keyword
https://read.qxmd.com/read/38623839/computational-exploration-of-naturally-occurring-flavonoids-as-tgf-%C3%AE-inhibitors-in-breast-cancer-insights-from-docking-and-molecular-dynamics-simulations-and-in-vitro-cytotoxicity-study
#1
JOURNAL ARTICLE
Umang Shah, Niyati Patel, Mehul Patel, Shishir Rohit, Nilay Solanki, Ashish Patel, Swayamprakash Patel, Vishwa Patel, Rajvi Patel, Rahul D Jawarkar
Breast cancer is a global health concern, demanding innovative treatments. Targeting the Transforming Growth Factor-beta (TGF-β) signaling pathway, pivotal in breast cancer, is a promising approach. TGF-β inhibits proliferation via G1 phase cell cycle arrest, acting as a suppressor initially, but in later stages, it promotes progression by enhancing motility, invasiveness, and metastasis formation. This study explores naturally occurring flavonoids' interactions with TGF-β. Using molecular docking against the protein's crystal structure (PDB Id: 1PY5), Gossypin showed the highest docking score and underwent molecular dynamics simulation, revealing complex flexibility and explaining how flavonoids impede TGF-β signaling in breast cancer...
April 16, 2024: Chemistry & Biodiversity
https://read.qxmd.com/read/38618280/unveiling-the-mechanism-of-the-chaishao-shugan-formula-against-triple-negative-breast-cancer
#2
JOURNAL ARTICLE
Teng Fan, Yuanyuan Huang, Zeyu Liu, Jinsheng Huang, Bin Ke, Yuming Rong, Huijuan Qiu, Bei Zhang
BACKGROUND: The ChaiShao Shugan Formula (CSSGF) is a traditional Chinese medicine formula with recently identified therapeutic value in triple-negative breast cancer (TNBC). This study aimed to elucidate the underlying mechanism of CSSGF in TNBC treatment. METHODS: TNBC targets were analyzed using R and data were from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The major ingredients and related protein targets of CSSGF were explored via the Traditional Chinese Medicine Systems Pharmacology database, and an ingredient-target network was constructed via Cytoscape to identify hub genes...
2024: Drug Design, Development and Therapy
https://read.qxmd.com/read/38543013/unveiling-the-chemical-composition-bioactive-profile-and-antioxidant-capacity-of-dried-egyptian-jew-s-mallow-stems-as-a-promising-anticancer-agent
#3
JOURNAL ARTICLE
Marwa Rashad Ali, Huda Hassan Ibrahim, Aziza Ali Salah-Eldin
Phytochemicals from waste materials generated by agricultural and industrial processes have become globally significant due to their accessibility and potential effectiveness with few side effects. These compounds have essential implications in both medicine and the economy. Therefore, a quantitative analysis of the phytochemical profile, sugar types, and water-soluble vitamins of dried Corchorus olitorius L."DJMS" extract (dried Jew's mallow stem) was carried out with HPLC. In addition, the chemical composition, TPC, chlorophyll a and b, beta-carotene, and antioxidant effect using DPPH were investigated...
March 20, 2024: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/38519553/lc-ms-ms-and-gc-ms-ms-metabolic-profiling-of-leontodon-hispidulus-in-vitro-and-in-silico-anticancer-activity-evaluation-targeting-hexokinase-2-enzyme
#4
JOURNAL ARTICLE
Noha Mokhtar Abd-El-Aziz, Mohamed Saeed Hifnawy, Rehab Ahmed Lotfy, Inas Youssef Younis
Leontodon hispidulus Boiss is a wild annual plant growing in Egypt. The present study aims for the first time, to evaluate the phytochemical profile of the main secondary metabolites of the optimized ethanolic extract of the plant using Quadrupole Time-of-Flight Liquid chromatography-mass spectrometry and Gas chromatography-mass spectrometry. It also aims to assess the anticancer activity of its different fractions against the prostate carcinoma cell line. Moreover, an in-silico docking study was performed using the Hexokinase-two enzyme...
March 22, 2024: Scientific Reports
https://read.qxmd.com/read/38310567/a-strategy-based-on-bioinformatics-and-machine-learning-algorithms-reveals-potential-mechanisms-of-shelian-capsule-against-hepatocellular-carcinoma
#5
JOURNAL ARTICLE
Xianqiang Zhou, Fang Tan, Suxian Zhang, An'an Wang, Tiansong Zhang
BACKGROUND: Hepatocellular carcinoma (HCC) is a prevalent and life-threatening form of cancer, with Shelian Capsule (SLC), a traditional Chinese medicine (TCM) formulation, being recommended for clinical treatment. However, the mechanisms underlying its efficacy remain elusive. This study sought to uncover the potential mechanisms of SLC in HCC treatment using bioinformatics methods. METHODS: Bioactive components of SLC were obtained from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP), and HCC-related microarray chip data were sourced from the Gene Expression Omnibus (GEO) database...
January 17, 2024: Current Pharmaceutical Design
https://read.qxmd.com/read/38032489/integrating-geo-network-pharmacology-and-in-vitro-assays-to-explore-the-pharmacological-mechanism-of-bruceae-fructus-against-laryngeal-cancer
#6
JOURNAL ARTICLE
Zhongbiao Wu, Zhongyan Zhu, Liyuan Fu
The goal of this study is to look into the pharmacological mechanism of Bruceae Fructus in conjunction with GEO, network pharmacology, and in vitro assays for the treatment of laryngeal cancer to provide theoretical support for its therapeutic use. The active components and matching targets of Bruceae Fructus were retrieved from the TCMSP database, while genes linked with laryngeal cancer were obtained from the GEO, GeneCards, DisGeNET, and DrugBank databases. Besides, the components and targets were supplemented by literatures in PubMed database...
November 30, 2023: Naunyn-Schmiedeberg's Archives of Pharmacology
https://read.qxmd.com/read/37900883/network-pharmacology-analysis-and-machine-learning-models-confirmed-the-ability-of-yishen-huoxue-decoction-to-alleviate-renal-fibrosis-by-inhibiting-pyroptosis
#7
JOURNAL ARTICLE
MinChao Feng, Fang Luo, HuiMin Wu, Yushan Chen, Jinjin Zuo, Xueying Weng, Guozhong Chen, Jian Zhong
PURPOSE: YiShen HuoXue decoction (YSHXD) is a formulation that has been used clinically for the treatment of renal fibrosis (RF) for many years. We aimed to clarify therapeutic effects of YSHXD against RF and potential pharmacological mechanisms. MATERIALS AND METHODS: We used network pharmacology analysis and machine-learning to screen the core components and core targets of YSHXD against RF, followed by molecular docking and molecular dynamics simulations to confirm the reliability of the results...
2023: Drug Design, Development and Therapy
https://read.qxmd.com/read/37883761/the-network-pharmacology-analysis-of-tonifying-yang-formula-for-the-treatment-of-diminished-ovarian-reserve
#8
JOURNAL ARTICLE
Qianwen Ma, Xuanzhu Wu, Dandan Chen, Wei Li, Jianfei Wu, Mingxia Shen, Chenshu Ye, Yong Tan, Qi Guo
BACKGROUND: Diminished ovarian reserve (DOR) can lead to amenorrhea, infertility, and even the development of premature ovarian insufficiency, severely affecting the quality of life for women. Therefore, it is important to determine the main components of Tonifying Yang Formula, analyze the active substances and effective targets for treating DOR using Tonifying Yang Formula, and explore its potential mechanisms of action. OBJECTIVE: The study is aim to determine the main components of Tonifying Yang Formula, analyze the active substances and effective targets for treating DOR using Tonifying Yang Formula, and explore its potential molecular mechanisms of action, providing important theoretical basis for clinical application...
October 27, 2023: Alternative Therapies in Health and Medicine
https://read.qxmd.com/read/37807411/network-pharmacology-molecular-docking-and-experimental-verification-revealing-the-mechanism-of-fule-cream-against-childhood-atopic-dermatitis
#9
JOURNAL ARTICLE
Chang Liu, Yuxin Liu, Yi Liu, Jing Guan, Ying Gao, Ling Ou, Yuenan Qi, Xiaoxi Lv, Jianmin Zhang
BACKGROUND: The Fule Cream (FLC) is an herbal formula widely used for the treatment of pediatric atopic dermatitis (AD), however, the main active components and functional mechanisms of FLC remain unclear. This study performed an initial exploration of the potential acting mechanisms of FLC in childhood AD treatment through analyses of an AD mouse model using network pharmacology, molecular docking technology, and RNA-seq analysis. METHODS: The main bioactive ingredients and potential targets of FLC were collected from the Traditional Chinese Medicine Systems Pharmacology Database (TCMSP) and SwissTargetPrediction databases...
October 2, 2023: Current Computer-aided Drug Design
https://read.qxmd.com/read/37776010/isolation-of-phenolic-compound-from-lawsonia-inermis-and-its-prediction-as-anti-diabetic-agent-using-molecular-docking-and-molecular-dynamic-simulation
#10
JOURNAL ARTICLE
Ida Musfiroh, Mus Ifaya, I Sahidin, Dewi M D Herawati, Ami Tjitraresmi, Syawal Abdurrahman, Muchtaridi Muchtaridi, Nur Kusaira Khairul Ikram
High blood sugar is a defining feature of chronic disease, diabetes mellitus (DM). There are numerous commercially available medications for the treatment of DM. However, managing the patient's glucose levels remain a challenge because of the gradual reduction in beta-cell function and some side effects from the long-term use of various medications. Previous research has shown that the phenolic compound of henna plant ( Lawsonia inermis L.) has the potential as anti-diabetic agent since it is able to suppress the digesting of α-amylase enzyme...
September 29, 2023: Journal of Biomolecular Structure & Dynamics
https://read.qxmd.com/read/37597676/evaluation-of-the-anti-inflammatory-material-basis-of-lagotis-brachystachya-in-hepg2-and-thp-1%C3%A2-cells
#11
JOURNAL ARTICLE
Ji-Xiao Zhu, Min-Xia Guo, Lin Zhou, Li-Tao Yi, Hui-Lian Huang, Hong-Ling Wang, Hong-Yu Cheng
ETHNOPHARMACOLOGICAL RELEVANCE LAGOTIS BRACHYSTACHYA: Maxim is a traditional ethnic medicine commonly used in Tibet. In Tibetan medicine theory, Lagotis brachystachya is mainly used for the treatment of inflammatory related diseases. However, the active components and mechanism of the anti-inflammatory activity of Lagotis brachystachya are not clear. AIM OF THE STUDY: The putative anti-inflammatory active compounds from Lagotis brachystachya Maxim and its anti-inflammation related mechanism involving in the TLR4/MyD88/NF-κB and NLRP3 signaling pathways were investigated...
August 17, 2023: Journal of Ethnopharmacology
https://read.qxmd.com/read/37576692/systemic-pharmacology-reveals-the-potential-targets-and-signaling-mechanisms-in-the-adjuvant-treatment-of-brucellosis-with-traditional-chinese-medicine
#12
JOURNAL ARTICLE
Tianyi Zhao, Yu Zhang, Liangbo Liu, Xingmei Deng, Jia Guo, Shuzhu Cao, Dexin Zhu, Jian Xu, Usevich Vera Nikolaevna, Suleimenov Maratbek, Zhen Wang, Zhihua Sun, Xinli Gu, Hui Zhang
Human brucellosis is one of the world's most common zoonoses, caused by Brucella infection and characterized by induced inflammation, which in severe cases can lead to abortion and sterility in humans and animals. There is growing evidence that traditional Chinese medicine (TCM) is beneficial as an adjunct to the treatment of brucellosis. However, its specific targets of action and molecular mechanisms remain unclear. In this study, a systematic pharmacological approach was applied to demonstrate pharmacological targets, biological functions, and signaling pathways of TCM as an adjunct to the treatment of brucellosis (TCMTB)...
August 8, 2023: ACS Omega
https://read.qxmd.com/read/37556351/anhydroicaritin-suppresses-tumor-progression-via-the-pi3k-akt-signaling-pathway-in-hepatocellular-carcinoma
#13
JOURNAL ARTICLE
Houhong Wang, Wenli Chen, Yayun Cui, Huihui Gong, Amao Tang
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most malignant tumors. The in vitro experiments on the application of Anhydroicaritin (AHI), the active ingredient of Bushen Huayu Decoction, in HCC treatment remain limited, particularly regarding its molecular mechanism. METHODS: The TCMSP platform was used for drug ingredient screening. The GeneCards database and DisGeNET database are used to collect liver cancer targets. PPI network construction of active component-target intersection target was completed with string database...
August 8, 2023: Aging
https://read.qxmd.com/read/37513887/luteolin-protects-pancreatic-%C3%AE-cells-against-apoptosis-through-regulation-of-autophagy-and-ros-clearance
#14
JOURNAL ARTICLE
Ming Han, Yuting Lu, Yunhua Tao, Xinwen Zhang, Chengqiu Dai, Bingqian Zhang, Honghong Xu, Jingya Li
Diabetes, which is mainly characterized by increased apoptosis and dysfunction of beta (β) cells, is a metabolic disease caused by impairment of pancreatic islet function. Previous studies have demonstrated that death-associated protein kinase-related apoptosis-inducing kinase-2 ( Drak2 ) is involved in regulating β cell survival. Since natural products have multiple targets and often are multifunctional, making them promising compounds for the treatment of diabetes, we identified Drak2 inhibitors from a natural product library...
July 7, 2023: Pharmaceuticals
https://read.qxmd.com/read/37308028/research-into-the-anti-pulmonary-fibrosis-mechanism-of-renshen-pingfei-formula-based-on-network-pharmacology-metabolomics-and-verification-of-ampk-ppar-%C3%AE-pathway-of-active-ingredients
#15
JOURNAL ARTICLE
Lu Yan, Min-Yue Jiang, Xin-Sheng Fan
ETHNOPHARMACOLOGICAL RELEVANCE: Idiopathic pulmonary fibrosis (IPF) is a chronic and progressive disease with limited therapy. Renshen Pingfei Formula (RPFF), a classic Chinese medicine derivative formula, has been shown to exert therapeutic effects on IPF. AIM OF THE STUDY: The study aimed to explore the anti-pulmonary fibrosis mechanism of RPFF through network pharmacology, clinical plasma metabolomics, and in vitro experiment. METHODS: Network pharmacology was used to study the holistic pharmacological mechanism of RPFF in the treatment of IPF...
June 10, 2023: Journal of Ethnopharmacology
https://read.qxmd.com/read/37115092/investigation-of-the-mechanism-of-prunella-vulgaris-in-treatment-of-papillary-thyroid-carcinoma-based-on-network-pharmacology-integrated-molecular-docking-and-experimental-verification
#16
JOURNAL ARTICLE
Xiling Zhu, Yan Li, Xiaodong Wang, Yuanshe Huang, Jingxin Mao
To analyze the molecular mechanism of Prunella vulgaris L. (PV) in the treatment of papillary thyroid carcinoma (PTC) by using network pharmacology combined with molecular docking verification. Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform database was used to predict the main active components of PV, Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform, PubChem, and Swiss Target Prediction databases were used to obtain the corresponding targets of all active components...
April 25, 2023: Medicine (Baltimore)
https://read.qxmd.com/read/36995090/identification-of-potential-inhibitor-against-ctx-m-3-and-ctx-m-15-proteins-an-in-silico-and-in%C3%A2-vitro-study
#17
JOURNAL ARTICLE
Bipasa Kar, Chanakya Nath Kundu, Mahender Kumar Singh, Budheswar Dehury, Sanghamitra Pati, Debdutta Bhattacharya
Extended-spectrum beta-lactamase (ESBL) producing Enterobacteriaceae infection is a serious global threat. ESBLs target 3rd generation cephalosporin antibiotics, the most commonly prescribed medicine for gram-negative bacterial infections. As bacteria are prone to develop resistance against market-available ESBL inhibitors, finding a novel and effective inhibitor has become mandatory. Among ESBL, the worldwide reported two enzymes, CTX-M-15 and CTX-M-3, are selected for the present study. CTX-M-3 protein was modeled, and two thousand phyto-compounds were virtually screened against both proteins...
March 30, 2023: Journal of Biomolecular Structure & Dynamics
https://read.qxmd.com/read/36726841/analysis-of-potential-mechanism-of-herbal-formula-taohong-siwu-decoction-against-vascular-dementia-based-on-network-pharmacology-and-molecular-docking
#18
JOURNAL ARTICLE
Ruixin He, Fengjiao He, Zhenliang Hu, Yifang He, Xinting Zeng, Yao Liu, Liang Tang, Ju Xiang, Jianming Li, Binsheng He, Qin Xiang
Vascular dementia (VaD) is the second most prevalent dementia, which is attributable to neurovascular dysfunction. Currently, no approved pharmaceuticals are available. Taohong Siwu decoction (TSD) is a traditional Chinese medicine prescription with powerful antiapoptosis and anti-inflammatory properties. In this study, a network pharmacology approach together with molecular docking validation was used to explore the probable mechanism of action of TSD against VaD. A total of 44 active components, 202 potential targets of components, and 3,613 VaD-related targets including 161 intersecting were obtained...
2023: BioMed Research International
https://read.qxmd.com/read/36642898/-screening-of-traditional-chinese-medicine-derived-snail-control-drug-targets-based-on-network-pharmacology
#19
JOURNAL ARTICLE
T Xiong, J L Guo, F G Lu, J H Liu, T Zheng, J S Li
OBJECTIVE: To screen the targets of traditional Chinese medicine-derived potential plant molluscicides based on network pharmacology and explore the mechanisms of molluscicidal actions. METHODS: The traditional Chinese medicines with molluscicidal actions were screened based on retrospective literature reviews, and their molluscicidal efficiency was summarized. The active ingredients and potential targets of traditional Chinese medicines were captured from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform, Unified Protein Database and literature mining using network pharmacology...
November 22, 2022: Zhongguo Xue Xi Chong Bing Fang Zhi za Zhi, Chinese Journal of Schistosomiasis Control
https://read.qxmd.com/read/36596057/the-mechanism-of-bai-he-gu-jin-tang-against-non-small-cell-lung-cancer-revealed-by-network-pharmacology-and-molecular-docking
#20
JOURNAL ARTICLE
Rui-Fei Xie, Zi-Yu Song, Lu-Yao Xu-Shao, Jin-Ge Huang, Ting Zhao, Zi Yang
BACKGROUND: Non-small cell lung cancer (NSCLC) is a leading cause of cancer-related burden and deaths, thus effective treatment strategies with lower side effects for NSCLC are urgently needed. To systematically analyze the mechanism of Bai He Gu Jin Tang (BHGJT) against NSCLC by network pharmacology and molecular docking. METHODS: The active compounds of BHGJT were obtained by searching the Bioinformatics Analysis Tool for Molecular Mechanism of Traditional Chinese Medicine and Encyclopaedia of Traditional Chinese Medicine...
December 30, 2022: Medicine (Baltimore)
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