keyword
https://read.qxmd.com/read/38709069/use-of-deep-learning-to-evaluate-tumor-microenvironmental-features-for-prediction-of-colon-cancer-recurrence
#1
JOURNAL ARTICLE
Frank A Sinicrope, Garth D Nelson, Bahar Saberzadeh-Ardestani, Diana I Segovia, Rondell P Graham, Christina Wu, Catherine E Hagen, Sameer Shivji, Paul Savage, Dan D Buchanan, Mark A Jenkins, Amanda I Phipps, Carol Swallow, Loic LeMarchand, Steven Gallinger, Robert C Grant, Reetesh K Pai, Stephen N Sinicrope, Dongyao Yan, Kandavel Shanmugam, James Conner, David P Cyr, Richard Kirsch, Imon Banerjee, Steve R Alberts, Qian Shi, Rish K Pai
Deep learning may detect biologically important signals embedded in tumor morphologic features that confer distinct prognoses. Tumor morphological features were quantified to enhance patient risk stratification within DNA mismatch repair (MMR) groups using deep learning. Using a quantitative segmentation algorithm (QuantCRC) that identifies 15 distinct morphological features, we analyzed 402 resected stage III colon carcinomas (191 d-MMR; 189 p-MMR) from participants in a phase III trial of FOLFOX-based adjuvant chemotherapy...
May 6, 2024: Cancer Res Commun
https://read.qxmd.com/read/38667481/unselective-measurement-of-tumor-to-stroma-proportion-in-colon-cancer-at-the-invasion-front-an-elusive-prognostic-factor-original-patient-data-and-review-of-the-literature
#2
JOURNAL ARTICLE
Zsolt Fekete, Patricia Ignat, Amelia Cristina Resiga, Nicolae Todor, Alina-Simona Muntean, Liliana Resiga, Sebastian Curcean, Gabriel Lazar, Alexandra Gherman, Dan Eniu
The tumor-to-stroma ratio is a highly debated prognostic factor in the management of several solid tumors and there is no universal agreement on its practicality. In our study, we proposed confirming or dismissing the hypothesis that a simple measurement of stroma quantity is an easy-to-use and strong prognostic tool. We have included 74 consecutive patients with colorectal cancer who underwent primary curative abdominal surgery. The tumors have been grouped into stroma-poor (stroma < 10%), medium-stroma (between 10 and 50%) and stroma-rich (over 50%)...
April 18, 2024: Diagnostics
https://read.qxmd.com/read/38613913/results-from-the-united-study-a-multicenter-study-validating-the-prognostic-effect-of-the-tumor-stroma-ratio-in-colon-cancer
#3
JOURNAL ARTICLE
M Polack, M A Smit, G W van Pelt, A G H Roodvoets, E Meershoek-Klein Kranenbarg, H Putter, H Gelderblom, A S L P Crobach, V Terpstra, G Petrushevska, G Gašljević, S Kjær-Frifeldt, E M V de Cuba, N W J Bulkmans, G R Vink, R Al Dieri, R A E M Tollenaar, J H J M van Krieken, W E Mesker
BACKGROUND: The TNM (tumor-node-metastasis) Evaluation Committee of Union for International Cancer Control (UICC) and College of American Pathologists (CAP) recommended to prospectively validate the cost-effective and robust tumor-stroma ratio (TSR) as an independent prognostic parameter, since high intratumor stromal percentages have previously predicted poor patient-related outcomes. PATIENTS AND METHODS: The 'Uniform Noting for International application of Tumor-stroma ratio as Easy Diagnostic tool' (UNITED) study enrolled patients in 27 participating centers in 12 countries worldwide...
April 12, 2024: ESMO Open
https://read.qxmd.com/read/37787084/%C3%AE-sma-cancer-associated-fibroblasts-increased-tumor-enhancement-ratio-on-contrast-enhanced-multidetector-row-computed-tomography-in-stages-i-iii-colon-cancer
#4
JOURNAL ARTICLE
Zhanhuai Wang, Shugao Han, Kailun Xu, Qi Yang, Xinhong Wang, Yang Tang, Yingkuan Shao, Yao Ye
BACKGROUND AND AIM: Our prior research revealed that the tumor enhancement ratio (TER) on triphasic abdominal contrast-enhanced MDCT (CE-MDCT) scans was a prognostic factor for patients with stages I-III colon cancer. Building upon this finding, the present study aims to investigate the proteomic changes in colon cancer patients with varying TER values. METHODS: TER was analyzed on preoperative triphasic CE-MDCT scans of 160 stages I-III colon cancer patients. The survival outcomes of those in the low-TER and high-TER groups were compared...
October 3, 2023: Journal of Gastroenterology and Hepatology
https://read.qxmd.com/read/37345012/tumor-stroma-ratio-in-colorectal-cancer-comparison-between-human-estimation-and-automated-assessment
#5
JOURNAL ARTICLE
Daniel Firmbach, Michaela Benz, Petr Kuritcyn, Volker Bruns, Corinna Lang-Schwarz, Frederik A Stuebs, Susanne Merkel, Leah-Sophie Leikauf, Anna-Lea Braunschweig, Angelika Oldenburger, Laura Gloßner, Niklas Abele, Christine Eck, Christian Matek, Arndt Hartmann, Carol I Geppert
The tumor-stroma ratio (TSR) has been repeatedly shown to be a prognostic factor for survival prediction of different cancer types. However, an objective and reliable determination of the tumor-stroma ratio remains challenging. We present an easily adaptable deep learning model for accurately segmenting tumor regions in hematoxylin and eosin (H&E)-stained whole slide images (WSIs) of colon cancer patients into five distinct classes (tumor, stroma, necrosis, mucus, and background). The tumor-stroma ratio can be determined in the presence of necrotic or mucinous areas...
May 9, 2023: Cancers
https://read.qxmd.com/read/37315399/prognostic-evaluation-of-cancer-associated-fibrosis-and-tumor-budding-in-colorectal-cancer
#6
JOURNAL ARTICLE
Adil Aziz Khan, Shaivy Malik, Sherrin Jacob, Durre Aden, Sana Ahuja, Sufian Zaheer, Sunil Ranga
Colorectal carcinoma (CRC) is the second most common cancer and third leading cause of cancer-related deaths worldwide. Although the staging system provides a standardized guidance in treatment regimens, the clinical outcome in patients with colon cancer at the same TNM stage may vary dramatically. Thus, for better predictive accuracy, further prognostic and/or predictive markers are required. Patients who underwent curative surgery for colorectal cancer in past 3 years at a tertiary care hospital were retrospectively included in this cohort study to evaluate the prognostic indicators, tumor-stroma ratio (TSR) and tumor budding (TB) on histopathological sections and correlated them with pTNM staging, histopathological grading, tumor size, and lymphovascular and perineural invasion in patients with colo-rectal cancer...
June 2, 2023: Pathology, Research and Practice
https://read.qxmd.com/read/36794267/deep-learning-based-tumor-stroma-ratio-scoring-in-colon-cancer-correlates-with-microscopic-assessment
#7
JOURNAL ARTICLE
Marloes A Smit, Francesco Ciompi, John-Melle Bokhorst, Gabi W van Pelt, Oscar G F Geessink, Hein Putter, Rob A E M Tollenaar, J Han J M van Krieken, Wilma E Mesker, Jeroen A W M van der Laak
BACKGROUND: The amount of stroma within the primary tumor is a prognostic parameter for colon cancer patients. This phenomenon can be assessed using the tumor-stroma ratio (TSR), which classifies tumors in stroma-low (≤50% stroma) and stroma-high (>50% stroma). Although the reproducibility for TSR determination is good, improvement might be expected from automation. The aim of this study was to investigate whether the scoring of the TSR in a semi- and fully automated method using deep learning algorithms is feasible...
2023: Journal of Pathology Informatics
https://read.qxmd.com/read/36649165/value-of-the-tumor-stroma-ratio-and-structural-heterogeneity-measured-by-a-novel-semi-automatic-image-analysis-technique-for-predicting-survival-in-patients-with-colon-cancer
#8
JOURNAL ARTICLE
Hiroyuki Inoue, Michihiro Kudou, Atsushi Shiozaki, Toshiyuki Kosuga, Hiroki Shimizu, Jun Kiuchi, Tomohiro Arita, Hirotaka Konishi, Shuhei Komatsu, Yoshiaki Kuriu, Yukiko Morinaga, Eiichi Konishi, Eigo Otsuji
BACKGROUND: The tumor stroma ratio and intratumor stromal heterogeneity have been identified as prognostic factors for several carcinomas. Recent advancements in image analysis technologies and their application to medicine have enable detailed analysis of clinical data beyond human cognition. OBJECTIVE: To investigate the tumor stroma ratio and intratumor stromal heterogeneity measured using a novel objective and semi-automatic method with image analysis. DESIGN: A retrospective cohort design...
December 15, 2022: Diseases of the Colon and Rectum
https://read.qxmd.com/read/36624516/tumor-secreted-exosomal-mir-141-activates-tumor-stroma-interactions-and-controls-premetastatic-niche-formation-in-ovarian-cancer-metastasis
#9
JOURNAL ARTICLE
Yulan Mo, Leanne L Leung, Celia S L Mak, Xueyu Wang, Wai-Sun Chan, Lynn M N Hui, Hermit W M Tang, Michelle K Y Siu, Rakesh Sharma, Dakang Xu, Stephen K W Tsui, Hextan Y S Ngan, Mingo M H Yung, Karen K L Chan, David W Chan
BACKGROUND: Metastatic colonization is one of the critical steps in tumor metastasis. A pre-metastatic niche is required for metastatic colonization and is determined by tumor-stroma interactions, yet the mechanistic underpinnings remain incompletely understood. METHODS: PCR-based miRNome profiling, qPCR, immunofluorescent analyses evaluated the expression of exosomal miR-141 and cell-to-cell communication. LC-MS/MS proteomic profiling and Dual-Luciferase analyses identified YAP1 as the direct target of miR-141...
January 9, 2023: Molecular Cancer
https://read.qxmd.com/read/36293565/correlation-of-immunological-and-histopathological-features-with-gene-expression-based-classifiers-in-colon-cancer-patients
#10
JOURNAL ARTICLE
Simone van de Weerd, Marloes A Smit, Jessica Roelands, Wilma E Mesker, Davide Bedognetti, Peter J K Kuppen, Hein Putter, Rob A E M Tollenaar, Jeanine M L Roodhart, Wouter Hendrickx, Jan Paul Medema, J Han J M van Krieken
The purpose of this study was to evaluate the association between four distinct histopathological features: (1) tumor infiltrating lymphocytes, (2) mucinous differentiation, (3) tumor-stroma ratio, plus (4) tumor budding and two gene expression-based classifiers-(1) consensus molecular subtypes (CMS) plus (2) colorectal cancer intrinsic subtypes (CRIS). All four histopathological features were retrospectively scored on hematoxylin and eosin sections of the most invasive part of the primary tumor in 218 stage II and III colon cancer patients from two independent cohorts (AMC-AJCC-90 and AC-ICAM)...
October 21, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/35888645/intratumoral-budding-in-pretreatment-biopsies-among-tumor-microenvironmental-components-can-predict-prognosis-and-neoadjuvant-therapy-response-in-colorectal-adenocarcinoma
#11
JOURNAL ARTICLE
Kwangil Yim, Won Mo Jang, Uiju Cho, Der Sheng Sun, Yosep Chong, Kyung Jin Seo
Background and Objectives: The prediction of the prognosis and effect of neoadjuvant therapy is vital for patients with advanced or unresectable colorectal carcinoma (CRC). Materials and Methods : We investigated several tumor microenvironment factors, such as intratumoral budding (ITB), desmoplastic reaction (DR), and Klintrup-Mäkinen (KM) inflammation grade, and the tumor-stroma ratio (TSR) in pretreatment biopsy samples (PBSs) collected from patients with advanced or unresectable CRC. A total of 85 patients with 74 rectal carcinomas and 11 colon cancers treated at our hospital were enrolled; 66 patients had curative surgery and 19 patients received palliative treatment...
July 12, 2022: Medicina
https://read.qxmd.com/read/35555361/the-influence-of-activin-on-the-tumor-microenvironment-in-colon-cancer-metastasis
#12
JOURNAL ARTICLE
Mark B Wiley, Jessica Bauer, Kunaal Mehrotra, Jasmin Zessner-Spitzenberg, Lyonell Kone, Guilin Quiao, Karla Castellanos, David N Church, Rachel S Kerr, David J Kerr, Paul Grippo, Ajay Maker, Barbara Jung
BACKGROUND AND AIMS: TGFβ and activin A are key molecules regulating tumor growth, inflammatory responses in the TME, and have differential effects which are receptor and cell specific. Identification of the source of activin A/TGFβ production and site of signaling will be critical for directing therapeutic development. Here, we employ both mouse models and human tissue samples to 1) identify pathways in which SMAD4 mutations exacerbate tumor growth and metastasis, 2) recognize how TGFβ and activin A signaling are influencing immune responses in the TME, and 3) to use the cellular source and signaling of activin A, rather than the amount, to predict patient outcomes in CRC...
May 2022: FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology
https://read.qxmd.com/read/35404299/tumor-associated-cd3-and-cd8-positive-immune-cells-in-colorectal-cancer-the-additional-prognostic-value-of-cd8-to-cd3-ratio-remains-debatable
#13
JOURNAL ARTICLE
Jussi Kasurinen, Jaana Hagström, Tuomas Kaprio, Ines Beilmann-Lehtonen, Caj Haglund, Camilla Böckelman
BACKGROUND: A large number of infiltrating CD3- and CD8-positive inflammatory cells indicates an improved survival in colorectal cancer (CRC), similar to many other cancers. OBJECTIVE: We investigated the prognostic value of different combinations of CD3- and CD8-positive immune cells in CRC patients. METHODS: The densities of CD3- and CD8-positive cells in intratumoral and stromal tissues were evaluated from 539 patients, for which we calculated a CD3 tumor-stroma index, a CD8 tumor-stroma index, and a CD3-CD8 tumor-stroma index...
2022: Tumour Biology: the Journal of the International Society for Oncodevelopmental Biology and Medicine
https://read.qxmd.com/read/35060518/a-high-density-of-pd-l1-expressing-immune-cells-is-significantly-correlated-with-favorable-disease-free-survival-in-nonmetastatic-colorectal-cancer
#14
JOURNAL ARTICLE
Ya-Ting Kuo, Chun-Kai Liao, Tse-Ching Chen, Chen-Chou Lai, Sum-Fu Chiang, Jy-Ming Chiang
The impact of immune cells (ICs) expressing various markers remains poorly understood in nonmetastatic colorectal cancer patients who have undergone colectomy. Here, we aimed to clarify the correlation between IC density and clinical parameters and survival.Programmed death protein-1 (PD-1), programmed cell death protein ligand-1 (PD-L1), clusters of differentiation (CD)-3, CD-8, and CD45RO immunostaining was performed for 421 patients using tissue microarray and automatic counting. Tumor stroma area immune density was assessed in comparison to clinical histological factors and surgical outcomes...
January 21, 2022: Medicine (Baltimore)
https://read.qxmd.com/read/35008327/the-stroma-liquid-biopsy-panel-contains-a-stromal-epithelial-gene-signature-ratio-that-is-associated-with-the-histologic-tumor-stroma-ratio-and-predicts-survival-in-colon-cancer
#15
JOURNAL ARTICLE
Cor J Ravensbergen, Matthew Kuruc, Meaghan Polack, Stijn Crobach, Hein Putter, Hans Gelderblom, Devjit Roy, Rob A E M Tollenaar, Wilma E Mesker
Liquid biopsy has emerged as a novel approach to tumor characterization, offering advantages in sample accessibility and tissue heterogeneity. However, as mutational analysis predominates, the tumor microenvironment has largely remained unacknowledged in liquid biopsy research. The current work provides an explorative transcriptomic characterization of the Stroma Liquid BiopsyTM (SLB) proteomics panel in colon carcinoma by integrating single-cell and bulk transcriptomics data from publicly available repositories...
December 29, 2021: Cancers
https://read.qxmd.com/read/34831157/combined-assessment-of-the-tumor-stroma-ratio-and-tumor-immune-cell-infiltrate-for-immune-checkpoint-inhibitor-therapy-response-prediction-in-colon-cancer
#16
JOURNAL ARTICLE
Cor J Ravensbergen, Meaghan Polack, Jessica Roelands, Stijn Crobach, Hein Putter, Hans Gelderblom, Rob A E M Tollenaar, Wilma E Mesker
The best current biomarker strategies for predicting response to immune checkpoint inhibitor (ICI) therapy fail to account for interpatient variability in response rates. The histologic tumor-stroma ratio (TSR) quantifies intratumoral stromal content and was recently found to be predictive of response to neoadjuvant therapy in multiple cancer types. In the current work, we predicted the likelihood of ICI therapy responsivity of 335 therapy-naive colon adenocarcinoma tumors from The Cancer Genome Atlas, using bioinformatics approaches...
October 28, 2021: Cells
https://read.qxmd.com/read/34638364/stroma-areactive-invasion-front-areas-sarifa-a-new-easily-to-determine-biomarker-in-colon-cancer-results-of-a-retrospective-study
#17
JOURNAL ARTICLE
Benedikt Martin, Bianca Grosser, Lana Kempkens, Silvia Miller, Svenja Bauer, Christine Dhillon, Bettina Monika Banner, Eva-Maria Brendel, Éva Sipos, Dmytro Vlasenko, Gerhard Schenkirsch, Stefan Schiele, Gernot Müller, Bruno Märkl
Many studies have used histomorphological features to more precisely predict the prognosis of patients with colon cancer, focusing on tumor budding, poorly differentiated clusters, and the tumor-stroma ratio. Here, we introduce SARIFA: Stroma AReactive Invasion Front Area(s). We defined SARIFA as the direct contact between a tumor gland/tumor cell cluster (≥5 cells) and inconspicuous surrounding adipose tissue in the invasion front. In this retrospective, single-center study, we classified 449 adipose-infiltrative adenocarcinomas (not otherwise specified) from two groups based on SARIFA and found 25% of all tumors to be SARIFA-positive...
September 29, 2021: Cancers
https://read.qxmd.com/read/34628263/semiautomatic-analysis-of-tumor-proportion-in-colon-cancer-lessons-from-a-validation-study
#18
JOURNAL ARTICLE
Silvia Miller, Svenja Bauer, Matthias Schrempf, Gerhard Schenkirsch, Andreas Probst, Bruno Märkl, Benedikt Martin
The tumor stroma ratio (TSR) is a promising histopathologic prognostic biomarker, which could allow for more accurate risk stratification and improved patient management in colorectal cancer. The purpose of our research was to validate the results of a previous study, which had suggested that not only a low but also a high tumor proportion (TP) might be an independent risk factor for occurrence of distant metastasis and worse overall survival using a semiautomatic image analysis approach with the open-source software ImageJ...
September 28, 2021: Pathology, Research and Practice
https://read.qxmd.com/read/33922988/deep-learning-prediction-of-metastasis-in-locally-advanced-colon-cancer-using-binary-histologic-tumor-images
#19
JOURNAL ARTICLE
Stefan Schiele, Tim Tobias Arndt, Benedikt Martin, Silvia Miller, Svenja Bauer, Bettina Monika Banner, Eva-Maria Brendel, Gerhard Schenkirsch, Matthias Anthuber, Ralf Huss, Bruno Märkl, Gernot Müller
In this study, we developed the Binary ImaGe Colon Metastasis classifier (BIg-CoMet), a semi-guided approach for the stratification of colon cancer patients into two risk groups for the occurrence of distant metastasis, using an InceptionResNetV2-based deep learning model trained on binary images. We enrolled 291 colon cancer patients with pT3 and pT4 adenocarcinomas and converted one cytokeratin-stained representative tumor section per case into a binary image. Image augmentation and dropout layers were incorporated to avoid overfitting...
April 25, 2021: Cancers
https://read.qxmd.com/read/33792733/association-between-obesity-and-histological-tumor-budding-in-patients-with-nonmetastatic-colon-cancer
#20
JOURNAL ARTICLE
Tong Gan, Kurt B Schaberg, Daheng He, Akila Mansour, Harit Kapoor, Chi Wang, B Mark Evers, Therese J Bocklage
Importance: Obesity is associated with increased risk of colorectal cancer (CRC) and a more aggressive disease course. Tumor budding (TB) is an important prognostic factor for CRC, but its association with obesity is unknown. Objective: To evaluate the association of TB with obesity and other prognostic factors in colon cancer. Design, Setting, and Participants: This cohort study involved a histological review of colon cancer specimens obtained during 7 years (January 2008 to December 2015) at the University of Kentucky Medical Center; data analysis was conducted from February 2020 to January 2021...
April 1, 2021: JAMA Network Open
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