keyword
https://read.qxmd.com/read/38725870/first-insight-about-the-ability-of-specific-glycerophospholipids-to-discriminate-non-small-cell-lung-cancer-subtypes
#1
JOURNAL ARTICLE
Julia Sieminska, Katarzyna Miniewska, Robert Mroz, Ewa Sierko, Wojciech Naumnik, Joanna Kisluk, Anna Michalska-Falkowska, Joanna Reszec, Miroslaw Kozlowski, Lukasz Nowicki, Marcin Moniuszko, Adam Kretowski, Jacek Niklinski, Michal Ciborowski, Joanna Godzien
Introduction: Discrimination between adenocarcinoma (ADC) and squamous cell carcinoma (SCC) subtypes in non-small cell lung cancer (NSCLC) patients is a significant challenge in oncology. Lipidomics analysis provides a promising approach for this differentiation. Methods: In an accompanying paper, we explored oxPCs levels in a cohort of 200 NSCLC patients. In this research, we utilized liquid chromatography coupled with mass spectrometry (LC-MS) to analyze the lipidomics profile of matching tissue and plasma samples from 25 NSCLC patients, comprising 11 ADC and 14 SCC cases...
2024: Frontiers in Molecular Biosciences
https://read.qxmd.com/read/38702216/transebus-the-interpretation-of-endobronchial-ultrasound-image-using-hybrid-transformer-for-differentiating-malignant-and-benign-mediastinal-lesions
#2
JOURNAL ARTICLE
Ching-Kai Lin, Shao-Hua Wu, Yi-Wei Chua, Hung-Jen Fan, Yun-Chien Cheng
The purpose of this study is to establish a deep learning automatic assistance diagnosis system for benign and malignant classification of mediastinal lesions in endobronchial ultrasound (EBUS) images. EBUS images are in the form of video and contain multiple imaging modes. Different imaging modes and different frames can reflect the different characteristics of lesions. Compared with previous studies, the proposed model can efficiently extract and integrate the spatiotemporal relationships between different modes and does not require manual selection of representative frames...
May 2, 2024: Journal of the Formosan Medical Association
https://read.qxmd.com/read/38646640/lipid-nanoparticle-encapsulated-large-peritoneal-macrophages-migrate-to-the-lungs-via-the-systemic-circulation-in-a-model-of-clodronate-mediated-lung-resident-macrophage-depletion
#3
JOURNAL ARTICLE
Dhaval Oza, Fernando Ivich, Joshua Pace, Mikyung Yu, Mark Niedre, Mansoor Amiji
Rationale: A mature tissue resident macrophage (TRM) population residing in the peritoneal cavity has been known for its unique ability to migrate to peritoneally located injured tissues and impart wound healing properties. Here, we sought to expand on this unique ability of large peritoneal macrophages (LPMs) by investigating whether these GATA6+ LPMs could also intravasate into systemic circulation and migrate to extra-peritoneally located lungs upon ablating lung-resident alveolar macrophages (AMs) by intranasally administered clodronate liposomes in mice...
2024: Theranostics
https://read.qxmd.com/read/38632951/tmbstable-a-variant-caller-controls-performance-variation-across-heterogeneous-sequencing-samples
#4
JOURNAL ARTICLE
Shenjie Wang, Xiaoyan Zhu, Xuwen Wang, Yuqian Liu, Minchao Zhao, Zhili Chang, Xiaonan Wang, Yang Shao, Jiayin Wang
In cancer genomics, variant calling has advanced, but traditional mean accuracy evaluations are inadequate for biomarkers like tumor mutation burden, which vary significantly across samples, affecting immunotherapy patient selection and threshold settings. In this study, we introduce TMBstable, an innovative method that dynamically selects optimal variant calling strategies for specific genomic regions using a meta-learning framework, distinguishing it from traditional callers with uniform sample-wide strategies...
March 27, 2024: Briefings in Bioinformatics
https://read.qxmd.com/read/38609101/dual-molecule-targeting-hdac6-leads-to-intratumoral-cd4-cytotoxic-lymphocytes-recruitment-through-mhc-ii-upregulation-on-lung-cancer-cells
#5
JOURNAL ARTICLE
Sarah Ducellier, Mélanie Demeules, Boris Letribot, Massimiliano Gaetani, Chloé Michaudel, Harry Sokol, Abdallah Hamze, Mouad Alami, Mégane Nascimento, Sébastien Apcher
BACKGROUND: Despite the current therapeutic treatments including surgery, chemotherapy, radiotherapy and more recently immunotherapy, the mortality rate of lung cancer stays high. Regarding lung cancer, epigenetic modifications altering cell cycle, angiogenesis and programmed cancer cell death are therapeutic targets to combine with immunotherapy to improve treatment success. In a recent study, we uncovered that a molecule called QAPHA ((E)-3-(5-((2-cyanoquinolin-4-yl)(methyl)amino)-2-methoxyphenyl)-N-hydroxyacrylamide) has a dual function as both a tubulin polymerization and HDAC inhibitors...
April 11, 2024: Journal for Immunotherapy of Cancer
https://read.qxmd.com/read/38588931/a-novel-cancer-germline-gene-dazl-promotes-progression-and-cisplatin-resistance-of-non-small-cell-lung-cancer-by-upregulating-jak2-and-mcm8
#6
JOURNAL ARTICLE
Lin Zhou, Mai Nhu Uyen Le, Yan Du, Xi Chen, Miao Jin, Hu Xiang, Liang'e Xia, Jianlin Zhou, Jun He, Yichong Ning
Germline-specific genes are usually activated in cancer cells and drive cancer progression; such genes are called cancer-germline or cancer-testis genes. The RNA-binding protein DAZL is predominantly expressed in germ cells and plays a role in gametogenesis as a translational activator or repressor. However, its expression and role in non-small cell lung cancer (NSCLC) are unknown. Here, mining of RNA-sequencing data from public resources and immunohistochemical analysis of tissue microarrays showed that DAZL was expressed exclusively in testis among normal human tissues but ectopically expressed in NSCLC tissues...
April 6, 2024: Gene
https://read.qxmd.com/read/38587480/racial-disparities-in-early-stage-nsclc-treatment-a-call-for-action
#7
JOURNAL ARTICLE
Bruna Pellini, Aadel A Chaudhuri
Non-small cell lung cancer (NSCLC) is associated with a 5-year survival rate of only 28%, however, when caught at an early stage, it can be cured with surgery or stereotactic body radiotherapy (SBRT). Unfortunately, racial disparities may result in limited access to care for some patients. Liu et al. analyzed 64,999 cases of early-stage NSCLC treated between 2005 and 2017 from the Florida cancer registry and showed that Black patients had 36% lower odds of receiving curative-intent surgery compared to their White counterparts...
April 8, 2024: Cancer Epidemiology, Biomarkers & Prevention
https://read.qxmd.com/read/38560505/remodeling-the-immune-microenvironment-for-gastric-cancer-therapy-through-antagonism-of-prostaglandin-e2-receptor-4
#8
JOURNAL ARTICLE
Mengmeng Guo, Pan Hu, Jiayi Xie, Kefu Tang, Shixiu Hu, Jialiang Sun, Yundong He, Jing Li, Weiqiang Lu, Huirong Liu, Mingyao Liu, Zhengfang Yi, Shihong Peng
Gastric cancer is highly prevalent among digestive tract tumors. Due to the intricate nature of the gastric cancer immune microenvironment, there is currently no effective treatment available for advanced gastric cancer. However, there is promising potential for immunotherapy targeting the prostaglandin E2 receptor subtype 4 (EP4) in gastric cancer. In our previous study, we identified a novel small molecule EP4 receptor antagonist called YY001. Treatment with YY001 alone demonstrated a significant reduction in gastric cancer growth and inhibited tumor metastasis to the lungs in a mouse model...
July 2024: Genes & Diseases
https://read.qxmd.com/read/38544395/casc19-an-oncogenic-long-non-coding-rna-in-different-cancers
#9
JOURNAL ARTICLE
Yinxin Wu, Jie Mou, Gang Zhou, Chengfu Yuan
A 324 bp lncRNA called CASC19 is found on chromosome 8q24.21. Recent research works have revealed that CASC19 is involved in the prognosis of tumors and related to the regulation of the radiation tolerance mechanisms during tumor radiotherapy (RT). This review sheds light on the changes and roles that CASC19 plays in many tumors and diseases, such as nasopharyngeal carcinoma (NPC), cervical cancer, colorectal cancer (CRC), non-small cell lung cancer (NSCLC), clear cell renal cell carcinoma (ccRCC), gastric cancer (GC), pancreatic cancer (PC), hepatocellular carcinoma (HCC), glioma, and osteoarthritis (OA)...
March 27, 2024: Current Pharmaceutical Design
https://read.qxmd.com/read/38542889/rosmarinic-acid-rich-perilla-frutescens-extract-derived-silver-nanoparticles-a-green-synthesis-approach-for-multifunctional-biomedical-applications-including-antibacterial-antioxidant-and-anticancer-activities
#10
JOURNAL ARTICLE
Vasudeva Reddy Netala, Tianyu Hou, Siva Sankar Sana, Huizhen Li, Zhijun Zhang
This study describes a simple, cost-effective, and eco-friendly method for synthesizing silver nanoparticles using a rosmarinic acid extract from Perilla frutescens (PFRAE) as the bioreduction agent. The resulting nanoparticles, called PFRAE-AgNPs, were characterized using various analytical techniques. The UV-Vis spectrum confirmed the formation of PFRAE-AgNPs, and the FTIR spectrum indicated the participation of rosmarinic acid in their synthesis and stabilization. The XRD pattern revealed the crystal structure of PFRAE-AgNPs, and the TEM analysis showed their spherical morphology with sizes ranging between 20 and 80 nm...
March 12, 2024: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/38534371/protac-mediated-dual-degradation-of-bcl-xl-and-bcl-2-is-a-highly-effective-therapeutic-strategy-in-small-cell-lung-cancer
#11
JOURNAL ARTICLE
Sajid Khan, Lin Cao, Janet Wiegand, Peiyi Zhang, Maria Zajac-Kaye, Frederic J Kaye, Guangrong Zheng, Daohong Zhou
BCL-xL and BCL-2 are validated therapeutic targets in small-cell lung cancer (SCLC). Targeting these proteins with navitoclax (formerly ABT263, a dual BCL-xL/2 inhibitor) induces dose-limiting thrombocytopenia through on-target BCL-xL inhibition in platelets. Therefore, platelet toxicity poses a barrier in advancing the clinical translation of navitoclax. We have developed a strategy to selectively target BCL-xL in tumors, while sparing platelets, by utilizing proteolysis-targeting chimeras (PROTACs) that hijack the cellular ubiquitin proteasome system for target ubiquitination and subsequent degradation...
March 17, 2024: Cells
https://read.qxmd.com/read/38532196/digital-counting-of-tissue-cells-for-molecular-analysis-the-quantum-pipeline
#12
JOURNAL ARTICLE
Vincenzo L'Imperio, Giorgio Cazzaniga, Mauro Mannino, Davide Seminati, Francesco Mascadri, Joranda Ceku, Gabriele Casati, Francesca Bono, Catarina Eloy, Elena Guerini Rocco, Chiara Frascarelli, Matteo Fassan, Umberto Malapelle, Fabio Pagni
The estimation of tumor cellular fraction (TCF) is a crucial step in predictive molecular pathology, representing an entry adequacy criterion also in the next-generation sequencing (NGS) era. However, heterogeneity of quantification practices and inter-pathologist variability hamper the robustness of its evaluation, stressing the need for more reliable results. Here, 121 routine histological samples from non-small cell lung cancer (NSCLC) cases with complete NGS profiling were used to evaluate TCF interobserver variability among three different pathologists (pTCF), developing a computational tool (cTCF) and assessing its reliability vs ground truth (GT) tumor cellularity and potential impact on the final molecular results...
March 26, 2024: Virchows Archiv: An International Journal of Pathology
https://read.qxmd.com/read/38494473/an-epidermal-growth-factor-receptor-compound-mutation-of-l858r-with-s768i-in-advanced-non-small-cell-lung-cancer-a-case-report
#13
JOURNAL ARTICLE
Sara Boukansa, Ismail Mouhrach, Fatima El Agy, Laila Bouguenouch, Mounia Serraj, Bouchra Amara, Yassine Ouadnouni, Mohamed Smahi, Badreeddine Alami, Nawfel Mellas, Zineb Benbrahim, Hinde El Fatemi
BACKGROUND: In the current treatment landscape for non-small cell lung cancers, epidermal growth factor receptor-tyrosine kinase inhibitors have emerged as a well-established treatment option for patients with advanced or metastatic disease. This is particularly true for those with commonly occurring epidermal growth factor receptor mutations. However, the therapeutic efficacy of these agents for so-called rare epidermal growth factor receptor mutations, and in particular those characterized by a high degree of complexity, such as double mutations, remains a subject of clinical uncertainty...
March 18, 2024: Journal of Medical Case Reports
https://read.qxmd.com/read/38473302/ctdna-for-the-evaluation-and-management-of-egfr-mutant-non-small-cell-lung-cancer
#14
REVIEW
Aakash Desai, Tadana A Vázquez, Keishla M Arce, Marcelo Corassa, Philip C Mack, Jhanelle E Gray, Bruna Pellini
Circulating tumor DNA (ctDNA) offers a new paradigm in optimizing treatment strategies for epidermal growth factor receptor (EGFR) mutant non-small cell lung cancer (NSCLC). Its potential spans early-stage disease, influencing adjuvant therapy, to advanced disease, where it aids in identifying genomic markers and resistance mechanisms. This review explores the evolving landscape of utilizing liquid biopsies, specifically circulating tumor DNA (ctDNA), in the management of NSCLC with EGFR mutations. While tissue-based genomic testing remains the cornerstone for clinical decision-making, liquid biopsies offer a well-validated, guideline-recommended alternative approach...
February 26, 2024: Cancers
https://read.qxmd.com/read/38468440/the-relationship-between-weight-gain-during-chemotherapy-and-outcomes-in-patients-with-advanced-non-small-cell-lung-cancer
#15
JOURNAL ARTICLE
Eric J Roeland, Florian J Fintelmann, Fiona Hilton, Ruoyong Yang, Ed Whalen, Lisa Tarasenko, Roberto A Calle, Philip D Bonomi
BACKGROUND: This post hoc, pooled analysis examined the relationship between different weight gain categories and overall survival (OS) in patients with non-small cell lung cancer (NSCLC) receiving first-line platinum-based chemotherapy. METHODS: Data were pooled from the control arms of three phase III clinical studies (NCT00596830, NCT00254891, and NCT00254904), and the maximum weight gain in the first 3 months from treatment initiation was categorised as >0%, >2...
March 11, 2024: Journal of Cachexia, Sarcopenia and Muscle
https://read.qxmd.com/read/38464204/protac-mediated-dual-degradation-of-bcl-xl-and-bcl-2-is-a-highly-effective-therapeutic-strategy-in-small-cell-lung-cancer
#16
Sajid Khan, Lin Cao, Janet Wiegand, Peiyi Zhang, Maria Zajac-Kaye, Frederic J Kaye, Guangrong Zheng, Daohong Zhou
BCL-xL and BCL-2 are validated therapeutic targets in small-cell lung cancer (SCLC). Targeting these proteins with navitoclax (formerly ABT263, a dual BCL-xL/2 inhibitor) induces dose-limiting thrombocytopenia through on-target BCL-xL inhibition in platelets. Therefore, platelet toxicity poses a barrier in advancing the clinical translation of navitoclax. We have developed a strategy to selectively target BCL-xL in tumors, while sparing platelets, by utilizing proteolysis-targeting chimeras (PROTACs) that hijack the cellular ubiquitin proteasome system for target ubiquitination and subsequent degradation...
March 1, 2024: bioRxiv
https://read.qxmd.com/read/38449402/-the-second-web-questionnaire-survey-on-cancer-cachexia-japanese-evidence-for-patients-of-cancer-cachexia%C3%A2-j-epocc%C3%A2-challenges-in-early-detection-and-early-intervention-for-appetite-loss-and-weight-loss-during-cancer-treatment
#17
JOURNAL ARTICLE
Maimi Kiguchi, Satomi Kanemata, Koji Machii, Issei Doi, Futoshi Kinoshita
In 2019, the Cancer Cachexia Web Questionnaire Survey(J-EPOCC), conducted among cancer patients, their families and healthcare professionals in Japan showed that nearly half of patients who had experienced appetite loss or weight loss during cancer treatment had not consulted with healthcare professionals about their symptoms, and it meant that patients missed the opportunity to receive medical intervention. Since anamorelin was approved in 2021 fo"r Cancer cachexia in non- small cell lung cancer, gastric cancer, pancreatic cancer and colorectal cancer", the treatment environment for cancer cachexia has greatly changed...
February 2024: Gan to Kagaku Ryoho. Cancer & Chemotherapy
https://read.qxmd.com/read/38401173/real-world-clinical-performance-of-a-dna-based-comprehensive-genomic-profiling-assay-for-detecting-targetable-fusions-in-nonsquamous-nsclc
#18
JOURNAL ARTICLE
Philip C Mack, Rachel B Keller-Evans, Gerald Li, Katherine T Lofgren, Alexa B Schrock, Sally E Trabucco, Justin M Allen, Khaled Tolba, Geoffrey R Oxnard, Richard S P Huang
BACKGROUND: Genomic fusions are potent oncogenic drivers across cancer types and many are targetable. We demonstrate the clinical performance of DNA-based comprehensive genomic profiling (CGP) for detecting targetable fusions. MATERIALS AND METHODS: We analyzed targetable fusion genes in >450 000 tissue specimens profiled using DNA CGP (FoundationOne CDx, FoundationOne). Using a de-identified nationwide (US-based) non-small cell lung cancer (NSCLC) clinico-genomic database, we assessed outcomes in patients with nonsquamous NSCLC (NonSqNSCLC) who received matched therapy based on a fusion identified using DNA CGP...
February 24, 2024: Oncologist
https://read.qxmd.com/read/38370372/the-emerging-function-and-promise-of-trna-derived-small-rnas-in-cancer
#19
REVIEW
Na Yang, Ruijun Li, Ruai Liu, Shengjie Yang, Yi Zhao, Wei Xiong, Lu Qiu
Fragments derived from tRNA, called tRNA-derived small RNAs (tsRNAs), have attracted widespread attention in the past decade. tsRNAs are widespread in prokaryotic and eukaryotic transcriptome, which contains two main types, tRNA-derived fragments (tRFs) and tRNA-derived stress-inducing RNA (tiRNAs), derived from the precursor tRNAs or mature tRNAs. According to differences in the cleavage position, tRFs can be divided into tRF-1, tRF-2, tRF-3, tRF-5, and i-tRF, whereas tiRNAs can be divided into 5'-tiRNA and 3'-tiRNA...
2024: Journal of Cancer
https://read.qxmd.com/read/38369709/the-use-of-isoflavones-as-lung-cancer-chemoprevention-agents-and-their-implications-in-treatment-through-radio-sensitization
#20
JOURNAL ARTICLE
Efstratios Athanasiou, Savvas Papageorgiou, Marianna Foteini Dafni, Ioannis Kelesis, Maria Vasileiou, Theodora Tatsiou, Vasiliki Kouveloglou, Panagiotis Kanatas, Ioannis Stouras, Athanasios Gatsis, Vasiliki Taxiarchoula Agiassoti, Petros Nasimpian, Dimitrios Dafnoudis, Kyriaki Degaita, Georgios Ioannis Verras, Athanasios Alexiou, Marios Papadakis, Mohammad Amjad Kamal
Epidemiological trends in cancer research show that lung cancer can affect up to 1 in 15 men and 1 in 17 women. With incidence rates as high as these and significant associated mortality and morbidity, it is no wonder that lung cancer is one of the main areas of research focused on cancer. Advances in targeted treatments and specialized irradiation protocols have allowed the treatment of more advanced cases. However, as the patient numbers grow, so does the need for cancer-preventive strategies. The present narrative review focuses on soy isoflavones' role in the chemoprevention of lung cancer and their possible role in therapeutic adjuncts...
February 1, 2024: Current Medicinal Chemistry
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