keyword
MENU ▼
Read by QxMD icon Read
search

Matlab

keyword
https://www.readbyqxmd.com/read/28228408/a-method-for-quantifying-limbal-stem-cell-niches-using-oct-imaging
#1
Michel Haagdorens, Joséphine Behaegel, Jos Rozema, Veerle Van Gerwen, Sofie Michiels, Sorcha Ní Dhubhghaill, Marie-José Tassignon, Nadia Zakaria
AIMS: To evaluate the efficacy of Fourier domain-optical coherence tomography (FD-OCT) in imaging and quantifying the limbal palisades of Vogt and to correlate these images with histological findings. METHODS: The superior and inferior limbal region of both eyes of 50 healthy volunteers were imaged by FD-OCT. Images were processed and analysed using Matlab software. In vitro immunofluorescent staining of a cadaveric donor limbus was analysed to correlate the presence of stem cells in the visualised structures...
February 22, 2017: British Journal of Ophthalmology
https://www.readbyqxmd.com/read/28228171/quantification-of-multicellular-organization-junction-integrity-and-substrate-features-in-collective-cell-migration
#2
Adam C Canver, Alisa Morss Clyne
Quantitative analysis of multicellular organization, cell-cell junction integrity, and substrate properties is essential to understand the mechanisms underlying collective cell migration. However, spatially and temporally defining these properties is difficult within collectively migrating cell groups due to challenges in accurate cell segmentation within the monolayer. In this paper, we present Matlab®-based algorithms to spatially quantify multicellular organization (migration distance, interface roughness, and cell alignment, area, and morphology), cell-cell junction integrity, and substrate features in confocal microscopy images of two-dimensional collectively migrating endothelial monolayers...
February 2017: Microscopy and Microanalysis
https://www.readbyqxmd.com/read/28227873/a-comprehensive-reputation-mechanism-for-ubiquitous-healthcare-environment-exploiting-cloud-model
#3
Georgia Athanasiou, Dimitrios Lymberopoulos, Georgia Athanasiou, Dimitrios Lymberopoulos, Dimitrios Lymberopoulos, Georgia Athanasiou
Absence of trust foundations may outweigh benefits of ubiquitous and personalized mental healthcare supervision provided within a Ubiquitous Healthcare environment (UH). Trust is composed by patient's Personal Interaction Experience (PIE) and social entourage accumulated PIE, i.e. Reputation (R). In this paper, a cloud-based Reputation mechanism is proposed. Since PIE is the elementary trust information source, also an Updating mechanism of PIE, is introduced, in this paper. Cloud materialization of combined mechanisms provides adaptability to UH Providers' dynamic behavior, facilitates detection of milking behaviors and complex malicious attacks while meets the challenge of limited accuracy in case of data sparseness...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227848/motion-noise-cancellation-in-seismocardiogram-of-ambulant-subjects-with-dual-sensors
#4
Chenxi Yang, Negar Tavassolian, Chenxi Yang, Negar Tavassolian, Negar Tavassolian, Chenxi Yang
This paper presents a dual-sensor method of extracting seismocardiographic (SCG) data from moving adult subjects using chest-worn wireless MEMS accelerometers. A digital signal processing (DSP) system including a normalized least means square (NLMS) adaptive filter is designed and tested in MATLAB. Data results from 10 subjects indicate a detection rate of 98.72% which outperforms our previously-proposed single-sensor scheme. Various sensor positons and possible failure mechanisms are also investigated to further evaluate the system performance...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227614/portable-prescreening-system-for-sleep-apnea
#5
Martin Kjaer Guul, Poul Jennum, Helge B D Sorensen, Martin Kjaer Guul, Poul Jennum, Helge B D Sorensen, Martin Kjaer Guul, Helge B D Sorensen, Poul Jennum
Obstructive sleep apnea (OSA) occurs in more than 4 % of the adult population. Diagnoses for OSA in sleep clinics are costly and more than half of those submitted to a sleep clinic do not have OSA. A simple, easy, and portable homebased monitoring system to evaluate who are in high-or low risk of suffering from OSA would be beneficial. The system must be able to identify individuals with a high pre-test reliability regarding OSA with the aim of referral and further investigation. We aimed to develop a portable, smartphone, and homebased monitoring system to classify whether a patient screened for sleep apnea is at high risk or low risk of having OSA...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227305/a-matlab-based-graphical-user-interface-for-the-identification-of-muscular-activations-from-surface-electromyography-signals
#6
Alessandro Mengarelli, Stefano Cardarelli, Federica Verdini, Laura Burattini, Sandro Fioretti, Francesco Di Nardo, Alessandro Mengarelli, Stefano Cardarelli, Federica Verdini, Laura Burattini, Sandro Fioretti, Francesco Di Nardo, Stefano Cardarelli, Federica Verdini, Alessandro Mengarelli, Sandro Fioretti, Laura Burattini, Francesco Di Nardo
In this paper a graphical user interface (GUI) built in MATLAB® environment is presented. This interactive tool has been developed for the analysis of superficial electromyography (sEMG) signals and in particular for the assessment of the muscle activation time intervals. After the signal import, the tool performs a first analysis in a totally user independent way, providing a reliable computation of the muscular activation sequences. Furthermore, the user has the opportunity to modify each parameter of the on/off identification algorithm implemented in the presented tool...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227282/development-of-matlab-software-to-control-data-acquisition-from-a-multichannel-systems-multi-electrode-array
#7
Erik Messier, Behnaz Ghoraani, Erik Messier, Erik Messier, Behnaz Ghoraani
A Multichannel Systems (MCS) microelectrode array data acquisition (DAQ) unit is used to collect multichannel electrograms (EGM) from a Langendorff perfused rabbit heart system to study sudden cardiac death (SCD). MCS provides software through which data being processed by the DAQ unit can be displayed and saved, but this software's combined utility with MATLAB is not very effective. MCSs software stores recorded EGM data in a MathCad (MCD) format, which is then converted to a text file format. These text files are very large, and it is therefore very time consuming to import the EGM data into MATLAB for real-time analysis...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227280/a-low-power-level-crossing-adc-for-wearable-wireless-ecg-sensors
#8
Zhenzhen Tian, Rendong Ying, Peilin Liu, Guoxing Wang, Yong Lian, Zhenzhen Tian, Rendong Ying, Peilin Liu, Guoxing Wang, Yong Lian, Yong Lian, Peilin Liu, Guoxing Wang, Zhenzhen Tian, Rendong Ying
Ultra-low power consumption is desired in most wearable biomedical devices. The event-driven based Analog-to-Digital converter (ADC) could be an excellent candidate for low power system because of the reduction in sampling points for biosignals. In the existing event-driven based ADC architectures, two or more high precision comparators are utilized to sample the input signal. In this paper, we propose a new scheme utilizing only one high precision comparator to genertate samples with the assistance of a low precision one...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28227061/moses-a-matlab-based-open-source-stochastic-epidemic-simulator
#9
Huseyin Atakan Varol, Huseyin Atakan Varol, Huseyin Atakan Varol
This paper presents an open-source stochastic epidemic simulator. Discrete Time Markov Chain based simulator is implemented in Matlab. The simulator capable of simulating SEQIJR (susceptible, exposed, quarantined, infected, isolated and recovered) model can be reduced to simpler models by setting some of the parameters (transition probabilities) to zero. Similarly, it can be extended to more complicated models by editing the source code. It is designed to be used for testing different control algorithms to contain epidemics...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226941/large-deflection-statics-analysis-of-active-cardiac-catheters-through-co-rotational-modelling
#10
Peng Qi, Chen Qiu, Aadarsh Mehndiratta, I-Ming Chen, Haoyong Yu, Peng Qi, Chen Qiu, Aadarsh Mehndiratta, I-Ming Chen, Haoyong Yu, Peng Qi, Aadarsh Mehndiratta, I-Ming Chen, Haoyong Yu, Chen Qiu
This paper presents a co-rotational concept for large-deflection formulation of cardiac catheters. Using this approach, the catheter is first discretized with a number of equal length beam elements and nodes, and the rigid body motions of an individual beam element are separated from its deformations. Therefore, it is adequate for modelling arbitrarily large deflections of a catheter with linear elastic analysis at the local element level. A novel design of active cardiac catheter of 9 Fr in diameter at the beginning of the paper is proposed, which is based on the contra-rotating double helix patterns and is improved from the previous prototypes...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226867/qapd-an-integrated-system-to-quantify-symptoms-of-parkinson-s-disease
#11
Vrajeshri Patel, Martin Burns, Michael Pourfar, Alon Mogilner, Douglas Kondziolka, Ramana Vinjamuri, Vrajeshri Patel, Martin Burns, Michael Pourfar, Alon Mogilner, Douglas Kondziolka, Ramana Vinjamuri, Douglas Kondziolka, Ramana Vinjamuri, Martin Burns, Alon Mogilner, Michael Pourfar, Vrajeshri Patel
The complex prevalence of Parkinson's disease (PD) symptoms has pushed research towards assessment tools that can assist in their quantification. There remains a need for a system capable of measuring symptoms during various tasks at multiple motor levels (kinematics and electromyography). In this paper, we present the development and initial validation of a quantitative assessment tool for Parkinson's disease (QAPD), a system designed to assist researchers and clinicians in the study of PD. The system integrates motion tracking, data gloves, and electromyography to collect movement related data from multiple body parts...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226843/comparison-of-mean-frequency-and-median-frequency-in-evaluating-muscle-fiber-type-selection-in-varying-gait-speed-across-healthy-young-adult-individuals
#12
C K Chan, G Fu Timothy, C H Yeow, C K Chan, G Fu Timothy, C H Yeow, C K Chan, C H Yeow
The preferential slow and fast twitches fiber involvement in varying gait speed has not been thoroughly investigated. Attempt to classify fiber type in changing speed should be closely investigated and scrutinized as the histochemical-related experiments are cumbersome and time consuming. In addressing this issue, electromyography (EMG) is utilized to extract the muscle fiber type features by altering the muscle fatigue indices, namely mean frequency (MNF) and median frequency (MDF). Recently, there are no universal indices to determine the muscle type...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28217081/blinker-automated-extraction-of-ocular-indices-from-eeg-enabling-large-scale-analysis
#13
Kelly Kleifges, Nima Bigdely-Shamlo, Scott E Kerick, Kay A Robbins
Electroencephalography (EEG) offers a platform for studying the relationships between behavioral measures, such as blink rate and duration, with neural correlates of fatigue and attention, such as theta and alpha band power. Further, the existence of EEG studies covering a variety of subjects and tasks provides opportunities for the community to better characterize variability of these measures across tasks and subjects. We have implemented an automated pipeline (BLINKER) for extracting ocular indices such as blink rate, blink duration, and blink velocity-amplitude ratios from EEG channels, EOG channels, and/or independent components (ICs)...
2017: Frontiers in Neuroscience
https://www.readbyqxmd.com/read/28216082/semi-automated-program-for-analysis-of-local-ca-2-spark-release-with-application-for-classification-of-heart-cell-type
#14
REVIEW
Moran Davoodi, Sofia Segal, Noa Kirschner Peretz, David Kamoun, Yael Yaniv
Local Ca(2+) spark releases are essential to the Ca(2+) cycling process. Thus, they play an important role in ventricular and atrial cell contraction, as well as in sinoatrial cell automaticity. Characterizing their properties in healthy cells from different regions in the heart can reveal the basic biophysical differences among these regions. We designed a semi-automatic Matlab Graphical User Interface (called Sparkalyzer) to characterize parameters of Ca(2+) spark release from any major cardiac tissue, as recorded in line-scan mode with a confocal laser-scanning microscope...
February 9, 2017: Cell Calcium
https://www.readbyqxmd.com/read/28209502/detailed-phenotyping-and-characterization-of-choroidal-morphological-and-vascular-features-in-young-men-with-high-myopia-using-spectral-domain-optical-coherence-tomography
#15
Preeti Gupta, Sri Gowtham Thakku, Seang-Mei Saw, Mellisa Tan, Edmund Lim, Marcus Tan, Chui Ming Gemmy Cheung, Tien-Yin Wong, Ching-Yu Cheng
PURPOSE: To describe detailed morphological and vascular features of the choroid in eyes with high myopia. DESIGN: Cross-sectional study. METHODS: 515 eyes of young men (mean age 21.59±1.15) years) with high myopia (defined as -6.0 D or worse, mean spherical equivalent -8.66±2.00 D) and 88 controls with emmetropia in both eyes underwent choroidal imaging using spectral domain optical coherence tomography with enhanced depth imaging (EDI-OCT)...
February 13, 2017: American Journal of Ophthalmology
https://www.readbyqxmd.com/read/28196481/nuctools-analysis-of-chromatin-feature-occupancy-profiles-from-high-throughput-sequencing-data
#16
Yevhen Vainshtein, Karsten Rippe, Vladimir B Teif
BACKGROUND: Biomedical applications of high-throughput sequencing methods generate a vast amount of data in which numerous chromatin features are mapped along the genome. The results are frequently analysed by creating binary data sets that link the presence/absence of a given feature to specific genomic loci. However, the nucleosome occupancy or chromatin accessibility landscape is essentially continuous. It is currently a challenge in the field to cope with continuous distributions of deep sequencing chromatin readouts and to integrate the different types of discrete chromatin features to reveal linkages between them...
February 14, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28196198/en-face-doppler-optical-coherence-tomography-measurement-of-total-retinal-blood-flow-in-diabetic-retinopathy-and-diabetic-macular-edema
#17
ByungKun Lee, Eduardo A Novais, Nadia K Waheed, Mehreen Adhi, Talisa E de Carlo, Emily D Cole, Eric M Moult, WooJhon Choi, Mark Lane, Caroline R Baumal, Jay S Duker, James G Fujimoto
Importance: Alterations in ocular blood flow play an important role in the pathogenesis and progression of diabetic retinopathy (DR). However, the measurement of retinal blood flow in clinical studies has been challenging. En face Doppler optical coherence tomography (OCT) provides an effective method for measuring total retinal blood flow (TRBF) in the clinic. Objective: To investigate TRBF in eyes with DR of varying severity, with or without diabetic macular edema (DME), using en face Doppler OCT...
February 9, 2017: JAMA Ophthalmology
https://www.readbyqxmd.com/read/28192130/ielvis-an-open-source-matlab-toolbox-for-localizing-and-visualizing-human-intracranial-electrode-data
#18
David M Groppe, Stephan Bickel, Andrew R Dykstra, Xiuyuan Wang, Pierre Mégevand, Manuel R Mercier, Fred A Lado, Ashesh D Mehta, Christopher J Honey
BACKGROUND: Intracranial electrical recordings (iEEG) and brain stimulation (iEBS) are invaluable human neuroscience methodologies. However, the value of such data is often unrealized as many laboratories lack tools for localizing electrodes relative to anatomy. To remedy this, we have developed a MATLAB toolbox for intracranial electrode localization and visualization, iELVis. NEW METHOD: iELVis uses existing tools (BioImage Suite, FSL, and FreeSurfer) for preimplant magnetic resonance imaging (MRI) segmentation, neuroimaging coregistration, and manual identification of electrodes in postimplant neuroimaging...
February 9, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28191033/algorithm-and-software-to-automatically-identify-latency-and-amplitude-features-of-local-field-potentials-recorded-in-electrophysiological-investigation
#19
Maria Rubega, Claudia Cecchetto, Stefano Vassanelli, Giovanni Sparacino
BACKGROUND: Local field potentials (LFPs) evoked by sensory stimulation are particularly useful in electrophysiological research. For instance, spike timing and current transmembrane current flow estimated from LFPs recorded in the barrel cortex in rats and mice are exploited to investigate how the brain represents sensory stimuli. Recent improvements in microelectrodes technology enable neuroscientists to acquire a great amount of LFPs during the same experimental session, calling for algorithms for their quantitative automatic analysis...
2017: Source Code for Biology and Medicine
https://www.readbyqxmd.com/read/28190994/suepdf-a-program-to-obtain-quantitative-pair-distribution-functions-from-electron-diffraction-data
#20
Dung Trung Tran, Gunnar Svensson, Cheuk-Wai Tai
SUePDF is a graphical user interface program written in MATLAB to achieve quantitative pair distribution functions (PDFs) from electron diffraction data. The program facilitates structural studies of amorphous materials and small nanoparticles using electron diffraction data from transmission electron microscopes. It is based on the physics of electron scattering as well as the total scattering methodology. A method of background modeling is introduced to treat the intensity tail of the direct beam, inelastic scattering and incoherent multiple scattering...
February 1, 2017: Journal of Applied Crystallography
keyword
keyword
101607
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"