keyword
https://read.qxmd.com/read/38641227/proteomic-and-cellular-characterization-of-omicron-breakthrough-infections-and-a-third-homologous-or-heterologous-boosting-vaccination-in-a-longitudinal-cohort
#1
JOURNAL ARTICLE
Yi Zhang, Zhangfan Fu, Haocheng Zhang, Ke Lin, Jieyu Song, Jingxin Guo, Qiran Zhang, Guanmin Yuan, Hongyu Wang, Mingxiang Fan, Yuanhan Zhao, Rui Sun, Tiannan Guo, Ning Jiang, Chao Qiu, Wenhong Zhang, Jingwen Ai
BACKGROUND: The understanding of dynamic plasma proteome features in hybrid immunity and breakthrough infection is limited. A deeper understanding of the immune differences between heterologous and homologous immunization could assist in the future establishment of vaccination strategies. METHODS: In this study, 40 participants who received a third dose of either a homologous BBIBP-CorV or a heterologous ZF2001 protein subunit vaccine following two doses of inactivated coronavirus disease 2019 vaccines and 12 patients with BA...
April 17, 2024: Molecular & Cellular Proteomics: MCP
https://read.qxmd.com/read/38612926/tumor-and-peritoneum-associated-macrophage-gene-signature-as-a-novel-molecular-biomarker-in-gastric-cancer
#2
JOURNAL ARTICLE
Kevin M Sullivan, Haiqing Li, Annie Yang, Zhifang Zhang, Ruben R Munoz, Kelly M Mahuron, Yate-Ching Yuan, Isaac Benjamin Paz, Daniel Von Hoff, Haiyong Han, Yuman Fong, Yanghee Woo
A spectrum of immune states resulting from tumor resident macrophages and T-lymphocytes in the solid tumor microenvironment correlates with patient outcomes. We hypothesized that in gastric cancer (GC), macrophages in a polarized immunosuppressive transcriptional state would be prognostic of poor survival. We derived transcriptomic signatures for M2 (M2TS , MRC1 ; MS4A4A ; CD36 ; CCL13 ; CCL18 ; CCL23 ; SLC38A6 ; FGL2 ; FN1 ; MAF ) and M1 (M1TS , CCR7 ; IL2RA ; CXCL11 ; CCL19 ; CXCL10 ; PLA1A ; PTX3 ) macrophages, and cytolytic T-lymphocytes (CTLTS , GZMA ; GZMB ; GZMH ; GZMM ; PRF1 )...
April 8, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38358067/integrated-genetic-analysis-of-diabetic-complications-bioinformatics-insights-into-foot-ulcers-neuropathy-and-peripheral-artery-disease
#3
JOURNAL ARTICLE
Jiaru Liang, Xiaoyang Gong, Xuyang Hu, Chong You, Jiaqi Zhou, Yuling Gao, Junwei Zong, Yong Liu
Diabetic foot ulcers (DFU), diabetic peripheral neuropathy (DPN) and peripheral arterial disease (PAD) are common complications of diabetes mellitus, while diabetic peripheral neuropathy and peripheral arterial disease contribute to the pathogenesis of diabetic foot ulcers, and the pathogenic mechanisms between these three diseases still need further investigation. The keywords 'diabetic foot ulcer', 'diabetic peripheral neuropathy' and 'atherosclerosis' were used to search for related gene sets in the GEO database...
February 2024: International Wound Journal
https://read.qxmd.com/read/38310908/host-transcriptomics-and-machine-learning-for-secondary-bacterial-infections-in-patients-with-covid-19-a-prospective-observational-cohort-study
#4
JOURNAL ARTICLE
Meagan Carney, Tiana Maria Pelaia, Tracy Chew, Sally Teoh, Amy Phu, Karan Kim, Ya Wang, Jonathan Iredell, Yoann Zerbib, Anthony McLean, Klaus Schughart, Benjamin Tang, Maryam Shojaei, Kirsty R Short
BACKGROUND: Viral respiratory tract infections are frequently complicated by secondary bacterial infections. This study aimed to use machine learning to predict the risk of bacterial superinfection in SARS-CoV-2-positive individuals. METHODS: In this prospective, multicentre, observational cohort study done in nine centres in six countries (Australia, Indonesia, Singapore, Italy, Czechia, and France) blood samples and RNA sequencing were used to develop a robust model of predicting secondary bacterial infections in the respiratory tract of patients with COVID-19...
January 30, 2024: The Lancet. Microbe
https://read.qxmd.com/read/38266179/targeted-mass-spectrometry-of-longitudinal-patient-sera-reveals-ltbp1-as-a-potential-surveillance-biomarker-for-high-grade-serous-ovarian-carcinoma
#5
JOURNAL ARTICLE
Deborah Wenk, Shahbaz Khan, Vladimir Ignatchenko, Taymaa May, Marcus Q Bernardini, Thomas Kislinger
High-grade serous ovarian carcinoma (HGSC) is the most prevalent subtype of epithelial ovarian cancer. The combination of a high rate of recurrence and novel therapies in HGSC necessitates an accurate assessment of the disease. Currently, HGSC response to treatment and recurrence are monitored via immunoassay of serum levels of the glycoprotein CA125. CA125 levels predictably rise at HGSC recurrence; however, it is likely that the disease is progressing even before it is detectable through CA125. This may explain why treating solely based on CA125 increase has not been associated with improved outcomes...
January 24, 2024: Journal of Proteome Research
https://read.qxmd.com/read/38251222/analysis-of-joint-protein-expression-profile-in-anterior-disc-displacement-of-tmj-with-or-without-oa
#6
JOURNAL ARTICLE
Luxiang Zou, Kaiwen Yang, Yeke Yu, Chuyao Wang, Jieyun Zhao, Chuan Lu, Dongmei He
OBJECTIVE: Anterior disc displacement (ADD) is a common clinical issue and may cause osteoarthritis (OA). However, the research of protein changes in synovial fluid as disease development marker and potential treatment clue is still insufficient. MATERIALS AND METHODS: We conducted the high-resolution mass spectrometry (MS) of synovial fluid collected from 60 patients with normal disk position to ADD and ADD with osteoarthritis (OA). The proteins with significant changes among the 3 groups were analyzed by biological information and further validated by in primary rat condyle chondrocytes and OA animal model...
January 22, 2024: Oral Diseases
https://read.qxmd.com/read/38191799/fgl2-promotes-tumour-growth-and-attenuates-infiltration-of-activated-immune-cells-in-melanoma-and-ovarian-cancer-models
#7
JOURNAL ARTICLE
Kristianne J C Galpin, Galaxia M Rodriguez, Vincent Maranda, David P Cook, Elizabeth Macdonald, Humaira Murshed, Shan Zhao, Curtis W McCloskey, Andrzej Chruscinski, Gary A Levy, Michele Ardolino, Barbara C Vanderhyden
The tumour microenvironment is infiltrated by immunosuppressive cells, such as regulatory T cells (Tregs), which contribute to tumour escape and impede immunotherapy outcomes. Soluble fibrinogen-like protein 2 (sFGL2), a Treg effector protein, inhibits immune cell populations, via receptors FcγRIIB and FcγRIII, leading to downregulation of CD86 in antigen presenting cells and limiting T cell activation. Increased FGL2 expression is associated with tumour progression and poor survival in several different cancers, such as glioblastoma multiforme, lung, renal, liver, colorectal, and prostate cancer...
January 8, 2024: Scientific Reports
https://read.qxmd.com/read/38158016/dia-based-quantitative-proteomic-analysis-of-porcine-endometrium-in-the-peri-implantation-phase
#8
JOURNAL ARTICLE
Chen Zhou, Yongzhong Wang, Simin He, Shifei Lin, Jie Cheng, Qun Hu, Fanming Meng, Ting Gu, Gengyuan Cai, Zicong Li, Zhenfang Wu, Linjun Hong
The 12th day of gestation is a critical period for embryo loss and the beginning of imminent implantation in sows. Data independent acquisition (DIA) technology is one of the high-throughput, high-resolution and reproducible proteomics technologies for large-scale digital qualitative and quantitative research. The aim of this study was to identify and characterize the protein abundance landscape of Yorkshire pig endometrium on the 12th day of pregnancy (P12) and estrous cycle (C12) using DIA proteomics. A total of 1251 differentially abundant proteins (DAPs) were identified, of which 882 were up-regulated and 369 were down-regulated at P12...
December 27, 2023: Journal of Proteomics
https://read.qxmd.com/read/38056898/fibrinogen-like-protein-2-promotes-tumor-immune-suppression-by-regulating-cholesterol-metabolism-in-myeloid-derived-suppressor-cells
#9
JOURNAL ARTICLE
Lei Wu, Xudong Liu, Juan Lei, Nan Zhang, Huakan Zhao, Jiangang Zhang, Huan Deng, Yongsheng Li
BACKGROUND: Myeloid-derived suppressor cells (MDSCs) are crucial mediators of tumor-associated immune suppression. Targeting the accumulation and activation of MDSCs has been recognized as a promising approach to enhance the effectiveness of immunotherapies for different types of cancer. METHODS: The MC38 and B16 tumor-bearing mouse models were established to investigate the role of Fgl2 during tumor progression. Fgl2 and FcγRIIB-deficient mice, adoptive cell transfer, RNA-sequencing and flow cytometry analysis were used to assess the role of Fgl2 on immunosuppressive activity and differentiation of MDSCs...
December 6, 2023: Journal for Immunotherapy of Cancer
https://read.qxmd.com/read/38036953/comprehensive-analysis-of-mirna-mrna-regulatory-pairs-associated-with-colorectal-cancer-and-the-role-in-tumor-immunity
#10
JOURNAL ARTICLE
Cheng Liu, Chun Yu, Guoxin Song, Xingchen Fan, Shuang Peng, Shiyu Zhang, Xin Zhou, Cheng Zhang, Xiangnan Geng, Tongshan Wang, Wenfang Cheng, Wei Zhu
BACKGROUND: MicroRNA (miRNA) which can act as post-transcriptional regulators of mRNAs via base-pairing with complementary sequences within mRNAs is involved in processes of the complex interaction between immune system and tumors. In this research, we elucidated the profiles of miRNAs and target mRNAs expression and their associations with the phenotypic hallmarks of colorectal cancers (CRC) by integrating transcriptomic, immunophenotype, methylation, mutation and survival data. RESULTS: We conducted the analysis of differential miRNA/mRNA expression profile by GEO, TCGA and GTEx databases and the correlation between miRNA and targeted mRNA by miRTarBase and TarBase...
November 30, 2023: BMC Genomics
https://read.qxmd.com/read/37924141/sfgl2-gene-modified-mscs-regulate-the-differentiation-of-cd4-t-cells-in-the-treatment-of-autoimmune-hepatitis
#11
JOURNAL ARTICLE
Wenbin Ji, Weiwei Wang, Peiyuan Li, Yanhong Liu, Baotong Zhang, Feng Qi
BACKGROUND: Autoimmune hepatitis (AIH) is a T-cell-mediated autoimmune liver disease that can lead to liver injury and has a poor long-term prognosis. Mesenchymal stromal cells (MSCs) have immunosuppressive effects and can treat AIH. CD4+ T cells express the unique inhibitory Fcγ receptor (FcγRIIB), which is the only receptor for the immunosuppressive factor soluble fibrinogen-like protein 2 (sFgl2). This study aimed to examine the therapeutic effect of sFgl2 gene-modified MSCs (sFgl2-MSCs) on AIH...
November 3, 2023: Stem Cell Research & Therapy
https://read.qxmd.com/read/37893006/beyond-the-rhythm-in-silico-identification-of-key-genes-and-therapeutic-targets-in-atrial-fibrillation
#12
JOURNAL ARTICLE
Natalia Atzemian, Nikolas Dovrolis, Georgia Ragia, Konstantina Portokallidou, George Kolios, Vangelis G Manolopoulos
Atrial fibrillation (AF) is a prevalent cardiac arrhythmia worldwide and is characterized by a high risk of thromboembolism, ischemic stroke, and fatality. The precise molecular mechanisms of AF pathogenesis remain unclear. The purpose of this study was to use bioinformatics tools to identify novel key genes in AF, provide deeper insights into the molecular pathogenesis of AF, and uncover potential therapeutic targets. Four publicly available raw RNA-Seq datasets obtained through the ENA Browser, as well as proteomic analysis results, both derived from atrial tissues, were used in this analysis...
September 25, 2023: Biomedicines
https://read.qxmd.com/read/37809868/the-construction-and-validation-of-ecm-related-prognosis-model-in-laryngeal-squamous-cell-carcinoma
#13
JOURNAL ARTICLE
Xue-Fan Jiang, Wen-Jing Jiang
BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a kind of common and aggressive tumor with high mortality. The application of molecular biomarkers is useful for the early diagnosis and treatment of LSCC. METHODS: The expression and clinical information were obtained from The Cancer Genome Atlas (TCGA) database. Principal components analysis (PCA) was used to discriminate between LSCC and normal samples. The hub genes were screened out through univariate and multivariate cox analyses...
September 2023: Heliyon
https://read.qxmd.com/read/37734200/fibrinogen-like-protein-2-regulates-macrophage-glycolytic-reprogramming-by-directly-targeting-pkm2-and-exacerbates-alcoholic-liver-injury
#14
JOURNAL ARTICLE
Xue Hu, Xiaoyang Wan, Yuting Diao, Zhe Shen, Zhongwei Zhang, Peng Wang, Danqin Hu, Xiaojing Wang, Weiming Yan, Chaohui Yu, Xiaoping Luo, Hongwu Wang, Qin Ning
BACKGROUND & AIMS: Switching of the macrophage activation phenotype affects the pathogenesis of alcoholic liver diseases, and metabolic reprogramming can provide the energy demand for macrophage phenotypes shift. However, the molecular mechanism by which immune metabolism regulates the activation of proinflammatory macrophages remains unclear. APPROACH: Expression of Fgl2 was examined in patients with alcoholic hepatitis and healthy controls. Mice were fed with a Lieber-DeCarli diet...
September 19, 2023: International Immunopharmacology
https://read.qxmd.com/read/37703873/bone-marrow-immune-cells-respond-to-fluctuating-nutritional-stress-to-constrain-weight-regain
#15
JOURNAL ARTICLE
Hai-Yan Zhou, Xu Feng, Li-Wen Wang, Rui Zhou, Heng Sun, Xin Chen, Ren-Bin Lu, Yan Huang, Qi Guo, Xiang-Hang Luo
Weight regain after weight loss is a major challenge in the treatment of obesity. Immune cells adapt to fluctuating nutritional stress, but their roles in regulating weight regain remain unclear. Here, we identify a stem cell-like CD7+ monocyte subpopulation accumulating in the bone marrow (BM) of mice and humans that experienced dieting-induced weight loss. Adoptive transfer of CD7+ monocytes suppresses weight regain, whereas inducible depletion of CD7+ monocytes accelerates it. These cells, accumulating metabolic memories via epigenetic adaptations, preferentially migrate to the subcutaneous white adipose tissue (WAT), where they secrete fibrinogen-like protein 2 (FGL2) to activate the protein kinase A (PKA) signaling pathway and facilitate beige fat thermogenesis...
November 7, 2023: Cell Metabolism
https://read.qxmd.com/read/37604833/the-tigit-t-regulatory-cells-subset-associates-with-nosocomial-infection-and-fatal-outcome-in-covid-19-patients-under-mechanical-ventilation
#16
JOURNAL ARTICLE
Mikhael Haruo Fernandes de Lima, Caio Cavalcante Machado, Daniele Carvalho Nascimento, Camila Meirelles S Silva, Juliana Escher Toller-Kawahisa, Tamara Silva Rodrigues, Flavio Protassio Veras, Marjorie Cornejo Pontelli, Italo A Castro, Dario Simões Zamboni, José-Carlos A Filho, Thiago M Cunha, Eurico Arruda, Larissa Dias da Cunha, Renê D R Oliveira, Fernando Q Cunha, Paulo Louzada-Junior
The TIGIT+ FOXP3+ Treg subset (TIGIT+ Tregs) exerts robust suppressive activity on cellular immunity and predisposes septic individuals to opportunistic infection. We hypothesized that TIGIT+ Tregs could play an important role in intensifying the COVID-19 severity and hampering the defense against nosocomial infections during hospitalization. Herein we aimed to verify the association between the levels of the TIGIT+ Tregs with the mechanical ventilation requirement, fatal outcome, and bacteremia during hospitalization...
August 21, 2023: Scientific Reports
https://read.qxmd.com/read/37531749/lncrna-clrn1-as1-reduces-adhesion-ability-of-human-trophoblasts-via-cxcl10-cxcl11
#17
JOURNAL ARTICLE
Yue Zhang, YingJiao Chen, Linyu Zhang, YiLun Wu, Ying Feng, Fang Ma
INTRODUCTION: Trophoblast cells play an important role in embryo recognition and localization, as well as placental development during embryo implantation. Dysfunction of trophoblastic cells causes pathological changes that lead to insufficient recognition, positioning, and adhesion during embryo implantation, ultimately leading to embryo development has stopped. METHODS: High-throughput sequencing was used to identify differentially expressed the mRNA and lncRNA in the villi tissue of pregnant women diagnosed with embryo cessation...
July 16, 2023: Placenta
https://read.qxmd.com/read/37523838/cuyun-recipe-ameliorates-pregnancy-loss-by-regulating-macrophage-polarization-and-hypercoagulable-state-during-the-peri-implantation-period-in-an-ovarian-hyperstimulation-mouse-model
#18
JOURNAL ARTICLE
Wenxin Zhu, Menghao Xu, Mengdi Zhu, Yufan Song, Jinmin Zhang, Cuihong Zheng
BACKGROUND: The Chinese herbal prescription Cuyun Recipe (CYR) has been widely used to treat clinical infertility and has shown good efficacy. Animal experiments have shown that CYR can promote implantation in mice, however, the exact mechanism underlying the implantation has not been elucidated. PURPOSE: To investigate the effect and mechanism of CYR on regulating macrophage polarization and hypercoagulability during the peri-implantation period in mice with ovarian hyperstimulation...
July 20, 2023: Phytomedicine
https://read.qxmd.com/read/37321300/exploring-molecular-dynamic-indicators-associated-with-reproductive-performance-of-bos-indicus-cattle-in-blood-plasma-samples-through-data-independent-acquisition-mass-spectrometry
#19
JOURNAL ARTICLE
M Joel Devadasan, Kerekoppa P Ramesha, Poornima Ramesh, Chinmaya Narayana Kootimole, Sakthivel Jeyakumar, A Ashwitha, Shruthi Ammankallu, Akhila Balakrishna Rai, Arumugam Kumaresan, Veerappa G Vedamurthy, Rajesh Raju, D N Das, Mukund A Kataktalware, Thottethodi Subrahmanya Keshava Prasad
Improving reproductive performance of cattle is of paramount importance for sustainable dairy farming. Poor reproduction performance (RP) hinders the genetic improvement of important Bos indicus cattle breeds. It is well known that incorporation of molecular information along with conventional breeding method is far better than use of conventional method alone for the genetic improvement of reproductive performance traits in cattle. Therefore, the present study sought to investigate the plasma proteome of the Deoni cows in cyclical (n = 6) and pregnant (n = 6) reproductive phases with varying reproductive performance (high and low)...
June 13, 2023: Journal of Proteomics
https://read.qxmd.com/read/37200306/presence-and-activity-of-fibrinogen-like-protein-2-in-platelets
#20
JOURNAL ARTICLE
Izhack Cherny, Pinhas Hasin, Lital Kalich Philosoph, Yael Shahal-Zimra, Ronit Gurion, Esther Rabizadeh
BACKGROUND: Fibrinogen-like protein 2 (FGL2) is a serine protease capable of converting prothrombin into thrombin (i.e., prothrombinase-like activity) while bypassing the classic coagulation cascade. It has been reported to be expressed by mononuclear blood cells and endothelial cells. There are multiple reports that FGL2 supports tumor development and metastasis. However, in the blood, the origin and functional significance of FGL2 has not been established. OBJECTIVE: To determine if FGL2, a malignancy related enzyme, is present in platelets...
2023: PloS One
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