keyword
https://read.qxmd.com/read/32719670/characterization-of-pts14-an-incf2-a1-b1-plasmid-carrying-tet-m-in-a-salmonella-enterica-isolate
#21
JOURNAL ARTICLE
Ying-Ying Liu, Xiao-Kang Liu, Xiao-Die Cui, Min Chen, Shuai-Hua Li, Dan-Dan He, Jian-Hua Liu, Li Yuan, Gong-Zheng Hu, Yu-Shan Pan
The objective of this study was to explore the genetic and biological features of the tet (M)-harboring plasmid pTS14 in Salmonella enterica strain S14 isolated from a chicken fecal sample. Plasmid pTS14 was identified by conjugation, S1-pulsed-field gel electrophoresis (PFGE), Southern hybridization, and plasmid sequencing. The biological characteristics of pTS14 were assessed via stability, growth kinetics, and starvation survival experiments. Strain S14, belonging to ST3007, harbored a 119-kb tet (M)-bearing IncF2:A1:B1 conjugative plasmid pTS14...
2020: Frontiers in Microbiology
https://read.qxmd.com/read/32528162/characterization-of-the-inchi-2-plasmid-ptw4-harboring-tet-m-from-an-isolate-of-escherichia-coli-st162
#22
JOURNAL ARTICLE
Ying-Ying Liu, Ya-Wei Sun, Hua-Run Sun, Xing-Wei Luo, Dan-Dan He, Hua Wu, Li Yuan, Yu-Shan Pan, Gong-Zheng Hu, Jian-Hua Liu
To investigate the genetic features and biological costs of the plasmid pTW4 harboring tet(M) in an isolate of Escherichia coli ST162 from a duck. The complete nucleotide sequence of plasmid pTW4 was determined. The characteristics of plasmid pTW4 in E. coli were investigated by stability and direct competition assays. pTW4 is an IncHI2 -type plasmid that contained the resistant genes tet(M), floR, strAB, sul2, rmtB, and blaCMY-2 . Tet(M) is located in the composite transposon Tn6539 within the multidrug resistant (MDR) region on this plasmid...
June 12, 2020: Journal of Antibiotics
https://read.qxmd.com/read/32385615/highly-transferable-paqu-related-plasmids-encoding-multidrug-resistance-are-widespread-in-the-human-and-fish-pathogen-photobacterium-damselae-subsp-damselae-in-aquaculture-areas-in-the-black-sea
#23
JOURNAL ARTICLE
Ana Vences, Saqr Abushattal, Xosé M Matanza, Javier Dubert, Ecren Uzun, Hamdi Ogut, Carlos R Osorio
The marine bacterium Photobacterium damselae subsp. damselae is a pathogen that causes disease in diverse marine animals, and is also a serious opportunistic human pathogen that can cause fatal infections. Strains of this pathogen isolated from diseased European sea bass in aquaculture facilities in the Turkish coast of the Black Sea were found to exhibit reduced sensitivity to multiple antimicrobials. Selected representative strains were subjected to complete genome sequencing and plasmid characterization...
May 8, 2020: Microbial Ecology
https://read.qxmd.com/read/32306238/predicting-intense-levels-of-child-anxiety-during-anesthesia-induction-at-hospital-arrival
#24
JOURNAL ARTICLE
Robin Eijlers, Lonneke M Staals, Jeroen S Legerstee, Johan M Berghmans, Elske M Strabbing, Marc P van der Schroeff, René M H Wijnen, Laura S Kind, Manon H J Hillegers, Bram Dierckx, Elisabeth M W J Utens
In children, intense levels of anxiety during anesthetic induction are associated with a higher risk of pain, poor recovery, and emergence delirium. Therefore, it is important to identify these high-risk children at hospital arrival. The current study examined internalizing behavior (Child Behavior Checklist, CBCL) and state anxiety measures (modified Yale Preoperative Anxiety Scale, mYPAS, and State Trait Anxiety Inventory for Children, STAIC) at hospital arrival as predictors of anxiety during induction of anesthesia...
April 18, 2020: Journal of Clinical Psychology in Medical Settings
https://read.qxmd.com/read/31602660/prevalence-of-virulence-and-extended-spectrum-%C3%AE-lactamase-esbl-genes-harboring-vibrio-spp-isolated-from-cockles-tegillarca-granosa-marketed-in-korea
#25
JOURNAL ARTICLE
P S Dahanayake, Sabrina Hossain, M V K S Wickramanayake, Gang-Joon Heo
The present study aimed to investigate the incidence, virulence and antibiotic properties in Vibrio spp. isolated from cockles (Tegillarca granosa) marketed in Korea. A total of 32 Vibrio spp. isolates including V. parahaemolyticus (n=4), V. alginolyticus (n=11), V. diabolicus (n=14), and V. harveyi (n=3) were detected using gyrB sequencing. The phenotypic pathogenicity revealed DNase, amylase and phospholipase activities were 100%, while lipase, slime production, gelatinase, caseinase were detected in 72, 88, 88, 81% of the isolates, respectively...
October 10, 2019: Letters in Applied Microbiology
https://read.qxmd.com/read/31555253/altered-integrative-and-conjugative-elements-ices-in-recent-vibrio-cholerae-o1-isolated-from-cholera-cases-kolkata-india
#26
JOURNAL ARTICLE
Anirban Sarkar, Daichi Morita, Amit Ghosh, Goutam Chowdhury, Asish K Mukhopadhyay, Keinosuke Okamoto, Thandavarayan Ramamurthy
The self-transferring integrative and conjugative elements (ICEs) are large genomic segments carrying several bacterial adaptive functions including antimicrobial resistance (AMR). SXT/R391 family is one of the ICEs extensively studied in cholera-causing pathogen Vibrio cholerae . The genetic characteristics of ICE-SXT/R391 in V. cholerae are dynamic and region-specific. These ICEs in V. cholerae are strongly correlated with resistance to several antibiotics such as tetracycline, streptomycin and trimethoprim-sulfamethoxazole...
2019: Frontiers in Microbiology
https://read.qxmd.com/read/31532540/collagen-type-x-is-essential-for-successful-mesenchymal-stem-cell-mediated-cartilage-formation-and-subsequent-endochondral-ossification
#27
JOURNAL ARTICLE
C A Knuth, E Andres Sastre, N B Fahy, J Witte-Bouma, Y Ridwan, E M Strabbing, M J Koudstaal, J van de Peppel, E B Wolvius, R Narcisi, E Farrell
n tissue engineering, endochondral ossification (EO) is often replicated by chondrogenically differentiating mesenchymal stromal cells (MSCs) in vitro and achieving bone formation through in vivo implantation. The resulting marrow-containing bone constructs are promising as a treatment for bone defects. However, limited bone formation capacity has prevented them from reaching their full potential. This is further complicated since it is not fully understood how this bone formation is achieved. Acellular grafts derived from chondrogenically differentiated MSCs can initiate bone formation; however, which component within these decellularised matrices contribute to bone formation has yet to be determined...
September 18, 2019: European Cells & Materials
https://read.qxmd.com/read/31477035/intracranial-actinomycosis-of-odontogenic-origin-masquerading-as-auto-immune-orbital-myositis-a-fatal-case-and-review-of-the-literature
#28
REVIEW
G J Hötte, M J Koudstaal, R M Verdijk, M J Titulaer, J F H M Claes, E M Strabbing, A van der Lugt, D Paridaens
BACKGROUND: Actinomycetes can rarely cause intracranial infection and may cause a variety of complications. We describe a fatal case of intracranial and intra-orbital actinomycosis of odontogenic origin with a unique presentation and route of dissemination. Also, we provide a review of the current literature. CASE PRESENTATION: A 58-year-old man presented with diplopia and progressive pain behind his left eye. Six weeks earlier he had undergone a dental extraction, followed by clindamycin treatment for a presumed maxillary infection...
September 2, 2019: BMC Infectious Diseases
https://read.qxmd.com/read/31356373/virtual-reality-exposure-before-elective-day-care-surgery-to-reduce-anxiety-and-pain-in-children-a-randomised-controlled-trial
#29
RANDOMIZED CONTROLLED TRIAL
Robin Eijlers, Bram Dierckx, Lonneke M Staals, Johan M Berghmans, Marc P van der Schroeff, Elske M Strabbing, René M H Wijnen, Manon H J Hillegers, Jeroen S Legerstee, Elisabeth M W J Utens
BACKGROUND: Pre-operative anxiety in children is very common and is associated with adverse outcomes. OBJECTIVE: The aim of this study was to investigate if virtual reality exposure (VRE) as a preparation tool for elective day care surgery in children is associated with lower levels of anxiety, pain and emergence delirium compared with a control group receiving care as usual (CAU). DESIGN: A randomised controlled single-blind trial. SETTING: A single university children's hospital in the Netherlands from March 2017 to October 2018...
October 2019: European Journal of Anaesthesiology
https://read.qxmd.com/read/31057528/antimicrobial-resistance-genes-cassettes-and-plasmids-present-in-salmonella-enterica-associated-with-united-states-food-animals
#30
JOURNAL ARTICLE
Elizabeth A McMillan, Sushim K Gupta, Laura E Williams, Thomas Jové, Lari M Hiott, Tiffanie A Woodley, John B Barrett, Charlene R Jackson, Jamie L Wasilenko, Mustafa Simmons, Glenn E Tillman, Michael McClelland, Jonathan G Frye
The ability of antimicrobial resistance (AR) to transfer, on mobile genetic elements (MGEs) between bacteria, can cause the rapid establishment of multidrug resistance (MDR) in bacteria from animals, thus creating a foodborne risk to human health. To investigate MDR and its association with plasmids in Salmonella enterica , whole genome sequence (WGS) analysis was performed on 193 S. enterica isolated from sources associated with United States food animals between 1998 and 2011; 119 were resistant to at least one antibiotic tested...
2019: Frontiers in Microbiology
https://read.qxmd.com/read/30927434/characterization-of-the-stability-and-dynamics-of-tn6330-in-an-escherichia-coli-strain-by-nanopore-long-reads
#31
JOURNAL ARTICLE
Ruichao Li, Kaichao Chen, Edward Wai-Chi Chan, Sheng Chen
BACKGROUND: The mcr-1 gene has been widely reported in both bacterial chromosomes and plasmids, while its stability in these genetic materials is not well understood. OBJECTIVES: Our aim was to characterize the stability and dynamics of Tn6330 elements in both a plasmid and the chromosome in a single bacterial population. METHODS: Plasmid-borne and chromosomal Tn6330 were characterized by PCR, conjugation, S1-PFGE, stability assay, single-molecule long-read sequencing and bioinformatics analysis...
March 29, 2019: Journal of Antimicrobial Chemotherapy
https://read.qxmd.com/read/30405558/evidence-of-illegitimate-recombination-between-two-pasteurellaceae-plasmids-resulting-in-a-novel-multi-resistance-replicon-pm3362mdr-in-actinobacillus-pleuropneumoniae
#32
JOURNAL ARTICLE
Yinghui Li, Giarlã Cunha da Silva, Yanwen Li, Ciro C Rossi, Roberto Fernandez Crespo, Susanna M Williamson, Paul R Langford, Denise Mara Soares Bazzolli, Janine T Bossé
Evidence of plasmids carrying the tetracycline resistance gene, tet (B), was found in the previously reported whole genome sequences of 14 United Kingdom, and 4 Brazilian, isolates of Actinobacillus pleuropneumoniae. Isolation and sequencing of selected plasmids, combined with comparative sequence analysis, indicated that the four Brazilian isolates all harbor plasmids that are nearly identical to pB1001, a plasmid previously found in Pasteurella multocida isolates from Spain. Of the United Kingdom isolates, 13/14 harbor plasmids that are (almost) identical to pTetHS016 from Haemophilus parasuis ...
2018: Frontiers in Microbiology
https://read.qxmd.com/read/30336162/is26-mediated-antimicrobial-resistance-gene-shuffling-from-the-chromosome-to-a-mosaic-conjugative-fii-plasmid
#33
JOURNAL ARTICLE
M Oliva, R Monno, P Addabbo, G Pesole, M Scrascia, C Calia, A M Dionisi, M Chiara, D S Horner, C Manzari, C Pazzani
In the present study we report the identification of a sul3-associated class 1 integron containing the dfrA12-orfF-aadA2-cmlA1-aadA1-qacH array embedded in a Tn21-derived element that is part of a conjugative FII plasmid named pST1007-1A. The plasmid was identified in the Salmonella Typhimurium strain ST1007, a member of a clinically relevant clonal MDR lineage diffuse in Italy. ST1007 exhibited resistance to ampicillin, chloramphenicol, streptomycin, sulphamethoxazole, tetracycline and trimethoprim encoded by blaTEM-1 , cmlA1, (aadA1, aadA2, strAB), (sul2, sul3), tet(B) and dfrA12 genes, respectively...
October 16, 2018: Plasmid
https://read.qxmd.com/read/30328753/molecular-characterization-of-salmonella-enterica-serovar-enteritidis-genetic-basis-of-antimicrobial-drug-resistance-and-plasmid-diversity-in-ampicillin-resistant-isolates
#34
JOURNAL ARTICLE
Vanesa García, Xenia Vázquez, Margarita Bances, Laura Herrera-León, Silvia Herrera-León, M Rosario Rodicio
Salmonella enterica serovar Enteritidis is the most common cause of human salmonellosis worldwide. In this study, all clinical isolates of Salmonella Enteritidis recovered between January 2008 and June 2014 in a Spanish region (491) were screened for antimicrobial drug resistance and the phage type (PT) was determined for a significant number (265). PT1, PT14b, PT56, PT6, PT4, and PT8 were the predominant PTs, accounting together for 82% of the isolates. A total of 38.3% of the isolates were susceptible to all antimicrobials tested, 46...
October 17, 2018: Microbial Drug Resistance: MDR: Mechanisms, Epidemiology, and Disease
https://read.qxmd.com/read/30170962/survey-on-pathogenic-escherichia-coli-and-salmonella-spp-in-captive-cockatiels-nymphicus-hollandicus
#35
JOURNAL ARTICLE
Patricia Silveira de Pontes, Selene Dall' Acqua Coutinho, Renata de Oliveira Iovine, Marcos Paulo Vieira Cunha, Terezinha Knöbl, Vania Maria de Carvalho
We surveyed healthy captive cockatiels (Nymphicus hollandicus) for Escherichia coli and Salmonella spp. Cloacal swabs were collected from 94 cockatiels kept in commercial breeders, private residencies and pet shops in the cities of São Paulo/SP and Niterói/RJ (Brazil). Three strains of E. coli from each individual were tested for the presence of ExPEC-, APEC- and DEC-related genes. We evaluated the blaTEM , blaSHV , blaOXA , blaCMY , blaCTX-M , tetA, tetB, aadA, aphA, strAB, sul1, sul2, sul3, qnrA, qnrD, qnrB, qnrS, oqxAB, aac (6)'-Ib-cr, qepA resistance genes and markers for plasmid incompatibility groups...
August 20, 2018: Brazilian Journal of Microbiology: [publication of the Brazilian Society for Microbiology]
https://read.qxmd.com/read/29966679/genomic-analysis-of-multidrug-resistant-escherichia-coli-st58-causing-urosepsis
#36
JOURNAL ARTICLE
Jessica McKinnon, Piklu Roy Chowdhury, Steven P Djordjevic
Sequence type 58 (ST58) phylogroup B1 Escherichia coli have been isolated from a wide variety of mammalian and avian hosts but are not noted for their ability to cause serious disease in humans or animals. Here we determined the genome sequences of two multidrug-resistant E. coli ST58 strains from urine and blood of one patient using a combination of Illumina and Single Molecule, Real-Time (SMRT) sequencing. Both ST58 strains were clonal and were characterised as serotype O8:H25, phylogroup B1 and carried a complex resistance locus/loci (CRL) that featured an atypical class 1 integron with a dfrA5 (trimethoprim resistance) gene cassette followed by only 24 bp of the 3'-CS...
September 2018: International Journal of Antimicrobial Agents
https://read.qxmd.com/read/29277529/comparative-genomics-of-rmtb-carrying-inci1-st136-plasmids-in-avian-escherichia-coli-isolates-from-chickens-in-china
#37
JOURNAL ARTICLE
Li Yuan, Jian-Hua Liu, Xiang-Dang Du, Zhi-Yong Zong, Min Chen, Gong-Zheng Hu, Yu-Shan Pan
Eight rmtB-carrying avian Escherichia coli strains from a farm in China were characterised in our previous study, but little is known about the backbones and entire multiresistance regions (MRRs) of these plasmids. Here, three rmtB-carrying IncI1 ST136 plasmids were analysed by whole-plasmid sequencing and were compared. These plasmids were composed of an 83 470-bp IncI1 backbone carrying genes responsible for plasmid replication, transfer, maintenance and stability functions, as well as a 17 330-bp MRR for pEC006 and pEC007, and a 34 626-bp MRR for pEC008...
April 2018: International Journal of Antimicrobial Agents
https://read.qxmd.com/read/29029160/characterization-of-the-actinobacillus-pleuropneumoniae-sxt-related-integrative-and-conjugative-element-iceapl2-and-analysis-of-the-encoded-flor-protein-hydrophobic-residues-in-transmembrane-domains-contribute-dynamically-to-florfenicol-and-chloramphenicol
#38
JOURNAL ARTICLE
Yinghui Li, Yanwen Li, Roberto Fernandez Crespo, Leon G Leanse, Paul R Langford, Janine T Bossé
Objectives: To characterize ICEApl2, an SXT-related integrative and conjugative element (ICE) found in a clinical isolate of the porcine pathogen Actinobacillus pleuropneumoniae, and analyse the functional nature of the encoded FloR. Methods: ICEApl2 was identified in the genome of A. pleuropneumoniae MIDG3553. Functional analysis was done using conjugal transfer experiments. MIDG3553 was tested for susceptibility to the antimicrobials for which resistance genes are present in ICEApl2...
January 1, 2018: Journal of Antimicrobial Chemotherapy
https://read.qxmd.com/read/28922058/evolution-of-regions-containing-antibiotic-resistance-genes-in-fii-2-fib-1-colv-colla-virulence-plasmids
#39
JOURNAL ARTICLE
Robert A Moran, Ruth M Hall
Three ColV virulence plasmids carrying antibiotic resistance genes were assembled from draft genome sequences of commensal ST95, ST131, and ST2705 Escherichia coli isolates from healthy Australians. Plasmids pCERC4, pCERC5, and pCERC9 include almost identical backbones containing FII-2 and FIB-1 replicons and the conserved ColV virulence region with an additional ColIa determinant. Only pCERC5 includes a complete, uninterrupted F-like transfer region and was able to conjugate. pCERC5 and pCERC9 contain Tn1721, carrying the tet(A) tetracycline resistance determinant in the same location, with Tn2 (blaTEM ; ampicillin resistance) interrupting the Tn1721 in pCERC5...
May 2018: Microbial Drug Resistance: MDR: Mechanisms, Epidemiology, and Disease
https://read.qxmd.com/read/28725038/genomic-characterization-of-novel-incfii-type-multidrug-resistant-plasmids-p0716-kpc-and-p12181-kpc-from-klebsiella-pneumoniae
#40
JOURNAL ARTICLE
Jiao Feng, Zhe Yin, Qiangyuan Zhao, Yachao Zhao, Defu Zhang, Xiaoyuan Jiang, Weili Wu, Weijun Chen, Hui Wang, Yajun Song, Yigang Tong, Jinglin Wang, Yanjun Li, Dongsheng Zhou
This study aimed to genetically characterize two fully-sequenced novel IncFII-type multidrug resistant (MDR) plasmids, p0716-KPC and p12181-KPC, recovered from two different clinical Klebsiella pneumoniae isolates. p0716-KPC and p12181-KPC had a very similar genomic content. The backbones of p0716-KPC/p12181-KPC contained two different replicons (belonging to a novel IncFII subtype and the Rep_3 family), the IncFIIK and IncFIIY maintenance regions, and conjugal transfer gene sets from IncFIIK-type plasmids and unknown origins...
July 19, 2017: Scientific Reports
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