold emerged from a binuclear RING-like treble clef zinc finger...
July 17, 2015: Biology Direct
https://www.readbyqxmd.com/read/26059563/cardiac-nav-1-5-is-modulated-by-ubiquitin-protein-ligase-e3-component-n-recognin-ubr3-and-6
#7
Chunxia Zhao, Lijie Wang, Xiue Ma, Weidong Zhu, Lei Yao, Yingyu Cui, Yi Liu, Jun Li, Xingqun Liang, Yunfu Sun, Li Li, Yi-Han Chen
The voltage-gated Na(+) channel Nav 1.5 is essential for action potential (AP) formation and electrophysiological homoeostasis in the heart. The ubiquitin-proteasome system (UPS) is a major degradative system for intracellular proteins including ion channels. The ubiquitin protein ligase E3 component N-recognin (UBR) family is a part of the UPS; however, their roles in regulating cardiac Nav 1.5 channels remain elusive. Here, we found that all of the UBR members were expressed in cardiomyocytes. Individual knockdown of UBR3 or UBR6, but not of other UBR members, significantly increased Nav 1...
September 2015: Journal of Cellular and Molecular Medicine
https://www.readbyqxmd.com/read/26034658/the-clps-like-n-domain-is-essential-for-the-functioning-of-ubr11-an-n-recognin-in-schizosaccharomyces-pombe
#8
Kenji Kitamura
Several Ubr ubiquitin ligases recognize the N-terminal amino acid of substrate proteins and promote their degradation via the Arg/N-end rule pathway. The primary destabilizing N-terminal amino acids in yeast are classified into type 1 (Arg, Lys, and His) and type 2 (Phe, Trp, Tyr, Leu, Ile, and Met-Ф) residues. The type 1 and type 2 residues bind to the UBR box and the ClpS/N-domain, respectively, in canonical Ubr ubiquitin ligases that act as N-recognins. In this study, the requirement for type 1 and type 2 amino acid recognition by Schizosaccharomyces pombe Ubr11 was examined in vivo...
2014: SpringerPlus
https://www.readbyqxmd.com/read/25959931/disruption-of-in-vitro-endothelial-barrier-integrity-by-japanese-encephalitis-virus-infected-astrocytes
#9
Cheng-Yi Chang, Jian-Ri Li, Wen-Ying Chen, Yen-Chuan Ou, Ching-Yi Lai, Yu-Hui Hu, Chih-Cheng Wu, Chen-Jung Chang, Chun-Jung Chen
Blood-brain barrier (BBB) characteristics are induced and maintained by crosstalk between brain microvascular endothelial cells and neighboring cells. Using in vitro cell models, we previously found that a bystander effect was a cause for Japanese encephalitis-associated endothelial barrier disruption. Brain astrocytes, which neighbor BBB endothelial cells, play roles in the maintenance of BBB integrity. By extending the scope of relevant studies, a potential mechanism has been shown that the activation of neighboring astrocytes could be a cause of disruption of endothelial barrier integrity during the course of Japanese encephalitis viral (JEV) infection...
May 8, 2015: Glia
https://www.readbyqxmd.com/read/25896142/twelve-core-template-prostate-biopsy-is-an-unreliable-tool-to-select-patients-eligible-for-focal-therapy
#10
Lluís Fumadó, Lluís Cecchini, Nuria Juanpere, Anna Ubré, Jose Antonio Lorente, Antonio Alcaraz
INTRODUCTION: To determine whether unilateral prostate cancer diagnosed at 12-core prostate biopsy harbours relevant prostate cancer foci in contralateral lobe in cases eligible for hemiablative focal therapy. MATERIAL AND METHODS: We analysed 112 radical prostatectomies of unilateral Gleason 6/7 prostate cancer based on prostate biopsy information. The presence of significant prostate cancer foci and/or the index lesion in the contralateral lobe is described. A subanalysis is performed in cases of Gleason score 6 and in cases of very-low-risk prostate cancer...
2015: Urologia Internationalis
https://www.readbyqxmd.com/read/25861637/effect-of-different-germination-conditions-on-antioxidative-properties-and-bioactive-compounds-of-germinated-brown-rice
#11
You-Tung Lin, Cheng-Cheng Pao, Shwu-Tzy Wu, Chi-Yue Chang
This study investigates antioxidative activity and bioactive compounds of ungerminated brown rice (UBR) and germinated brown rice (GBR). We used two rice cultivars (Oryza sativa L.), Taiwan Japonica 9 (TJ-9) and Taichung Indica 10 (TCI-10), as the materials in our experiments. The conditions for inducing germination are soaking time in water 24, 48, or 72 h; temperature 26 or 36°C; incubation in light or darkness; and open or closed vessels, in which the antioxidative activities and bioactive compounds of GBR were determined...
2015: BioMed Research International
https://www.readbyqxmd.com/read/25458542/ascorbic-acid-peg-2l-is-superior-for-early-morning-colonoscopies-in-colorectal-cancer-screening-programs-a-prospective-non-randomized-controlled-trial
#12
C Rodríguez de Miguel, A Serradesanferm, M López-Cerón, S Carballal, A Pozo, F Balaguer, A Cárdenas, G Fernández-Esparrach, A Ginés, B González-Suárez, L Moreira, I Ordás, E Ricart, O Sendino, E C Vaquero, M Ubré, S del Manzano, J Grau, J Llach, A Castells, M Pellisé
BACKGROUND: The quality of colon cleansing and the tolerability of anterograde preparation are essential to the success of colorectal cancer screening. AIM: To compare the tolerability and efficacy of low-volume preparations vs the standard regimen in individuals scheduled for an early morning colonoscopy. STUDY: Participants in a population-based colorectal cancer screening program using the fecal immunochemical test who were scheduled for a colonoscopy from 09:00 a...
February 2015: Gastroenterología y Hepatología
https://www.readbyqxmd.com/read/25336939/self-efficacy-enhancing-intervention-increases-light-physical-activity-in-people-with-chronic-obstructive-pulmonary-disease
#13
RANDOMIZED CONTROLLED TRIAL
Janet L Larson, Margaret K Covey, Mary C Kapella, Charles G Alex, Edward McAuley
BACKGROUND: People with chronic obstructive pulmonary disease lead sedentary lives and could benefit from increasing their physical activity. The purpose of this study was to determine if an exercise-specific self-efficacy enhancing intervention could increase physical activity and functional performance when delivered in the context of 4 months of upper body resistance training with a 12-month follow-up. METHODS: IN THIS RANDOMIZED CONTROLLED TRIAL, SUBJECTS WERE ASSIGNED TO: exercise-specific self-efficacy enhancing intervention with upper body resistance training (SE-UBR), health education with upper body resistance training (ED-UBR), or health education with gentle chair exercises (ED-Chair)...
2014: International Journal of Chronic Obstructive Pulmonary Disease
https://www.readbyqxmd.com/read/25212999/a-neurostimulant-para-chloroamphetamine-inhibits-the-arginylation-branch-of-the-n-end-rule-pathway
#14
Yanxialei Jiang, Won Hoon Choi, Jung Hoon Lee, Dong Hoon Han, Ji Hyeon Kim, Young-Shin Chung, Se Hyun Kim, Min Jae Lee
In the arginylation branch of the N-end rule pathway, unacetylated N-terminal destabilizing residues function as essential determinants of protein degradation signals (N-degron). Here, we show that a neurostimulant, para-chloroamphetamine (PCA), specifically inhibits the Arg/N-end rule pathway, delaying the degradation of its artificial and physiological substrates, including regulators of G protein signaling 4 (RGS4), in vitro and in cultured cells. In silico computational analysis indicated that PCA strongly interacts with both UBR box and ClpS box, which bind to type 1 and type 2 N-degrons, respectively...
2014: Scientific Reports
https://www.readbyqxmd.com/read/25146930/ubr3-e3-ligase-regulates-apoptosis-by-controlling-the-activity-of-diap1-in-drosophila
#15
Q Huang, X Tang, G Wang, Y Fan, L Ray, A Bergmann, T Y Belenkaya, X Ling, D Yan, Y Lin, X Ye, W Shi, X Zhou, F Lu, J Qu, X Lin
Apoptosis has essential roles in a variety of cellular and developmental processes. Although the pathway is well studied, how the activities of individual components in the pathway are regulated is less understood. In Drosophila, a key component in apoptosis is Drosophila inhibitor of apoptosis protein 1 (DIAP1), which is required to prevent caspase activation. Here, we demonstrate that Drosophila CG42593 (ubr3), encoding the homolog of mammalian UBR3, has an essential role in regulating the apoptosis pathway...
December 2014: Cell Death and Differentiation
https://www.readbyqxmd.com/read/24925535/spontaneous-bladder-perforation-unrelated-to-trauma-or-surgery
#16
Antonio Cusano, Fernando Abarzua-Cabezas, Anoop Meraney
Urinary bladder ruptures (UBR) typically result from either blunt or penetrating trauma, or from iatrogenic surgical injuries. Patients typically present with symptoms including lower abdominal pain, haematuria, dysuria and anuria. Here, we report on a rare case of spontaneous bladder perforation. A 60-year-old, Caucasian woman initially presented with lower abdominal pain and diarrhoea, and was subsequently found to have an elevated serum creatinine level. A CT cystogram revealed a leak from the bladder. The patient consented to exploratory laparotomy and repair of the non-traumatic bladder perforation...
June 12, 2014: BMJ Case Reports
https://www.readbyqxmd.com/read/24707449/upper-body-resistance-training-and-self-efficacy-enhancement-in-copd
#17
Margaret K Covey, Edward McAuley, Mary C Kapella, Eileen G Collins, Charles G Alex, Michael L Berbaum, Janet L Larson
PURPOSE: Loss of skeletal muscle strength is commonly seen with chronic obstructive pulmonary disease (COPD). The study aim was to determine the effects of comprehensive upper-body resistance training (8 different lifts) and a self-efficacy enhancing intervention in COPD with respect to muscle strength, symptoms, functional status and exercise adherence. METHODS: This randomized trial had 3 groups: upper-body resistance training with an intervention to enhance self-efficacy (UBR + SE), upper-body resistance training and health education (UBR + HE), gentle chair exercises and health education (CE + HE)...
April 20, 2012: Journal of Pulmonary & Respiratory Medicine
https://www.readbyqxmd.com/read/24694062/an-exercise-trial-targeting-posterior-shoulder-strength-in-manual-wheelchair-users-pilot-results-and-lessons-learned
#18
Karen L Troy, Thayne A Munce, Jessica A Longworth
PURPOSE: Because wheelchair users are unable to use standard fitness equipment such as treadmills and bikes, we developed an upper body rowing ergometer (UBRE) that can be retrofitted onto a standard stationary cycle and used to perform a rowing exercise. We validated a graded exercise testing protocol utilizing the UBRE and completed a 12-week pilot intervention to compare the training effects of the UBRE to a standard arm cycle ergometer (ACE) in manual wheelchair users. METHODS: Repeat graded exercise tests were compared on the two pieces of equipment...
2015: Disability and Rehabilitation. Assistive Technology
https://www.readbyqxmd.com/read/24523286/the-role-of-spartin-and-its-novel-ubiquitin-binding-region-in-dalis-occurrence
#19
Amelia B Karlsson, Jacqueline Washington, Valentina Dimitrova, Christopher Hooper, Alexander Shekhtman, Joanna C Bakowska
Troyer syndrome is an autosomal recessive hereditary spastic paraplegia (HSP) caused by frameshift mutations in the SPG20 gene that results in a lack of expression of the truncated protein. Spartin is a multifunctional protein, yet only two conserved domains--a microtubule-interacting and trafficking domain and a plant-related senescence domain involved in cytokinesis and mitochondrial physiology, respectively--have been defined. We have shown that overexpressed spartin binds to the Ile44 hydrophobic pocket of ubiquitin, suggesting spartin might contain a ubiquitin-binding domain...
April 2014: Molecular Biology of the Cell
https://www.readbyqxmd.com/read/24237664/ubl1-of-fusarium-verticillioides-links-the-n-end-rule-pathway-to-extracellular-sensing-and-plant-pathogenesis
#20
John B Ridenour, Jonathon E Smith, Robert L Hirsch, Peter Horevaj, Hun Kim, Sandeep Sharma, Burton H Bluhm
Fusarium verticillioides produces fumonisin mycotoxins during colonization of maize. Currently, molecular mechanisms underlying responsiveness of F.verticillioides to extracellular cues during pathogenesis are poorly understood. In this study, insertional mutants were created and screened to identify genes involved in responses to extracellular starch. In one mutant, the restriction enzyme-mediated integration cassette disrupted a gene (UBL1) encoding a UBR-Box/RING domain E3 ubiquitin ligase involved in the N-end rule pathway...
July 2014: Environmental Microbiology
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