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https://www.readbyqxmd.com/read/28224923/high-throughput-sequencing-reveals-modulation-of-micrornas-in-vigna-mungo-upon-mungbean-yellow-mosaic-india-virus-inoculation-highlighting-stress-regulation
#1
Anirban Kundu, Sujay Paul, Avishek Dey, Amita Pal
MicroRNAs (miRNAs) are 20-24 nucleotides long non-coding RNAs known to play important regulatory roles during biotic and abiotic stresses by controlling gene expression. Blackgram (Vigna mungo), an economically important grain legume is highly susceptible to pathogenic begomovirus Mungbean Yellow Mosaic India Virus (MYMIV) and resulting in high yield loss. In this study two different leaf-small-RNA libraries were prepared from the pooled RNA at three different time points of resistant V. mungo inbred line VM84 inoculated either with viruliferous or non-viruliferous whiteflies carrying MYMIV and performed high-throughput Illumina sequencing...
April 2017: Plant Science: An International Journal of Experimental Plant Biology
https://www.readbyqxmd.com/read/28212614/transcriptomic-profiling-provides-molecular-insights-into-hydrogen-peroxide-induced-adventitious-rooting-in-mung-bean-seedlings
#2
Shi-Weng Li, Yan Leng, Rui-Fang Shi
BACKGROUND: Hydrogen peroxide (H2O2) has been known to function as a signalling molecule involved in the modulation of various physiological processes in plants. H2O2 has been shown to act as a promoter during adventitious root formation in hypocotyl cuttings. In this study, RNA-Seq was performed to reveal the molecular mechanisms underlying H2O2-induced adventitious rooting. RESULTS: RNA-Seq data revealed that H2O2 treatment greatly increased the numbers of clean reads and expressed genes and abundance of gene expression relative to the water treatment...
February 17, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28209137/transcriptional-analysis-of-defense-mechanisms-in-upland-tetraploid-switchgrass-to-greenbugs
#3
Teresa Donze-Reiner, Nathan A Palmer, Erin D Scully, Travis J Prochaska, Kyle G Koch, Tiffany Heng-Moss, Jeffrey D Bradshaw, Paul Twigg, Keenan Amundsen, Scott E Sattler, Gautam Sarath
BACKGROUND: Aphid infestation of switchgrass (Panicum virgatum) has the potential to reduce yields and biomass quality. Although switchgrass-greenbug (Schizaphis graminum; GB) interactions have been studied at the whole plant level, little information is available on plant defense responses at the molecular level. RESULTS: The global transcriptomic response of switchgrass cv Summer to GB was monitored by RNA-Seq in infested and control (uninfested) plants harvested at 5, 10, and 15 days after infestation (DAI)...
February 16, 2017: BMC Plant Biology
https://www.readbyqxmd.com/read/28207953/sgs1-a-neomorphic-nac52-allele-impairing-ptgs-through-sgs3-down-regulation
#4
Nicolas Butel, Ivan Le Masson, Nathalie Bouteiller, Hervé Vaucheret, Taline Elmayan
Post-transcriptional gene silencing (PTGS) is a defense mechanism that targets invading nucleic acids from endogenous (transposons) or exogenous (pathogens, transgenes) origins. Genetic screens based on the reactivation of silenced transgenes have long been used to identify cellular PTGS components and regulators. Here we show that the first isolated PTGS-deficient mutant, sgs1, is impaired in the transcription factor NAC52. This mutant exhibits striking similarities with a mutant impaired in the H3K4me3 demethylase JMJ14 isolated from the same genetic screen...
February 16, 2017: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/28198429/dynamic-changes-in-the-transcriptome-of-populus-hopeiensis-in-response-to-abscisic-acid
#5
Zhong Chen, Lexiang Ji, Jia Wang, Jinpu Jin, Xiaoyu Yang, Pian Rao, Kai Gao, Weihua Liao, Meixia Ye, Xinmin An
Abscisic acid (ABA) plays a fundamental role in plant response and adaptation to abiotic stresses, such as drought, high salinity and low temperature. Populus hopeiensis exhibits exceptional tolerance to water-deficit environments and is therefore an excellent choice for studying drought tolerance in trees. This study provides a global view of transcriptome dynamics in P. hopeiensis in response to exogenous ABA using Illumina RNA-sequencing. Endogenous ABA content increased and reached a peak at 8 h after ABA treatment and then significantly decreased at latter time points...
February 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28193581/genome-wide-characterization-and-expression-profiling-of-the-nac-genes-under-abiotic-stresses-in-cucumis-sativus
#6
Xiao Meng Zhang, Hong Jun Yu, Chao Sun, Jie Deng, Xue Zhang, Peng Liu, Yun Yun Li, Qiang Li, Wei Jie Jiang
The NAC (standing for no apical meristem [NAM], Arabidopsis transcription activation factor [ATAF] and cup-shaped cotyledon [CUC]) proteins pertain to one of the plant-specific transcription factor families that play important roles in plant development, abiotic stress resistance and signalling transduction. In the present study, the genomic features of the NAC genes in cucumber were analysed in depth using in silico tools. To reveal a tissue-specific, abiotic stress and hormone-responsive expression profile of CsNAC genes, RT-qPCR was performed under different treatments...
January 31, 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28186632/norwood-a-gene-expression-resource-for-evo-devo-studies-of-conifer-wood-development
#7
Soile Jokipii-Lukkari, David Sundell, Ove Nilsson, Torgeir R Hvidsten, Nathaniel R Street, Hannele Tuominen
The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high-spatial-resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into tracheid development. RNA-sequencing data from replicated, high-spatial-resolution section series throughout the cambial and woody tissues of Picea abies were used to generate the NorWood.conGenIE.org web resource, which facilitates exploration of the associated gene expression profiles and co-expression networks...
February 10, 2017: New Phytologist
https://www.readbyqxmd.com/read/28178219/altholactone-inhibits-nf-%C3%AE%C2%BAb-and-stat3-activation-and-induces-reactive-oxygen-species-mediated-apoptosis-in-prostate-cancer-du145-cells
#8
Chunwa Jiang, Muqaddas Masood, Azhar Rasul, Wei Wei, Ya Wang, Muhammad Ali, Muhammad Mustaqeem, Jiang Li, Xiaomeng Li
Altholactone, a natural compound isolated from Goniothalamus spp., has demonstrated anti-inflammatory and anticancer activities, but its molecular mechanisms are still not fully defined. Nuclear factor kappa B (NF-κB) and signal transducer and activator of transcription 3 (STAT3) play pivotal roles in the cell survival of many human tumors. The objective of this study was to elucidate the mechanism of action of altholactone against prostate cancer DU145 cells and to evaluate whether its effects are mediated by inhibition of NF-κB and STAT3 activity...
February 7, 2017: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/28163714/transcriptomics-analysis-of-apple-leaves-in-response-to-alternaria-alternata-apple-pathotype-infection
#9
Longming Zhu, Weichen Ni, Shuai Liu, Binhua Cai, Han Xing, Sanhong Wang
Alternaria blotch disease of apple (Malus × domestica Borkh.), caused by the apple pathotype of Alternaria alternata, is one of the most serious fungal diseases to affect apples. To develop an understanding of how apples respond to A. alternata apple pathotype (AAAP) infection, we examined the host transcript accumulation over the period between 0 and 72 h post AAAP inoculation. Large-scale gene expression analysis was conducted of the compatible interaction between "Starking Delicious" apple cultivar and AAAP using RNA-Seq and digital gene expression (DGE) profiling methods...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28155114/over-expression-of-slja2-decreased-heat-tolerance-of-transgenic-tobacco-plants-via-salicylic-acid-pathway
#10
Zhong-Ming Liu, Meng-Meng Yue, Dong-Yue Yang, Shao-Bo Zhu, Na-Na Ma, Qing-Wei Meng
Over-expression of SlJA2 decreased the accumulation of SA, which resulted in significant physiological and gene expression changes in transgenic tobacco plants, leading to the decreased heat tolerance of transgenic tobacco. NAC family, the largest transcription factors in plants, responses to different environmental stimuli. Here, we isolated a typical NAC transcription factor (SlJA2) from tomato and got transgenic tobacco with SlJA2 over-expression. Expression of SlJA2 was induced by heat stress (42 °C), chilling stress (4 °C), drought stress, osmotic stress, abscisic acid, and salicylic acid...
February 2, 2017: Plant Cell Reports
https://www.readbyqxmd.com/read/28151043/insights-into-the-function-of-the-phasirna-triggering-mir1514-in-response-to-stress-in-legumes
#11
Guadalupe Sosa-Valencia, Paulette S Romero-Pérez, Miguel Palomar, Alejandra A Covarrubias, José L Reyes
We recently described the activity of miR1514a in response to water deficit in Phaseolus vulgaris. Pvu-miR1514a targets a NAC transcription factor mRNA for cleavage and subsequently triggers NAC-derived phasiRNA formation. Here we show that accumulation and activity of miR1514a are also conserved in the model legume Medicago truncatula. Consistently, we identified Mtr-miR1514a and detected its increased accumulation in response to stress conditions, targeting a NAC TF mRNA for cleavage and triggering phasiRNA production...
February 2, 2017: Plant Signaling & Behavior
https://www.readbyqxmd.com/read/28130221/gene-expression-analysis-in-musa-acuminata-during-compatible-interactions-with-meloidogyne-incognita
#12
Nancy Eunice Niño Castañeda, Gabriel Sergio Costa Alves, Rosane Mansan Almeida, Edson Perito Amorim, Claudia Fortes Ferreira, Roberto Coiti Togawa, Marcos Mota Do Carmo Costa, Priscila Grynberg, Jansen Rodrigo Pereira Santos, Juvenil Enrique Cares, Robert Neil Gerard Miller
BACKGROUND AND AIMS: Endoparasitic root-knot nematodes (RKNs) (Meloidogyne spp.) cause considerable losses in banana (Musa spp.), with Meloidogyne incognita a predominant species in Cavendish sub-group bananas. This study investigates the root transcriptome in Musa acuminata genotypes 4297-06 (AA) and Cavendish Grande Naine (CAV; AAA) during early compatible interactions with M. incognita METHODS: Roots were analysed by brightfield light microscopy over a 35 d period to examine nematode penetration and morphological cell transformation...
January 27, 2017: Annals of Botany
https://www.readbyqxmd.com/read/28116501/overexpression-of-a-chrysanthemum-transcription-factor-gene-dgnac1-improves-the-salinity-tolerance-in-chrysanthemum
#13
Ke Wang, Ming Zhong, Yin-Huan Wu, Zhen-Yu Bai, Qian-Yu Liang, Qing-Lin Liu, Yuan-Zhi Pan, Lei Zhang, Bei-Bei Jiang, Yin Jia, Guang-Li Liu
DgNAC1, a transcription factor of chrysanthemum, was functionally verified to confer salt stress responses by regulating stress-responsive genes. NAC transcription factors play effective roles in resistance to different abiotic stresses, and overexpressions of NAC TFs in Arabidopsis have been proved to be conducive in improving salinity tolerance. However, functions of NAC genes in chrysanthemum continue to be poorly understood. Here, we performed physiology and molecular experiments to evaluate roles of DgNAC1 in chrysanthemum salt stress responses...
January 23, 2017: Plant Cell Reports
https://www.readbyqxmd.com/read/28097691/oilseed-rape-nac56-transcription-factor-modulates-reactive-oxygen-species-accumulation-and-hypersensitive-response-like-cell-death
#14
Qinqin Chen, Fangfang Niu, Jingli Yan, Bisi Chen, Feifei Wu, Xiaohua Guo, Bo Yang, Yuan-Qing Jiang
The NAC (NAM, ATAF1/2, CUC2) transcription factor gene family is plant-specific and plays diverse roles in development and responses to abiotic stresses and pathogen challenge. Oilseed rape (Brassica napus) or canola is an important oil crop worldwide, however, the function of NAC genes in it remains largely elusive. Here, we identified and characterized the NAC56 gene isolated from oilseed rape. Expression of BnaNAC56 was induced by abscisic acid (ABA), jasmonic acid (JA), methyl viologen (MV) and a necrotrophic fungal pathogen Sclerotinia sclerotiorum, but repressed by cold...
January 18, 2017: Physiologia Plantarum
https://www.readbyqxmd.com/read/28088515/the-membrane-tethered-nac-transcription-factor-atntl7-contributes-to-er-stress-resistance-in-arabidopsis
#15
Yong Hun Chi, Sarah Mae Boyles Melencion, Cresilda Vergara Alinapon, Min Ji Kim, Eun Seon Lee, Seol Ki Paeng, Joung Hun Park, Ganesh M Nawkar, Young Jun Jung, Ho Byeong Chae, Chang Ho Kang, Sang Yeol Lee
We screened for endoplasmic reticulum (ER) stress-resistant mutants among 25 mutants of the Arabidopsis NTL (NAC with Transmembrane motif 1-Like) family. We identified a novel mutant, SALK_044777, showing strong resistance to ER stress. RT-PCR and genomic DNA sequence analyses identified the mutant as atntl7, which harbors a T-DNA insertion in the fourth exon of AtNTL7. Two other atntl7-mutant alleles, in which T-DNA was inserted in the second exon and third intron of AtNTL7, respectively, showed ER-stress sensitive phenotypes, suggesting that SALK_044777 is a gain-of-function mutant...
January 11, 2017: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/28074873/the-nac-type-transcription-factor-osnac2-regulates-aba-dependent-genes-and-abiotic-stress-tolerance-in-rice
#16
Jiabin Shen, Bo Lv, Liqiong Luo, Jianmei He, Chanjuan Mao, Dandan Xi, Feng Ming
Plants can perceive environmental changes and respond to external stressors. Here, we show that OsNAC2, a member of the NAC transcription factor family, was strongly induced by ABA and osmotic stressors such as drought and high salt. With reduced yields under drought conditions at the flowering stage, OsNAC2 overexpression lines had lower resistance to high salt and drought conditions. RNAi plants showed enhanced tolerance to high salinity and drought stress at both the vegetative and flowering stages. Furthermore, RNAi plants had improved yields after drought stress...
January 11, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28064119/identification-and-expression-analysis-of-the-nac-transcription-factor-family-in-durum-wheat-triticum-turgidum-l-ssp-durum
#17
Mohammed Najib Saidi, Dhawya Mergby, Faiçal Brini
The NAC (NAM, ATAF and CUC) proteins belong to one of the largest plant-specific transcription factor (TF) families and play important roles in plant development processes, response to biotic and abiotic cues and hormone signaling. Our analysis led to the identification of 168 NAC genes in durum wheat, including nine putative membrane-bound TFs and 48 homeologous genes pairs. Phylogenetic analyses of TtNACs along with their Arabidopsis, grape, barley and rice counterparts divided these proteins into 8 phylogenetic groups and allowed the identification of TtNAC-A7, TtNAC-B35, TtNAC-A68, TtNAC-B69 and TtNAC-A43 as homologs of OsNAC1, OsNAC8, OsNTL2, OsNTL5 and ANAC025/NTL14, respectively...
January 2, 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28061815/overexpression-of-panac03-a-stress-induced-nac-gene-family-transcription-factor-in-norway-spruce-leads-to-reduced-flavonol-biosynthesis-and-aberrant-embryo-development
#18
Kerstin Dalman, Julia Johanna Wind, Miguel Nemesio-Gorriz, Almuth Hammerbacher, Karl Lundén, Ines Ezcurra, Malin Elfstrand
BACKGROUND: The NAC family of transcription factors is one of the largest gene families of transcription factors in plants and the conifer NAC gene family is at least as large, or possibly larger, as in Arabidopsis. These transcription factors control both developmental and stress induced processes in plants. Yet, conifer NACs controlling stress induced processes has received relatively little attention. This study investigates NAC family transcription factors involved in the responses to the pathogen Heterobasidion annosum (Fr...
January 6, 2017: BMC Plant Biology
https://www.readbyqxmd.com/read/28039561/functional-characterization-of-tomato-membrane-bound-nac-transcription-factors
#19
Payel Bhattacharjee, Rohit Das, Arunava Mandal, Pallob Kundu
Genome-wide analysis was carried out to identify and analyze differential expression pattern of tomato membrane bound NAC transcription factors (SlNACMTFs) during stresses. Two biotic-stress-related SlNACMTFs have been characterized to elucidate their regulatory function. NAC transcription factors are known regulators of stress-related gene expression. As Stresses are perceived and transmitted by membrane-bound proteins, functional characterization of membrane-associated NAC transcription factors in tomato can reveal valuable insight about membrane-mediated stress-signalling...
December 30, 2016: Plant Molecular Biology
https://www.readbyqxmd.com/read/28032643/an-arabidopsis-nac-transcription-factor-nac4-promotes-pathogen-induced-cell-death-under-negative-regulation-by-microrna164
#20
Myoung-Hoon Lee, Hwi Seong Jeon, Hye Gi Kim, Ohkmae K Park
Hypersensitive response (HR) is a form of programmed cell death (PCD) and the primary immune response that prevents pathogen invasion in plants. Here, we show that a microRNAmiR164 and its target gene NAC4 (At5g07680), encoding a NAC transcription factor, play essential roles in the regulation of HR PCD in Arabidopsis thaliana. Cell death symptoms were noticeably enhanced in NAC4-overexpressing (35S:NAC4) and mir164 mutant plants in response to avirulent bacterial pathogens. NAC4 expression was induced by pathogen infection and negatively regulated by miR164 expression...
December 29, 2016: New Phytologist
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