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Manisha goel

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https://www.readbyqxmd.com/read/27771851/in-vitro-refolding-and-characterization-of-recombinant-laccase-cota-from-bacillus-pumilus-mk001-and-its-potential-for-phenolics-degradation
#1
Sandeep Kumar, Kavish Kr Jain, Shikha Rani, Kailash N Bhardwaj, Manisha Goel, Ramesh Chander Kuhad
Among lignocellulolytic enzymes, laccases are the most versatile, broadly specific, and largely studied enzyme with a wide range of biotechnological potential. Putative laccase (CotA) from Bacillus pumilus MK001 was cloned and expressed in E. coli. In addition to soluble bioactive fraction, inactive inclusion body fraction was also harvested and refolded under optimized conditions resulting in 64 % of refolding efficiency. The enzyme was found to be thermostable exhibiting a half-life of 60 min at 80 °C...
October 22, 2016: Molecular Biotechnology
https://www.readbyqxmd.com/read/26930469/selective-disruption-of-disulphide-bonds-lowered-activation-energy-and-improved-catalytic-efficiency-in-talipb-from-trichosporon-asahii-msr54-md-simulations-revealed-flexible-lid-and-extended-substrate-binding-area-in-the-mutant
#2
Yogesh Singh, Namita Gupta, Ved Vrat Verma, Manisha Goel, Rani Gupta
TALipB (33 kDa) is a solvent stable, enantioselective lipase from Trichosporon asahii MSR54. It is cysteine-rich and shows activation in presence of thiol reducing agents. DIANNA server predicted three disulphide bridges C53-C195 (S1), C89-C228 (S2) and C164-C254 (S3) in the enzyme. Selective disruption of disulphide bonds by cysteine to alanine mutations at Cys53 and Cys89 of S1 and S2 bonds resulted in enzyme activation. Mutant mTALipB (S1+S2) showed increase in specific activity by ∼4-fold (834 mM/mg) and improved Vmax of 6...
March 25, 2016: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/26862144/cragdb-a-database-of-annotated-chaperone-repertoire-in-archaeal-genomes
#3
Shikha Rani, Abhishikha Srivastava, Manish Kumar, Manisha Goel
Chaperones are a diverse class of ubiquitous proteins that assist other cellular proteins in folding correctly and maintaining their native structure. Many different chaperones cooperate to constitute the 'proteostasis' machinery in the cells. It has been proposed earlier that archaeal organisms could be ideal model systems for deciphering the basic functioning of the 'protein folding machinery' in higher eukaryotes. Several chaperone families have been characterized in archaea over the years but mostly one protein at a time, making it difficult to decipher the composition and mechanistics of the protein folding system as a whole...
March 2016: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/26810340/early-prediction-of-hypertension-during-pregnancy-in-a-low-resource-setting
#4
Manisha Kumar, Usha Gupta, Jayashree Bhattacharjee, Ritu Singh, Shalini Singh, Manish Goel, Karuna Sharma, Mujeeb U Rehman
OBJECTIVE: To evaluate the role of maternal factors, biomarkers, and uterine-artery Doppler in the prediction of hypertension during pregnancy. METHODS: A prospective cohort study was performed between December 2012 and November 2014. All singleton pregnancies between 11 weeks and 13 weeks, 6 days of pregnancy were included. Patients had their body mass index (BMI, calculated as weight in kilograms divided by the square of height in meters), mean arterial pressure, uterine-artery Doppler pulsatility index, and pregnancy-associated plasma protein A (PAPP-A) and free β-human chorionic gonadotropin levels recorded...
February 2016: International Journal of Gynaecology and Obstetrics
https://www.readbyqxmd.com/read/26657206/medicarpin-a-natural-pterocarpan-heals-cortical-bone-defect-by-activation-of-notch-and-wnt-canonical-signaling-pathways
#5
Manisha Dixit, Ashutosh Raghuvanshi, Chandra Prakash Gupta, Jyoti Kureel, Mohd Nizam Mansoori, Priyanka Shukla, Aijaz A John, Kavita Singh, Dipak Purohit, Pallavi Awasthi, Divya Singh, Atul Goel
We evaluated the bone regeneration and healing effect of Medicarpin (med) in cortical bone defect model that heals by intramembranous ossification. For the study, female Sprague-Dawley rats were ovariectomized and rendered osteopenic. A drill hole injury was generated in mid femoral bones of all the animals. Med treatment was commenced the day after and continued for 15 days. PTH was taken as a reference standard. Fifteen days post-treatment, animals were sacrificed. Bones were collected for histomorphometry studies at the injury site by micro-computed tomography (μCT) and confocal microscopy...
2015: PloS One
https://www.readbyqxmd.com/read/26370226/-phylogenetic-and-evolutionary-analysis-of-functional-divergence-among-gamma-glutamyl-transpeptidase-ggt-subfamilies
#6
Ved Vrat Verma, Rani Gupta, Manisha Goel
BACKGROUND: γ-glutamyltranspeptidase (GGT) is a bi-substrate enzyme conserved in all three domains of life. It catalyzes the cleavage and transfer of γ-glutamyl moiety of glutathione to either water (hydrolysis) or substrates like peptides (transpeptidation). GGTs exhibit great variability in their enzyme kinetics although the mechanism of catalysis is conserved. Recently, GGT has been shown to be a virulence factor in microbes like Helicobacter pylori and Bacillus anthracis. In mammalian cells also, GGT inhibition prior to chemotherapy has been shown to sensitize tumors to the therapy...
2015: Biology Direct
https://www.readbyqxmd.com/read/25475113/cbmar-a-comprehensive-%C3%AE-lactamase-molecular-annotation-resource
#7
Abhishikha Srivastava, Neelja Singhal, Manisha Goel, Jugsharan Singh Virdi, Manish Kumar
β-Lactam antibiotics are among the most widely used antibiotics against microbial pathogens. However, enzymatic hydrolysis of these antibiotics by bacterial β-lactamases is increasingly compromising their efficiency. Although new generation β-lactam antibiotics have been developed to combat antibiotic resistance, β-lactamases have also evolved along with the new variants of the substrate. A strong selection pressure from the newer generation of β-lactam antibiotics has resulted in evolution of different families within each class of β-lactamase...
2014: Database: the Journal of Biological Databases and Curation
https://www.readbyqxmd.com/read/24678282/identification-of-family-specific-fingerprints-in-%C3%AE-lactamase-families
#8
Abhishikha Srivastava, Neelja Singhal, Manisha Goel, Jugsharan Singh Virdi, Manish Kumar
Beta-lactamases are a superfamily of enzymes which degrade the β-lactam class of antibiotics. They are produced endogenously by the bacterial cells, which when exposed to the β-lactam class of antibiotics inactivate them by cleaving the β-lactam ring. Based on the presence or absence of metallic ligand, β-lactamases have been divided into two broad functional classes. β-Lactamases are a constitutively evolving and expanding superfamily of enzymes, which could be further subdivided on the basis of presence/absence of conserved motifs...
2014: TheScientificWorldJournal
https://www.readbyqxmd.com/read/24591937/is-mifepristone-100mg-an-effective-alternative-to-standard-dose-for-medical-abortion
#9
Anupama Goel, Sandhya Mittal, Bk Taneja, Manisha Singhal
OBJECTIVE: To study the efficacy of a low dose of mifepristone (100 mg) in combination with misoprostol, in women undergoing medical termination of pregnancy up to gestation of 49 days. MATERIAL AND METHODS: A prospective study was performed in 50 women (mean age 26.54±3.68 years) with single intrauterine pregnancy of up to 49 days of gestation, presenting to our institution between November 2007 and October 2009. 100 mg mifepristone was given orally, followed 24 hours later by 400 micrograms misoprostol vaginally...
2010: Journal of the Turkish German Gynecological Association
https://www.readbyqxmd.com/read/22754832/proboscis-lateralis-case-report-and-overview
#10
Piyush Verma, Manisha Pal, Ashwani Goel, Ishwar Singh, Virad Bansal
We present a rare case of the congenital malformation of the nose in a 10-month-old baby.
July 2011: Indian Journal of Otolaryngology and Head and Neck Surgery
https://www.readbyqxmd.com/read/21561049/doctors-and-padma-awards
#11
Bhawna Arya, Parul R Chopra, Manisha Goel, Anuj Sharma, Anurag Krishna, Samiran Nundy
UNLABELLED: BACKGROUND; The announcement of the annual Padma awards in January always generates a great deal of interest as well as controversy and, some believe that many good candidates are excluded and many less deserving ones included. We analysed the recipients in the field of medicine to determine whether or not a pattern emerged regarding who were bestowed these honours. We were not able to objectively evaluate whether or not the honours were 'deserved'. METHODS: We obtained and then analysed the list of awardees from newspapers and the official website of the Ministry of Home Affairs...
November 2010: National Medical Journal of India
https://www.readbyqxmd.com/read/21431032/pictorial-essay-congenital-anomalies-of-male-urethra-in-children
#12
Manisha Jana, Arun K Gupta, Kundum R Prasad, Sandeep Goel, Vishal D Tambade, Upasna Sinha
Congenital anomalies of the male urogenital tract are common. Some lesions like posterior urethral valve or anterior urethral diverticulum tend to present early in infancy and are often easily diagnosed on conventional contrast voiding cystourethrograms. Other conditions like posterior urethral diverticulum or utricle can be relatively asymptomatic and therefore present late in childhood. We present the spectrum of imaging findings of common and uncommon anomalies involving the male urethra. Since the pediatric radiologist is often the first to make the diagnosis, he or she should be well aware of these conditions...
January 2011: Indian Journal of Radiology & Imaging
https://www.readbyqxmd.com/read/19733971/preparation-characterization-and-thermolysis-of-nitrate-and-perchlorate-salts-of-2-4-6-trimethylaniline
#13
Inder Pal Singh Kapoor, Manisha Kapoor, Gurdip Singh, Udai P Singh, Nidhi Goel
Nitrate and perchlorate salts of 2,4,6-trimethylaniline have been prepared and characterized by X-ray crystallography and gravimetric analyses. Their thermal decomposition has been studied by TG, TG-DSC and ignition/explosion delays. It has been observed that proton transfer from substituted anilinium ion to nitrate and perchlorate ion regenerate amine, HNO(3) and HClO(4) in condensed phase at higher temperature, where oxidation-reduction between amine and acids leads to ignition and explosion. The kinetics of thermal decomposition was evaluated by applying model fitting as well as isoconversional methods...
January 15, 2010: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/18355836/genome-comparison-and-proteomic-characterization-of-thermus-thermophilus-bacteriophages-p23-45-and-p74-26-siphoviruses-with-triplex-forming-sequences-and-the-longest-known-tails
#14
COMPARATIVE STUDY
Leonid Minakhin, Manisha Goel, Zhanna Berdygulova, Erlan Ramanculov, Laurence Florens, Galina Glazko, Valeri N Karamychev, Alexei I Slesarev, Sergei A Kozyavkin, Igor Khromov, Hans-W Ackermann, Michael Washburn, Arcady Mushegian, Konstantin Severinov
The genomes of two closely related lytic Thermus thermophilus siphoviruses with exceptionally long (approximately 800 nm) tails, bacteriophages P23-45 and P74-26, were sequenced completely. The P23-45 genome consists of 84,201 bp with 117 putative open reading frames (ORFs), and the P74-26 genome has 83,319 bp and 116 putative ORFs. The two genomes are 92% identical with 113 ORFs shared. Only 25% of phage gene product functions can be predicted from similarities to proteins and protein domains with known functions...
April 25, 2008: Journal of Molecular Biology
https://www.readbyqxmd.com/read/18294652/genomic-and-proteomic-analysis-of-phieco32-a-novel-escherichia-coli-bacteriophage
#15
Dhruti Savalia, Lars F Westblade, Manisha Goel, Laurence Florens, Priscilla Kemp, Natalja Akulenko, Olga Pavlova, Julio C Padovan, Brian T Chait, Michael P Washburn, Hans-W Ackermann, Arcady Mushegian, Tarasii Gabisonia, Ian Molineux, Konstantin Severinov
A novel bacteriophage infecting Escherichia coli was isolated during a large-scale screen for bacteriophages that may be used for therapy of mastitis in cattle. The 77,554-bp genome of the bacteriophage, named phiEco32, was sequenced and annotated, and its virions were characterized by electron microscopy and proteomics. Two phiEco32-encoded proteins that interact with host RNA polymerase were identified. One of them is an ECF family sigma factor that may be responsible for transcription of some viral genes...
March 28, 2008: Journal of Molecular Biology
https://www.readbyqxmd.com/read/18082677/2de-identification-of-proteins-exhibiting-turnover-and-phosphorylation-dynamics-during-sea-urchin-egg-activation
#16
Michelle M Roux, Monte J Radeke, Manisha Goel, Arcady Mushegian, Kathy R Foltz
The animal egg is a unique quiescent cell, prepackaged with maternal mRNAs and proteins that have functions in early development. Rapid, transient signaling at fertilization alters egg physiology, resulting in Ca(2+) release from the endoplasmic reticulum (ER) and cytoplasmic alkalinization. These events trigger the zygote developmental program through initiation of DNA synthesis and entry into mitosis. Post-translational modifications of maternal proteins are responsible for the spatio-temporal regulation that orchestrates egg activation...
January 15, 2008: Developmental Biology
https://www.readbyqxmd.com/read/17095691/the-genome-of-the-sea-urchin-strongylocentrotus-purpuratus
#17
Erica Sodergren, George M Weinstock, Eric H Davidson, R Andrew Cameron, Richard A Gibbs, Robert C Angerer, Lynne M Angerer, Maria Ina Arnone, David R Burgess, Robert D Burke, James A Coffman, Michael Dean, Maurice R Elphick, Charles A Ettensohn, Kathy R Foltz, Amro Hamdoun, Richard O Hynes, William H Klein, William Marzluff, David R McClay, Robert L Morris, Arcady Mushegian, Jonathan P Rast, L Courtney Smith, Michael C Thorndyke, Victor D Vacquier, Gary M Wessel, Greg Wray, Lan Zhang, Christine G Elsik, Olga Ermolaeva, Wratko Hlavina, Gretchen Hofmann, Paul Kitts, Melissa J Landrum, Aaron J Mackey, Donna Maglott, Georgia Panopoulou, Albert J Poustka, Kim Pruitt, Victor Sapojnikov, Xingzhi Song, Alexandre Souvorov, Victor Solovyev, Zheng Wei, Charles A Whittaker, Kim Worley, K James Durbin, Yufeng Shen, Olivier Fedrigo, David Garfield, Ralph Haygood, Alexander Primus, Rahul Satija, Tonya Severson, Manuel L Gonzalez-Garay, Andrew R Jackson, Aleksandar Milosavljevic, Mark Tong, Christopher E Killian, Brian T Livingston, Fred H Wilt, Nikki Adams, Robert Bellé, Seth Carbonneau, Rocky Cheung, Patrick Cormier, Bertrand Cosson, Jenifer Croce, Antonio Fernandez-Guerra, Anne-Marie Genevière, Manisha Goel, Hemant Kelkar, Julia Morales, Odile Mulner-Lorillon, Anthony J Robertson, Jared V Goldstone, Bryan Cole, David Epel, Bert Gold, Mark E Hahn, Meredith Howard-Ashby, Mark Scally, John J Stegeman, Erin L Allgood, Jonah Cool, Kyle M Judkins, Shawn S McCafferty, Ashlan M Musante, Robert A Obar, Amanda P Rawson, Blair J Rossetti, Ian R Gibbons, Matthew P Hoffman, Andrew Leone, Sorin Istrail, Stefan C Materna, Manoj P Samanta, Viktor Stolc, Waraporn Tongprasit, Qiang Tu, Karl-Frederik Bergeron, Bruce P Brandhorst, James Whittle, Kevin Berney, David J Bottjer, Cristina Calestani, Kevin Peterson, Elly Chow, Qiu Autumn Yuan, Eran Elhaik, Dan Graur, Justin T Reese, Ian Bosdet, Shin Heesun, Marco A Marra, Jacqueline Schein, Michele K Anderson, Virginia Brockton, Katherine M Buckley, Avis H Cohen, Sebastian D Fugmann, Taku Hibino, Mariano Loza-Coll, Audrey J Majeske, Cynthia Messier, Sham V Nair, Zeev Pancer, David P Terwilliger, Cavit Agca, Enrique Arboleda, Nansheng Chen, Allison M Churcher, F Hallböök, Glen W Humphrey, Mohammed M Idris, Takae Kiyama, Shuguang Liang, Dan Mellott, Xiuqian Mu, Greg Murray, Robert P Olinski, Florian Raible, Matthew Rowe, John S Taylor, Kristin Tessmar-Raible, D Wang, Karen H Wilson, Shunsuke Yaguchi, Terry Gaasterland, Blanca E Galindo, Herath J Gunaratne, Celina Juliano, Masashi Kinukawa, Gary W Moy, Anna T Neill, Mamoru Nomura, Michael Raisch, Anna Reade, Michelle M Roux, Jia L Song, Yi-Hsien Su, Ian K Townley, Ekaterina Voronina, Julian L Wong, Gabriele Amore, Margherita Branno, Euan R Brown, Vincenzo Cavalieri, Véronique Duboc, Louise Duloquin, Constantin Flytzanis, Christian Gache, François Lapraz, Thierry Lepage, Annamaria Locascio, Pedro Martinez, Giorgio Matassi, Valeria Matranga, Ryan Range, Francesca Rizzo, Eric Röttinger, Wendy Beane, Cynthia Bradham, Christine Byrum, Tom Glenn, Sofia Hussain, Gerard Manning, Esther Miranda, Rebecca Thomason, Katherine Walton, Athula Wikramanayke, Shu-Yu Wu, Ronghui Xu, C Titus Brown, Lili Chen, Rachel F Gray, Pei Yun Lee, Jongmin Nam, Paola Oliveri, Joel Smith, Donna Muzny, Stephanie Bell, Joseph Chacko, Andrew Cree, Stacey Curry, Clay Davis, Huyen Dinh, Shannon Dugan-Rocha, Jerry Fowler, Rachel Gill, Cerrissa Hamilton, Judith Hernandez, Sandra Hines, Jennifer Hume, Laronda Jackson, Angela Jolivet, Christie Kovar, Sandra Lee, Lora Lewis, George Miner, Margaret Morgan, Lynne V Nazareth, Geoffrey Okwuonu, David Parker, Ling-Ling Pu, Rachel Thorn, Rita Wright
We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes...
November 10, 2006: Science
https://www.readbyqxmd.com/read/17027740/the-sea-urchin-kinome-a-first-look
#18
Cynthia A Bradham, Kathy R Foltz, Wendy S Beane, Maria I Arnone, Francesca Rizzo, James A Coffman, Arcady Mushegian, Manisha Goel, Julia Morales, Anne-Marie Geneviere, François Lapraz, Anthony J Robertson, Hemant Kelkar, Mariano Loza-Coll, Ian K Townley, Michael Raisch, Michelle M Roux, Thierry Lepage, Christian Gache, David R McClay, Gerard Manning
This paper reports a preliminary in silico analysis of the sea urchin kinome. The predicted protein kinases in the sea urchin genome were identified, annotated and classified, according to both function and kinase domain taxonomy. The results show that the sea urchin kinome, consisting of 353 protein kinases, is closer to the Drosophila kinome (239) than the human kinome (518) with respect to total kinase number. However, the diversity of sea urchin kinases is surprisingly similar to humans, since the urchin kinome is missing only 4 of 186 human subfamilies, while Drosophila lacks 24...
December 1, 2006: Developmental Biology
https://www.readbyqxmd.com/read/16979151/intermediary-metabolism-in-sea-urchin-the-first-inferences-from-the-genome-sequence
#19
Manisha Goel, Arcady Mushegian
The genome sequence of the purple sea urchin Strongylocentrotus purpuratus recently became available. We report the results of functional annotation and initial analysis of more than 2300 proteins predicted to be involved in metabolite transport and enzymatic conversion in sea urchin. The comparison of various reconstructed biosynthetic and catabolic pathways in sea urchin to those known in other genomes suggests the overall similarity of the sea urchin metabolism to that of the vertebrates, with relatively small but non-trivial differences from both vertebrates and protostomes...
December 1, 2006: Developmental Biology
https://www.readbyqxmd.com/read/16911336/noncatheter-associated-vegetative-phlebitis-of-the-superior-vena-cava-presenting-with-multiple-lung-abscesses
#20
Ali Farvid, Manisha Goel, Padmini Varadarajan, Ramdas G Pai
We present a patient with a large vegetation in the superior vena cava (SVC) presenting with multiple staphylococcal lung abscesses. We believe that this is the first reported case of vegetative phlebitis of the SVC without a history of central venous catheter line. Our case emphasizes the need for careful imaging SVC using transesophageal echocardiography in bacteremic patients even in the absence of a central catheter.
August 2006: Echocardiography
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