keyword
https://read.qxmd.com/read/38647592/changes-in-physical-activity-and-diabetes-risk-after-cancer-diagnosis-a-nationwide-cohort-study
#21
JOURNAL ARTICLE
Wonyoung Jung, In Young Cho, Jinhyung Jung, Mi Hee Cho, Hye Yeon Koo, Yong-Moon Mark Park, Jong-Ha Baek, Kyungdo Han, Dong Wook Shin
PURPOSE: Physical activity has the potential to reduce the risk of diabetes after cancer diagnosis. However, current evidence supporting its effects is limited. This study aims to examine the associations between changes in physical activity and subsequent risk of diabetes among cancer survivors. METHODS: A total of 264,250 cancer survivors (mean age 56.7 (12.5) years, 44.2% males) without a prior history of diabetes were assessed for adherence to physical activity both before and after their diagnosis...
April 22, 2024: Journal of Cancer Survivorship: Research and Practice
https://read.qxmd.com/read/38647543/site-directed-mutagenesis-at-the-glu78-in-ec-nhaa-transporter-impacting-ion-exchange-a-biophysical-study
#22
JOURNAL ARTICLE
Anuradha Yadav, Dinesh Kumar, Manish Dwivedi
Na+ /H+ antiporters facilitate the exchange of Na+ for H+ across the cytoplasmic membrane in prokaryotic and eukaryotic cells. These transporters are crucial to maintain the homeostasis of sodium ions, consequently pH, and volume of the cells. Therefore, sodium/proton antiporters are considered promising therapeutic targets in humans. The Na+ /H+ antiporter in Escherichia coli (Ec-NhaA), a prototype of cation-proton antiporter (CPA) family, transports two protons and one sodium (or Li+ ) in opposite direction...
April 22, 2024: European Biophysics Journal: EBJ
https://read.qxmd.com/read/38647389/rewiring-photosynthesis-by-water-soluble-fullerene-derivatives-for-solar-powered-electricity-generation
#23
JOURNAL ARTICLE
Huawei Zhu, Franco M Cabrerizo, Jing Li, Tao He, Yin Li
Natural photosynthesis holds great potential to generate clean electricity from solar energy. In order to utilize this process for power generation, it is necessary to rewire photosynthetic electron transport chains (PETCs) of living photosynthetic organisms to redirect more electron flux toward an extracellular electrode. In this study, a semi-artificial rewiring strategy, which use a water-soluble fullerene derivative to capture electrons from PETCs and donate them for electrical current generation, is proposed...
April 22, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38647320/continuous-in-woods-production-of-biochar-using-a-trailer-mounted-air-curtain-burner
#24
JOURNAL ARTICLE
Deborah S Page-Dumroese, Joanne M Tirocke, Nathaniel M Anderson, James G Archuleta, Daniel W McCollum, Jeffrey Morisette, Derek N Pierson, Carlos Rodriguez-Franco
Fuel treatments and other forest restoration thinning practices aim to reduce wildfire risk while building forest resilience to drought, insects, and diseases and increasing aboveground carbon (C) sequestration. However, fuel treatments generate large amounts of unmerchantable woody biomass residues that are often burned in open piles, releasing significant quantities of greenhouse gases and particulates, and potentially damaging the soil beneath the pile. Air curtain burners offer a solution to mitigate these issues, helping to reduce smoke and particulates from burning operations, more fully burn biomass residues compared to pile burning, and eliminate the direct and intense fire contact that can harm soil beneath the slash pile...
April 5, 2024: Journal of Visualized Experiments: JoVE
https://read.qxmd.com/read/38647259/a-kinetic-model-reveals-the-critical-gating-motifs-for-donor-substrate-loading-into-actinobacillus-pleuropneumoniae-n-glycosyltransferase
#25
JOURNAL ARTICLE
Zhiqiang Hao, Qiang Guo, Wenjie Peng, Lin-Tai Da
Soluble N -glycosyltransferase from Actinobacillus pleuropneumoniae (ApNGT) catalyzes the glycosylation of asparagine residues, and represents one of the most encouraging biocatalysts for N -glycoprotein production. Since the sugar tolerance of ApNGT is restricted to limited monosaccharides ( e.g. , Glc, GlcN, Gal, Xyl, and Man), tremendous efforts are devoted to expanding the substrate scope of ApNGT via enzyme engineering. However, rational design of novel NGT variants suffers from an elusive understanding of the substrate-binding process from a dynamic point of view...
April 22, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38647084/rnase-e-searches-for-cleavage-sites-in-rna-by-linear-diffusion-direct-evidence-from-single-molecule-fret
#26
JOURNAL ARTICLE
Tithi Banerjee, Eli Rothenberg, Joel G Belasco
The ability of obstacles in cellular transcripts to protect downstream but not upstream sites en masse from attack by RNase E has prompted the hypothesis that this mRNA-degrading endonuclease may scan 5'-monophosphorylated RNA linearly for cleavage sites, starting at the 5' end. However, despite its proposed regulatory importance, the migration of RNase E on RNA has never been directly observed. We have now used single-molecule FRET to monitor the dynamics of this homotetrameric enzyme on RNA. Our findings reveal that RNase E slides along unpaired regions of RNA without consuming a molecular source of energy such as ATP and that its forward progress can be impeded when it encounters a large structural discontinuity...
April 22, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38647081/comprehensive-genomic-features-indicative-for-notch-responsiveness
#27
JOURNAL ARTICLE
Benedetto Daniele Giaimo, Tobias Friedrich, Francesca Ferrante, Marek Bartkuhn, Tilman Borggrefe
Transcription factor RBPJ is the central component in Notch signal transduction and directly forms a coactivator complex together with the Notch intracellular domain (NICD). While RBPJ protein levels remain constant in most tissues, dynamic expression of Notch target genes varies depending on the given cell-type and the Notch activity state. To elucidate dynamic RBPJ binding genome-wide, we investigated RBPJ occupancy by ChIP-Seq. Surprisingly, only a small set of the total RBPJ sites show a dynamic binding behavior in response to Notch signaling...
April 22, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38647033/can-the-rate-of-a-catalytic-turnover-be-altered-by-ligands-in-the-absence-of-direct-binding-interactions
#28
JOURNAL ARTICLE
Jacklyn N Hall, Stephen P Vicchio, A Jeremy Kropf, Massimiliano Delferro, Praveen Bollini
Second sphere coordination effects ubiquitous in enzymatic catalysis occur through direct interactions, either covalent or non-covalent, with reaction intermediates and transition states. We present herein evidence of indirect second sphere coordination effects in which ligation of water/alkanols far removed from the primary coordination sphere of the active site nevertheless alter energetic landscapes within catalytic redox cycles in the absence of direct physicochemical interactions with surface species mediating catalytic turnovers...
April 22, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38647020/impact-of-autologous-platelet-concentrates-on-the-osseointegration-of-dental-implants
#29
REVIEW
Sašo Ivanovski, Ryan S B Lee, Tulio Fernandez-Medina, Nelson Pinto, Catherine Andrade, Marc Quirynen
Osseointegration is defined as the direct deposition of bone onto biomaterial devices, most commonly composed from titanium, for the purpose of anchoring dental prostheses. The use of autologous platelet concentrates (APC) has the potential to enhance this process by modifying the interface between the host and the surface of the titanium implant. The rationale is to modify the implant surface and implant-bone interface via "biomimicry," a process whereby the deposition of the host's own proteins and extracellular matrix enhances the biocompatibility of the implant and hence accelerates the osteogenic healing process...
April 22, 2024: Periodontology 2000
https://read.qxmd.com/read/38646837/identification-and-characterization-of-putative-enhancer-regions-that-direct-il6-transcription-in-murine-macrophages
#30
JOURNAL ARTICLE
Norisuke Kano, Takeo Miki, Yurina Uehara, Daisuke Ori, Taro Kawai
Interleukin-6 (IL-6) plays a crucial role in various cellular functions, including the innate and adaptive immune responses. Dysregulated expression of IL-6 is associated with hyperinflammation and chronic inflammatory diseases. In this study, we aimed to identify the enhancer regions responsible for robust Il6 mRNA expression in murine macrophages. Through comprehensive genome-wide ChIP-seq and ATAC-seq analyses, we identified two distinct clusters, termed E1 and E2 regions, located at -144 kb to -163 kb relative to the Il6 transcription start site in lipopolysaccharide (LPS)-activated murine macrophages...
April 22, 2024: International Immunology
https://read.qxmd.com/read/38646808/luteolin-inhibits-lung-cancer-cell-migration-by-negatively-regulating-twist1-and-mmp2-through-upregulation-of-mir-106a-5p
#31
JOURNAL ARTICLE
Qiang Wang, Mengyuan Chen, Xiaofang Tang
BACKGROUND: Luteolin, a common dietary flavonoid found in plants, has been shown to have anti-cancer properties. However, its exact mechanisms of action in non-small cell lung cancer (NSCLC) are still not fully understood, particularly its role in regulating broader genomic networks and specific gene targets. In this study, we aimed to elucidate the role of microRNAs (miRNAs) in NSCLC treated with luteolin, using A549 cells as a model system. MATERIALS AND METHODS: miRNA profiling was conducted on luteolin-treated A549 cells using Exiqon microarrays, with validation of selected miRNAs by qRT-PCR...
2024: Integrative Cancer Therapies
https://read.qxmd.com/read/38646517/tailored-platinum-group-metal-spinel-oxide-catalysts-for-dynamically-enhanced-methane-oxidation
#32
JOURNAL ARTICLE
Pak Wing Chen, Debtanu Maiti, Ru-Fen Liu, Lars C Grabow, Michael P Harold
A combined experimental and molecular modeling study identifies a family of spinel oxides that in combination with PGM (platinum group metals) provide enhanced methane oxidation activity. With a reduction in greenhouse gas (GHG) emissions urgently needed, there is renewed interest in the use of natural gas vehicles (NGVs) and engines (NGEs) for transportation, commerce, and industrial applications. NGVs and NGEs emit less CO2 than their petroleum-derived counterparts but may emit uncombusted methane, an even more potent GHG...
April 17, 2024: ACS Eng Au
https://read.qxmd.com/read/38646485/citizen-science-initiatives-document-biodiversity-baselines-at-an-urban-lake
#33
JOURNAL ARTICLE
Alyssah Ahern, Daniel F Hughes
Changes to biodiversity from urbanization are occurring worldwide, and baseline data is vital to document the magnitude and direction of these alterations. We set out to document the biodiversity of an urban lake in Eastern Iowa that was devoid of baseline data prior to a renovation project that will convert the site into a major area for human recreation. Throughout the course of one year, we studied the biodiversity at Cedar Lake utilizing the citizen-science application iNaturalist coupled with semi-structured BioBlitz events, which we compared to previous opportunistic observations at the site...
2024: PeerJ
https://read.qxmd.com/read/38646284/peripheral-nerve-sheath-tumor-a-diagnostic-and-therapeutic-challenge
#34
JOURNAL ARTICLE
Deviprasad Sulli, Chandni Shankar, Shruti G Raikar
INTRODUCTION: Peripheral nerve tumors are a group of rare soft tissue tumors of neuro-ectodermal origin. Although the majority of them are benign in nature, up to 10% can be malignant. The symptoms depend on the site, size, and structures compressed by the tumor. AIM: To highlight the heterogeneity of signs and symptoms and their presentations, which has often made it difficult for the attending physician to accurately diagnose and direct the patient toward appropriate treatment...
March 2024: Curēus
https://read.qxmd.com/read/38645802/neutron-diffraction-from-a-microgravity-grown-crystal-reveals-the-active-site-hydrogens-of-the-internal-aldimine-form-of-tryptophan-synthase
#35
JOURNAL ARTICLE
Victoria N Drago, Juliette M Devos, Matthew P Blakeley, V Trevor Forsyth, Jerry M Parks, Andrey Kovalevsky, Timothy C Mueser
Pyridoxal 5'-phosphate (PLP), the biologically active form of vitamin B6 , is an essential cofactor in many biosynthetic pathways. The emergence of PLP-dependent enzymes as drug targets and biocatalysts, such as tryptophan synthase (TS), has underlined the demand to understand PLP-dependent catalysis and reaction specificity. The ability of neutron diffraction to resolve the positions of hydrogen atoms makes it an ideal technique to understand how the electrostatic environment and selective protonation of PLP regulates PLP-dependent activities...
February 21, 2024: Cell reports. Physical science
https://read.qxmd.com/read/38645610/enhancing-research-support-services-in-health-organizations-by-implementing-a-research-concierge-desk-a-case-study
#36
REVIEW
Areej AlFattani, Abeer AlFirm, Norah AlBedah, Haifa AlDakhil, Elaf Al Muaythir, Leena Zeyad, Yasmin AlTwaijri
Health organizations with teaching and research responsibilities face the need to establish a comprehensive system that addresses the processes and challenges associated with research activities; a system that assists local institutes in becoming research-active by identifying gaps and providing actionable recommendations. The involvement of epidemiologists, biostatisticians, and data scientists is paramount in offering technical and scientific support to health researchers. In our organization, research support services, such as technical, statistical, logistical, and scientific assistance, have been provided to researchers for the past 20 years under the name of "Data Clinic Service"...
2024: Frontiers in Research Metrics and Analytics
https://read.qxmd.com/read/38645340/synthesis-of-two-dimensional-zeolite-nanosheets-applied-to-the-catalytic-cracking-of-a-waste-cooking-oil-model-compound-to-produce-light-olefins
#37
JOURNAL ARTICLE
Wenbo Luo, Haoyu Liu, Hong Yuan, Hao Liu
Hierarchical zeolites can provide multidimensional spatial networks and, therefore, have significant potential as catalysts for the cracking of biomass to generate light olefins. The present work synthesized the diquaternary ammonium-type surfactant [C18 H37 -N+ (CH3 )2 -(CH2 )6 -N+ (CH3 )2 -C6 H13 ]Br2 , incorporating hydrophobic 18-carbon alkyl groups for usage as a structure-directing agent. This compound was subsequently used to prepare nanosheets of a hierarchical ZSM-5 two-dimensional zeolite (HNZSM-5) through a one-pot hydrothermal method...
April 16, 2024: ACS Omega
https://read.qxmd.com/read/38645307/conformational-investigation-of-the-asymmetric-periplasmic-domains-of-e-coli-lptb-2-fgc-using-sdsl-cw-epr-spectroscopy
#38
JOURNAL ARTICLE
Nicholas P Cina, Candice S Klug
The majority of pathogenic Gram-negative bacteria benefit from intrinsic antibiotic resistance, attributed primarily to the lipopolysaccharide (LPS) coating of the bacterial envelope. To effectively coat the bacterial cell envelope, LPS is transported from the inner membrane by the LPS transport (Lpt) system, which comprises seven distinct Lpt proteins, LptA-G, that form a stable protein bridge spanning the periplasm to connect the inner and outer membranes. The driving force of this process, LptB2 FG, is an asymmetric ATP binding cassette (ABC) transporter with a novel architecture and function that ejects LPS from the inner membrane and facilitates transfer to the periplasmic bridge...
March 2024: Applied Magnetic Resonance
https://read.qxmd.com/read/38645096/analysis-of-endogenous-notch1-from-pofut1-s162l-patient-fibroblasts-reveals-the-importance-of-the-o-fucose-modification-on-egf12-in-human-development
#39
Kenjiroo Matsumoto, Kelvin B Luther, Robert S Haltiwanger
NOTCH1 (N1) is a transmembrane receptor interacting with membrane-tethered ligands on opposing cells that mediate the direct cell-cell interaction necessary for many cell fate decisions. Protein O -fucosyltransferase 1 (POFUT1) adds O -fucose to Epidermal Growth Factor (EGF)-like repeats in the NOTCH1 extracellular domain, which is required for trafficking and signaling activation. We previously showed that POFUT1 S162L caused a 90% loss of POFUT1 activity and global developmental defects in a patient; however, the mechanism by which POFUT1 contributes to these symptoms is still unclear...
April 9, 2024: bioRxiv
https://read.qxmd.com/read/38645048/trip12-governs-dna-polymerase-%C3%AE-involvement-in-dna-damage-response-and-repair
#40
Burcu Inanc, Qingming Fang, Joel F Andrews, Xuemei Zeng, Jennifer Clark, Jianfeng Li, Nupur B Dey, Md Ibrahim, Peter Sykora, Zhongxun Yu, Andrea Braganza, Marcel Verheij, Jos Jonkers, Nathan A Yates, Conchita Vens, Robert W Sobol
The multitude of DNA lesion types, and the nuclear dynamic context in which they occur, present a challenge for genome integrity maintenance as this requires the engagement of different DNA repair pathways. Specific 'repair controllers' that facilitate DNA repair pathway crosstalk between double strand break (DSB) repair and base excision repair (BER), and regulate BER protein trafficking at lesion sites, have yet to be identified. We find that DNA polymerase β (Polβ), crucial for BER, is ubiquitylated in a BER complex-dependent manner by TRIP12, an E3 ligase that partners with UBR5 and restrains DSB repair signaling...
April 10, 2024: bioRxiv
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