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https://www.readbyqxmd.com/read/28727914/the-enora2-exact-noe-analysis-program
#1
Dean Strotz, Julien Orts, Celestine N Chi, Roland Riek, Beat Vögeli
We have recently developed an NMR protocol to extract exact distances between nuclei in proteins from an exact interpretation of NOESY buildup intensities (eNOEs). This enabled us to calculate multi-state structural ensembles that exhibit realistic spatial sampling and long-range correlations. Our initial studies were laborious and required a deep understanding of the underlying spin dynamics. Here, we present a MatLab package that integrates all data processing steps required to convert intensities of assigned peaks in NOESY series into upper and lower distance limits for structure calculation...
July 20, 2017: Journal of Chemical Theory and Computation
https://www.readbyqxmd.com/read/28726698/experimental-study-and-artificial-neural-network-modeling-of-tartrazine-removal-by-photocatalytic-process-under-solar-light
#2
Aicha Sebti, Fatiha Souahi, Faroudja Mohellebi, Sadek Igoud
This research focuses on the application of an artificial neural network (ANN) to predict the removal efficiency of tartrazine from simulated wastewater using a photocatalytic process under solar illumination. A program is developed in Matlab software to optimize the neural network architecture and select the suitable combination of training algorithm, activation function and hidden neurons number. The experimental results of a batch reactor operated under different conditions of pH, TiO2 concentration, initial organic pollutant concentration and solar radiation intensity are used to train, validate and test the networks...
July 2017: Water Science and Technology: a Journal of the International Association on Water Pollution Research
https://www.readbyqxmd.com/read/28721359/dataset-on-force-measurements-of-needle-insertions-into-two-ex-vivo-human-livers
#3
Tonke L de Jong, Jenny Dankelman, John J van den Dobbelsteen
A needle-tissue interaction experiment has been carried out, by inserting the inner needle of a trocar needle into two ex-vivo human livers. The dataset contains the forces that act on the needle during insertion and retraction into the livers. In addition, a MATLAB code file is included that provides base-level analysis of the data and generates force-position diagrams of the needle insertions. The dataset is available on Mendeley Data (do1i:10.17632/94s7xd9mzt.2), and is made publicly available to enable other researchers to use it for their own research purposes...
April 2017: Data in Brief
https://www.readbyqxmd.com/read/28710010/local-network-component-analysis-for-quantifying-transcription-factor-activities
#4
Qianqian Shi, Chuanchao Zhang, Weifeng Guo, Tao Zeng, Lina Lu, Zhonglin Jiang, Ziming Wang, Juan Liu, Luonan Chen
Transcription factors (TFs) could regulate physiological transitions or determine stable phenotypic diversity. The accurate estimation on TF regulatory signals or functional activities is of great significance to guide biological experiments or elucidate molecular mechanisms, but still remains challenging. Traditional methods identify TF regulatory signals at the population level, which masks heterogeneous regulation mechanisms in individuals or subgroups, thus resulting in inaccurate analyses. Here, we propose a novel computational framework, namely Local Network Component Analysis (LNCA), to exploit data heterogeneity and automatically quantify accurate transcription factor activity (TFA) in practical terms, through integrating the partitioned expression sets (i...
July 11, 2017: Methods: a Companion to Methods in Enzymology
https://www.readbyqxmd.com/read/28709652/cooperative-path-following-control-of-multiple-nonholonomic-mobile-robots
#5
Ke-Cai Cao, Bin Jiang, Dong Yue
Cooperative path following control problem of multiple nonholonomic mobile robots has been considered in this paper. Based on the framework of decomposition, the cooperative path following problem has been transformed into path following problem and cooperative control problem; Then cascaded theory of non-autonomous system has been employed in the design of controllers without resorting to feedback linearization. One time-varying coordinate transformation based on dilation has been introduced to solve the uncontrollable problem of nonholonomic robots when the whole group's reference converges to stationary point...
July 11, 2017: ISA Transactions
https://www.readbyqxmd.com/read/28709588/postural-disorders-in-mouth-breathing-children-a-systematic-review
#6
REVIEW
Patricia Dayrell Neiva, Renata Noce Kirkwood, Polyana Leite Mendes, Karl Zabjek, Helena Gonçalves Becker, Sunita Mathur
BACKGROUND: Mouth breathing syndrome can cause sleep disturbances that compromise the performance of children in school. It might also cause postural abnormalities involving the head and cervical spine; however, the association between postural abnormalities and mouth breathing in children is unclear. OBJECTIVE: To assess the methodological quality of studies and determine if there is an association between mouth breathing and postural disorders in children. METHODS: Databases comprised MEDLINE, CINAHL, PEDro, LILACS, EMBASE and Cochrane Central Registrar of Controlled Trials...
July 5, 2017: Brazilian Journal of Physical Therapy
https://www.readbyqxmd.com/read/28703318/ft-artifacts-and-power-function-resolution-filter-in-fourier-transform-mass-spectrometry
#7
Basem Kanawati, Theresa Bader, Karl-Peter Wanczek, Yan Li, Philippe Schmitt-Kopplin
RATIONALE: Peak picking algorithms in mass spectrometry face the challenge of picking the correct signals from a mass spectrum. In some cases signal wiggles (side lobes) are also chosen in the produced mass list as if they were real signals. Constraints which are defined in such algorithms do not always guarantee wiggle free accurate mass list generation out of raw mass spectra. This problem intensifies with acquisitions, which are accompanied with longer transients. Thus, the problem represents a contemporary issue, which propagates with modern high memory digitizers and exists in both MS and MS/MS spectra...
July 13, 2017: Rapid Communications in Mass Spectrometry: RCM
https://www.readbyqxmd.com/read/28703278/reconstruction-of-3d-grain-boundaries-from-rock-thin-sections-using-an-advanced-polarised-light-microscopy-method
#8
D M Hammes, M Peternell
Grain boundaries play a significant role in materials by initiating reactions and collecting impurities. Here we present FAGO (Fabric Analyser Grain boundary recOnstruction), a first step towards the automatic determination of three-dimensional (3D) grain boundary geometry using polarised light. The trace of the grain boundaries from 2D rock thin sections are determined primarily from data acquired using an automatic fabric analyser microscope and the FAME software (fabric analyser-based microstructure evaluation; Peternell and colleagues and Hammes and Peternell)...
July 13, 2017: Journal of Microscopy
https://www.readbyqxmd.com/read/28702051/random-forest-based-approach-for-maximum-power-point-tracking-of-photovoltaic-systems-operating-under-actual-environmental-conditions
#9
Hussain Shareef, Ammar Hussein Mutlag, Azah Mohamed
Many maximum power point tracking (MPPT) algorithms have been developed in recent years to maximize the produced PV energy. These algorithms are not sufficiently robust because of fast-changing environmental conditions, efficiency, accuracy at steady-state value, and dynamics of the tracking algorithm. Thus, this paper proposes a new random forest (RF) model to improve MPPT performance. The RF model has the ability to capture the nonlinear association of patterns between predictors, such as irradiance and temperature, to determine accurate maximum power point...
2017: Computational Intelligence and Neuroscience
https://www.readbyqxmd.com/read/28701991/an-arterial-spin-labeling-mri-perfusion-study-of-migraine-without-aura-attacks
#10
Raquel Gil-Gouveia, Joana Pinto, Patricia Figueiredo, Pedro Ferro Vilela, Isabel Pavão Martins
BACKGROUND: Studies of brain perfusion during migraine without aura attacks have inconsistent results. METHODS: Arterial spin labeling MRI, a non-invasive quantitative perfusion technique, was used to prospectively study a spontaneous untreated migraine without aura attack and a headache-free period. Image analysis used FSL and MATLAB software; Group analysis used permutation methods for perfusion differences between sessions. RESULTS: Thirteen women (age 35...
2017: Frontiers in Neurology
https://www.readbyqxmd.com/read/28698107/dynamic-graph-metrics-tutorial-toolbox-and-tale
#11
REVIEW
Ann E Sizemore, Danielle S Bassett
The central nervous system is composed of many individual units - from cells to areas - that are connected with one another in a complex pattern of functional interactions that supports perception, action, and cognition. One natural and parsimonious representation of such a system is a graph in which nodes (units) are connected by edges (interactions). While applicable across spatiotemporal scales, species, and cohorts, the traditional graph approach is unable to address the complexity of time-varying connectivity patterns that may be critically important for an understanding of emotional and cognitive state, task-switching, adaptation and development, or aging and disease progression...
July 8, 2017: NeuroImage
https://www.readbyqxmd.com/read/28696409/a-global-multiproxy-database-for-temperature-reconstructions-of-the-common-era
#12
(no author information available yet)
Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial...
July 11, 2017: Scientific Data
https://www.readbyqxmd.com/read/28693854/community-transmission-of-type-2-poliovirus-after-cessation-of-trivalent-oral-polio-vaccine-in-bangladesh-an-open-label-cluster-randomised-trial-and-modelling-study
#13
Mami Taniuchi, Michael Famulare, Khalequ Zaman, Md Jashim Uddin, Alexander M Upfill-Brown, Tahmina Ahmed, Parimalendu Saha, Rashidul Haque, Ananda S Bandyopadhyay, John F Modlin, James A Platts-Mills, Eric R Houpt, Mohammed Yunus, William A Petri
BACKGROUND: Trivalent oral polio vaccine (tOPV) was replaced worldwide from April, 2016, by bivalent types 1 and 3 oral polio vaccine (bOPV) and one dose of inactivated polio vaccine (IPV) where available. The risk of transmission of type 2 poliovirus or Sabin 2 virus on re-introduction or resurgence of type 2 poliovirus after this switch is not understood completely. We aimed to assess the risk of Sabin 2 transmission after a polio vaccination campaign with a monovalent type 2 oral polio vaccine (mOPV2)...
July 7, 2017: Lancet Infectious Diseases
https://www.readbyqxmd.com/read/28690581/corrigendum-psychoacoustics-a-comprehensive-matlab-toolbox-for-auditory-testing
#14
Alessandro Soranzo, Massimo Grassi
[This corrects the article on p. 712 in vol. 5, PMID: 25101013.].
2017: Frontiers in Psychology
https://www.readbyqxmd.com/read/28690432/an-algebra-based-introductory-computational-neuroscience-course-with-lab
#15
Christian G Fink
A course in computational neuroscience has been developed at Ohio Wesleyan University which requires no previous experience with calculus or computer programming, and which exposes students to theoretical models of neural information processing and techniques for analyzing neural data. The exploration of theoretical models of neural processes is conducted in the classroom portion of the course, while data analysis techniques are covered in lab. Students learn to program in MATLAB and are offered the opportunity to conclude the course with a final project in which they explore a topic of their choice within computational neuroscience...
2017: Journal of Undergraduate Neuroscience Education: JUNE: a Publication of FUN, Faculty for Undergraduate Neuroscience
https://www.readbyqxmd.com/read/28690354/a-summary-of-light-dose-distribution-using-an-ir-navigation-system-for-photofrin-mediated-pleural-pdt
#16
Timothy C Zhu, Michele M Kim, Yi-Hong Ong, Rozhin Penjweini, Andreea Dimofte, Jarod C Finlay, Carmen Rodriguez, Keith A Cengel
Uniform delivery of light fluence is an important goal for photodynamic therapy. We present summary results for an infrared (IR) navigation system to deliver light dose uniformly during intracavitory PDT by tracking the movement of the light source and providing real-time feedback on the light fluence rate on the entire cavity surface area. In the current intrapleural PDT protocol, 8 detectors placed in selected locations in the pleural cavity monitor the light doses. To improve the delivery of light dose uniformity, an IR camera system is used to track the motion of the light source as well as the surface contour of the pleural cavity...
January 28, 2017: Proceedings of SPIE
https://www.readbyqxmd.com/read/28689698/improved-fault-ride-through-capability-of-dfig-based-wind-turbines-using-synchronous-reference-frame-control-based-dynamic-voltage-restorer
#17
A Rini Ann Jerin, Palanisamy Kaliannan, Umashankar Subramaniam
Fault ride through (FRT) capability in wind turbines to maintain the grid stability during faults has become mandatory with the increasing grid penetration of wind energy. Doubly fed induction generator based wind turbine (DFIG-WT) is the most popularly utilized type of generator but highly susceptible to the voltage disturbances in grid. Dynamic voltage restorer (DVR) based external FRT capability improvement is considered. Since DVR is capable of providing fast voltage sag mitigation during faults and can maintain the nominal operating conditions for DFIG-WT...
July 6, 2017: ISA Transactions
https://www.readbyqxmd.com/read/28685320/can-laws-be-a-potential-pet-image-texture-analysis-approach-for-evaluation-of-tumor-heterogeneity-and-histopathological-characteristics-in-nsclc
#18
Seyhan Karacavus, Bülent Yılmaz, Arzu Tasdemir, Ömer Kayaaltı, Eser Kaya, Semra İçer, Oguzhan Ayyıldız
We investigated the association between the textural features obtained from (18)F-FDG images, metabolic parameters (SUVmax, SUVmean, MTV, TLG), and tumor histopathological characteristics (stage and Ki-67 proliferation index) in non-small cell lung cancer (NSCLC). The FDG-PET images of 67 patients with NSCLC were evaluated. MATLAB technical computing language was employed in the extraction of 137 features by using first order statistics (FOS), gray-level co-occurrence matrix (GLCM), gray-level run length matrix (GLRLM), and Laws' texture filters...
July 6, 2017: Journal of Digital Imaging: the Official Journal of the Society for Computer Applications in Radiology
https://www.readbyqxmd.com/read/28685045/comprehensive-review-of-the-evidence-regarding-the-effectiveness-of-community-based-primary-health-care-in-improving-maternal-neonatal-and-child-health-7-shared-characteristics-of-projects-with-evidence-of-long-term-mortality-impact
#19
Henry B Perry, Bahie M Rassekh, Sundeep Gupta, Paul A Freeman
BACKGROUND: There is limited evidence about the long-term effectiveness of integrated community-based primary health care (CBPHC) in improving maternal, neonatal and child health. However, the interventions implemented and the approaches used by projects with such evidence can provide guidance for ending preventable child and maternal deaths by the year 2030. METHODS: A database of 700 assessments of the effectiveness of CBPHC in improving maternal, neonatal and child health has been assembled, as described elsewhere in this series...
June 2017: Journal of Global Health
https://www.readbyqxmd.com/read/28684196/force-transmission-through-the-wrist-during-performance-of-push-ups-on-a-hyperextended-and-a-neutral-wrist
#20
Olga Polovinets, Alon Wolf, Ronit Wollstein
STUDY DESIGN: Cross-sectional cohort. INTRODUCTION: Push-ups are used ubiquitously to evaluate and strengthen the upper body. They are usually performed in 1 of 2 main ways: with the wrist in hyperextension and with the wrist in a neutral position. PURPOSE OF THE STUDY: The purpose of our study was to compare the dynamic forces in the wrist during the 2 push-up styles. METHODS: Fourteen volunteers performed push-ups in 2 different patterns: on a hyperextended wrist and a neutral wrist (NW)...
July 3, 2017: Journal of Hand Therapy: Official Journal of the American Society of Hand Therapists
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