keyword
https://read.qxmd.com/read/38647861/methods-for-generating-self-organizing-human-patterned-heart-organoids-using-pluripotent-stem-cells
#21
JOURNAL ARTICLE
Brett Volmert, Aitor Aguirre
Organoids derived from pluripotent stem cells exhibit notable similarities to organ development in vitro. Nonetheless, cardiac organoids generated to date possess immature phenotypes and are unable to model the full spectrum of heart development and disease. Here, we describe the developmental maturation of human heart organoids by controlled exposure to metabolic and hormonal factors over a 10-day period, mirroring key stages of human cardiac development and resulting in significant molecular, cellular, morphological, and functional changes...
April 23, 2024: Methods in Molecular Biology
https://read.qxmd.com/read/38647859/comparison-of-three-viral-nucleic-acid-preamplification-pipelines-for-sewage-viral-metagenomics
#22
JOURNAL ARTICLE
Xavier Fernandez-Cassi, Tamar Kohn
Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its effective use in disease surveillance. In this study, we investigated the performance of three different preamplification pipelines (specific to RNA viruses, DNA viruses or both) for viral genome sequencing using spiked-in Phosphate Buffered Saline and sewage samples containing known concentrations of viruses. We found that compared to the pipeline targeting all genome types, the RNA pipeline performed better in detecting RNA viruses in both spiked and unspiked sewage samples, allowing the detection of various mammalian viruses including members from the Reoviridae, Picornaviridae, Astroviridae and Caliciviridae...
April 22, 2024: Food and Environmental Virology
https://read.qxmd.com/read/38647854/recent-advances-in-the-biosynthesis-and-industrial-biotechnology-of-gamma-amino-butyric-acid
#23
REVIEW
Ripon Baroi Milon, Pengchen Hu, Xueqiong Zhang, Xuechao Hu, Lujing Ren
GABA (Gamma-aminobutyric acid), a crucial neurotransmitter in the central nervous system, has gained significant attention in recent years due to its extensive benefits for human health. The review focused on recent advances in the biosynthesis and production of GABA. To begin with, the investigation evaluates GABA-producing strains and metabolic pathways, focusing on microbial sources such as Lactic Acid Bacteria, Escherichia coli, and Corynebacterium glutamicum. The metabolic pathways of GABA are elaborated upon, including the GABA shunt and critical enzymes involved in its synthesis...
March 16, 2024: Bioresources and Bioprocessing
https://read.qxmd.com/read/38647846/cytotoxicity-of-subcritical-water-extracts-obtained-from-byproducts-generated-at-commercial-pecan-shelling-operations-on-cancer-cells
#24
JOURNAL ARTICLE
Canan Sevimli Gur, Nurhan Turgut Dunford, Zinar Pinar Gumus
This study examined potential of the extracts obtained from the byproducts generated at commercial pecan nut-shelling operations in cancer treatment. The subcritical water extracts obtained from two varieties, Native and Pawnee, were analyzed for their phenolic contents and compositions. Effects of the extracts on viability and IC50 of the human cell lines representing a broad range of cancer types, cervical, lung, skin, breast, colon and prostate cancers, were investigated. Although the effect of the temperature on the phenolic contents and compositions of the extracts was not statistically significant, the influence of the variety was extensive...
July 28, 2023: Bioresources and Bioprocessing
https://read.qxmd.com/read/38647714/molecularly-imprinted-polymer-photoelectrochemical-sensor-for-the-detection-of-triazophos-in-water-based-on-carbon-quantum-dot-modified-titanium-dioxide
#25
JOURNAL ARTICLE
Yinan Zeng, Min Zhang, Lei Ding, Shilei Xie, Peng Liu, Dong Xie, Shoushan Wang, Faliang Cheng
Widely used organophosphorus pesticide triazophos (TAP) can easily cumulate in aquatic system due to its high stability chemically and photochemically and thus posing significant threat to aquatic creatures and humans' health. Urging demand for rapid determining TAP in water has risen. Photoelectrochemical (PEC) sensing turns out to be a good candidate for its simplicity in fabrication and swiftness in detection. Nevertheless, traditional PEC sensors often lack selectivity as their signal generation primarily relies on the oxidation of organic compounds in the electrolyte by photo-induced holes...
April 22, 2024: Mikrochimica Acta
https://read.qxmd.com/read/38647701/role-of-the-medial-agranular-cortex-in-unilateral-spatial-neglect
#26
JOURNAL ARTICLE
Daisuke Ishii, Hironobu Osaki, Arito Yozu, Tatsuya Yamamoto, Satoshi Yamamoto, Mariko Miyata, Yutaka Kohno
Unilateral spatial neglect (USN) results from impaired attentional networks and can affect various sensory modalities, such as visual and somatosensory. The rodent medial agranular cortex (AGm), located in the medial part of the forebrain from rostral to caudal direction, is considered a region associated with spatial attention. The AGm selectively receives multisensory input with the rostral AGm receiving somatosensory input and caudal part receiving visual input. Our previous study showed slower recovery from neglect with anterior AGm lesion using the somatosensory neglect assessment...
April 22, 2024: Experimental Brain Research. Experimentelle Hirnforschung. Expérimentation Cérébrale
https://read.qxmd.com/read/38647700/de-novo-drug-design-as-gpt-language-modeling-large-chemistry-models-with-supervised-and-reinforcement-learning
#27
JOURNAL ARTICLE
Gavin Ye
In recent years, generative machine learning algorithms have been successful in designing innovative drug-like molecules. SMILES is a sequence-like language used in most effective drug design models. Due to data's sequential structure, models such as recurrent neural networks and transformers can design pharmacological compounds with optimized efficacy. Large language models have advanced recently, but their implications on drug design have not yet been explored. Although one study successfully pre-trained a large chemistry model (LCM), its application to specific tasks in drug discovery is unknown...
April 22, 2024: Journal of Computer-aided Molecular Design
https://read.qxmd.com/read/38647693/etching-of-ag-nanoparticles-triggered-bidirectional-regulation-for-electrochemiluminescence-ratiometric-immunoassay
#28
JOURNAL ARTICLE
Yu-Ling Wang, Xiang-Mei Liu, Shu-Wei Ren, Jun-Tao Cao, Yan-Ming Liu
A highly efficient ratiometric electrochemiluminescence (ECL) immunoassay was explored by bidirectionally regulating the ECL intensity of two luminophors. The immunoassay was conducted in a split-type mode consisting of an ECL detection procedure and a sandwich immunoreaction. The ECL detection was executed using a dual-disk glassy carbon electrode modified with two potential-resolved luminophors (g-C3 N4 -Ag and Ru-MOF-Ag nanocomposites), and the sandwich immunoreaction using glucose oxidase (GOx)-modified SiO2 nanospheres as labels was carried out in a 96-well plate...
April 22, 2024: Analytical and Bioanalytical Chemistry
https://read.qxmd.com/read/38647692/a-dual-mode-platform-for-the-rapid-detection-of-escherichia-coli-o157-h7-based-on-crispr-cas12a-and-rpa
#29
JOURNAL ARTICLE
Jiawei Luo, Danhong Xu, Jinbin Wang, Hua Liu, You Li, Yan Zhang, Haijuan Zeng, Bo Deng, Xiaofeng Liu
Escherichia coli O157:H7 (E. coli O157:H7) is a foodborne pathogenic microorganism that is commonly found in the environment and poses a significant threat to human health, public safety, and economic stability worldwide. Thus, early detection is essential for E. coli O157:H7 control. In recent years, a series of E. coli O157:H7 detection methods have been developed, but the sensitivity and portability of the methods still need improvement. Therefore, in this study, a rapid and efficient testing platform based on the CRISPR/Cas12a cleavage reaction was constructed...
April 22, 2024: Analytical and Bioanalytical Chemistry
https://read.qxmd.com/read/38647671/enhancing-surgical-outcomes-accurate-identification-and-removal-of-prostate-cancer-with-b7-h3-targeted-nir-ii-molecular-imaging
#30
JOURNAL ARTICLE
Yaqi Tian, Hongliang Shen, Lingbing Li, Xiaohua Jia, Jin Liu, Zhenhua Hu, Liang Wang, Jie Tian
PURPOSE: One of the main reasons for prostate cancer (PCa) recurrence is the difficulty in identifying and removing cancerous lesions during surgery. Accurately localizing and excising cancerous tissue remains a significant challenge. The second near-infrared window (NIR-II, 1000-1700 nm) fluorescence offers enhanced resolution, a high signal-to-noise ratio, and the potential for deeper tissue penetration. However, this technology is not currently employed for intraoperative imaging of PCa...
April 22, 2024: European Journal of Nuclear Medicine and Molecular Imaging
https://read.qxmd.com/read/38647670/reasons-why-the-idea-that-radiation-exposures-induce-cancer-needs-to-be-revisited
#31
JOURNAL ARTICLE
Nori Nakamura
PURPOSE: It has long been thought that the carcinogenic effect of radiation resulted from the induction of oncogenic mutations which then led to an increase in the proportion of cancer-bearing individuals. However, even as early as the 1960s, there were indications that the carcinogenic effect of radiation might result from the induction of an earlier onset of cancer. Recently, the former notion was challenged by its inability to explain time-dependent decline of the relative risk following an exposure to radiation, and a parallel shift of mouse survival curves toward younger ages following an exposure to radiation...
April 22, 2024: International Journal of Radiation Biology
https://read.qxmd.com/read/38647664/hmgb1-regulates-autophagy-of-placental-trophoblast-through-erk-signaling-pathway
#32
JOURNAL ARTICLE
Ming-Rui Li, En-Xiang Chen, Zhuo-Hang Li, Hong-Lan Song, Yi Zhang, Fang-Fang Li, You-Long Xie, Jing Tang, Yu-Bin Ding, Li-Juan Fu
OBJECTIVE: The purpose of this study is to investigate the role of high mobility group protein B1 (HMGB1) in placental development and fetal growth. METHODS: We employed the Cre-loxP recombination system to establish a placenta-specific HMGB1 knockout mouse model. Breeding HMGB1flox/flox mice with Elf5-Cre mice facilitated the knockout, leveraging Elf5 expression in extra-embryonic ectoderm, ectoplacental cone, and trophoblast giant cells at 12.5 days of embryonic development...
April 22, 2024: Biology of Reproduction
https://read.qxmd.com/read/38647642/biochemistry-biomarkers-and-metal-levels-as-indicators-of-environmental-pollution-in-danio-rerio-exposed-to-the-sorocaba-river-s-p-brazil
#33
JOURNAL ARTICLE
Gabriel Hiroshi Fujiwara, Heidi Samantha Moraes Utsunomiya, João Victor Cassiel Ferraz, Davi Marques Gutierres, Isabela Ferreira Fernandes, Cleoni Dos Santos Carvalho
Metal contamination of the environment poses a significant threat to human health and can cause significant damage to aquatic ecosystems. Danio rerio was exposed to Sorocaba River water for 96 h from two different sites in summer (S) and winter (W). Concentrations of Al, Cd, Cu, Mn and Zn were determined in the exposure water and in sediment. At the end of the exposure, the concentrations of Al, Cu and Mn at the Ibiúna point (P1) and Mn at the Itupararanga point (P2) decreased compared to the initial concentrations in the water...
April 22, 2024: Ecotoxicology
https://read.qxmd.com/read/38647627/chitobiose-exhibited-a-lipid-lowering-effect-in-ob-ob-mice-via-butyric-acid-enrolled-liver-gut-crosstalk
#34
JOURNAL ARTICLE
Xinye Zhuang, Mengyao Zhao, Xiaoguo Ji, Sihan Yang, Hao Yin, Liming Zhao
Chitobiose (COS2 ) efficiently lowers lipids in vivo and facilitates butyric acid enrichment during human fecal fermentation. However, whether COS2 can interact with butyric acid to generate a hypolipidemic effect remains unclear. This study examined the hypolipidemic mechanism of COS2 involving butyric acid, which could alleviate non-alcoholic fatty liver disease (NAFLD). The results revealed that COS2 administration modulated the β-oxidation pathway in the liver and restructured the short chain fatty acids in the fecal of ob/ob-/- mice...
November 9, 2023: Bioresources and Bioprocessing
https://read.qxmd.com/read/38647626/retention-properties-and-mechanism-of-agricultural-waste-maize-whisker-on-atmospheric-mercury
#35
JOURNAL ARTICLE
Guiling Zheng, Qianxiu Chen, Feng Zhou, Peng Li
Mercury (Hg) is a global pollutant transmitted mainly through the atmosphere, posing a serious threat to biological survival and human health. Porous materials, with high specific surface area, high porosity, and high adsorption, are particularly suitable for the purification of atmospheric Hg mixtures. However, plant porous materials are rarely directly used for atmospheric Hg purification. In this study, the properties and mechanism of maize whisker in removing atmospheric Hg were analyzed. The results show that the Hg content in the whiskers increases significantly as the initial Hg concentration increases, and 79...
September 29, 2023: Bioresources and Bioprocessing
https://read.qxmd.com/read/38647543/site-directed-mutagenesis-at-the-glu78-in-ec-nhaa-transporter-impacting-ion-exchange-a-biophysical-study
#36
JOURNAL ARTICLE
Anuradha Yadav, Dinesh Kumar, Manish Dwivedi
Na+ /H+ antiporters facilitate the exchange of Na+ for H+ across the cytoplasmic membrane in prokaryotic and eukaryotic cells. These transporters are crucial to maintain the homeostasis of sodium ions, consequently pH, and volume of the cells. Therefore, sodium/proton antiporters are considered promising therapeutic targets in humans. The Na+ /H+ antiporter in Escherichia coli (Ec-NhaA), a prototype of cation-proton antiporter (CPA) family, transports two protons and one sodium (or Li+ ) in opposite direction...
April 22, 2024: European Biophysics Journal: EBJ
https://read.qxmd.com/read/38647535/convergent-epigenetic-evolution-drives-relapse-in-acute-myeloid-leukemia
#37
JOURNAL ARTICLE
Kevin Nuno, Armon Azizi, Thomas Koehnke, Caleb Lareau, Asiri Ediriwickrema, M Ryan Corces, Ansuman T Satpathy, Ravindra Majeti
Relapse of acute myeloid leukemia (AML) is highly aggressive and often treatment refractory. We analyzed previously published AML relapse cohorts and found that 40% of relapses occur without changes in driver mutations, suggesting that non-genetic mechanisms drive relapse in a large proportion of cases. We therefore characterized epigenetic patterns of AML relapse using 26 matched diagnosis-relapse samples with ATAC-seq. This analysis identified a relapse-specific chromatin accessibility signature for mutationally stable AML, suggesting that AML undergoes epigenetic evolution at relapse independent of mutational changes...
April 22, 2024: ELife
https://read.qxmd.com/read/38647531/a-selective-fibroblast-growth-factor-receptor-1-2-protac-degrader-with-antitumor-activity
#38
JOURNAL ARTICLE
Ying Kong, Xinyue Zhao, Zhaofu Wang, Siqi Yuan, Sheng Chen, Shidi Lou, Shichao Ma, Yunfeng Li, Xinghao Wang, Yangfeng Ge, Guobin Li, Hongbing Yang, Mengxi Zhao, Dandan Li, Hailong Zhang, Wenfu Tan, Juan Wang
The aberrant activation of fibroblast growth factor receptor (FGFR) acts as a potent driver of multiple types of human cancers. Despite the development of several conventional small-molecular FGFR inhibitors, their clinical efficacy is largely compromised due to low selectivity and side effects. Here, we report the selective FGFR1/2-targeting proteolysis targeting chimeric (PROTAC), BR-cpd7 that displays significant isoform specificity to FGFR1/2 with DC50 values around 10 nM, while sparing FGFR3. The following mechanistic investigation reveals the reduced FGFR signaling, through which BR-cpd7 induces cell cycle arrest and consequently blocks the proliferation of multiple FGFR1/2-dependent tumor cells...
April 22, 2024: Molecular Cancer Therapeutics
https://read.qxmd.com/read/38647528/a-bispecific-antibody-that-targets-the-membrane-proximal-region-of-mesothelin-and-retains-high-anticancer-activity-in-the-presence-of-shed-mesothelin
#39
JOURNAL ARTICLE
Anirban Chakraborty, Masanori Onda, Tara O'Shea, Junxia Wei, Xiufen Liu, Tapan K Bera, Ira Pastan
Mesothelin (MSLN) is a cell-surface protein that is expressed on many cancers, which makes it a popular target for antibody-based cancer therapy. However, MSLN is shed from cancer cells at high levels via proteases that cleave at its membrane-proximal C-terminal region. Shed MSLN accumulates in patient fluids and tumors and can block antibody-based MSLN-targeting drugs from killing cancer cells. A previously established monoclonal antibody (mAb), 15B6, binds MSLN at its protease-sensitive C-terminal region and does not bind shed MSLN...
April 22, 2024: Molecular Cancer Therapeutics
https://read.qxmd.com/read/38647505/development-of-a-robotic-cluster-for-automated-and-scalable-cell-therapy-manufacturing
#40
JOURNAL ARTICLE
Alice Melocchi, Brigitte Schmittlein, Alexis L Jones, Yasmine Ainane, Ali Rizvi, Darius Chan, Elaine Dickey, Kelsey Pool, Kenny Harsono, Dorothy Szymkiewicz, Umberto Scarfogliero, Varun Bhatia, Amlesh Sivanantham, Nadia Kreciglowa, Allison Hunter, Miguel Gomez, Adrian Tanner, Marco Uboldi, Arpit Batish, Joanna Balcerek, Mariella Kutova-Stoilova, Sreenivasan Paruthiyil, Luis A Acevedo, Rachel Stadnitskiy, Sabrina Carmichael, Holger Aulbach, Matthew Hewitt, Xavier De Mollerat Du Jeu, Benedetta di Robilant, Federico Parietti, Jonathan H Esensten
BACKGROUND AIMS: The production of commercial autologous cell therapies such as chimeric antigen receptor T cells requires complex manual manufacturing processes. Skilled labor costs and challenges in manufacturing scale-out have contributed to high prices for these products. METHODS: We present a robotic system that uses industry-standard cell therapy manufacturing equipment to automate the steps involved in cell therapy manufacturing. The robotic cluster consists of a robotic arm and customized modules, allowing the robot to manipulate a variety of standard cell therapy instruments and materials such as incubators, bioreactors, and reagent bags...
March 15, 2024: Cytotherapy
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