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JOURNAL ARTICLE
Anika Tahsin, Mahin Hasan, Saikt Rahman, Mohammad Jubair, Mokibul Hassan Afrad, Manjur Hossain Khan, Md Shaheen Alam, Mst Noorjahan Begum, Md Yeasir Karim, Sharmin Aktar Mukta, Mohammad Tanbir Habib, Ahmed Nawsher Alam, Emran Kabir Chowdhury, Md Rofiqur Rahman, Edward T Ryan, Tahmina Shirin, Mustafizur Rahman, Firdausi Qadri
We report 18 coding-complete genome sequences of emerging SARS-CoV-2 Omicron sub-lineages JN.1, JN.1.4, and JN.1.11 from Bangladesh. Nasopharyngeal swab samples were obtained from individuals with COVID-19 symptoms between December 2023 and January 2024. Whole genome sequencing was performed following the ARTIC Network-based protocol using Oxford Nanopore Technology.
April 24, 2024: Microbiology Resource Announcements
#2
JOURNAL ARTICLE
Mark Milhaven, Heba A Bakry, Anuvi Batra, Amanda M Bermingham, Gloria Grama, Jacob Kebe, Shawn S Martinez, Rishika V Mudunuri, Megan R Nelson, Evie T Nguyen, Mia M Peterson, Alexis Pruitt, Kristan Tran, Akarshi Brar, Gabriella Cerna, Elaine Chaffee, Steven M Caruso, Susanne P Pfeifer
Amabiko is a lytic subcluster BE2 bacteriophage that infects Streptomyces scabiei -a bacterium causing common scab in potatoes. Its 131,414 bp genome has a GC content of 49.5% and contains 245 putative protein-coding genes, 45 tRNAs, and one tmRNA. Amabiko is closely related to Streptomyces bacteriophage MindFlayer (gene content similarity: 86.5%).
April 23, 2024: Microbiology Resource Announcements
#3
JOURNAL ARTICLE
Dana Marchesin-Cupello, Gabriel Roscales, Paula Cobeta, Ruben Chaboy-Cansado, Daniel Aguirre de Cárcer, Alberto Rastrojo
The isolation and characterization of additional phages is crucial for adding reliable viral sequences with relevant biological information to viral databases. In this study, we present the complete genomes of two Arthrobacter phages obtained from different soil samples.
April 23, 2024: Microbiology Resource Announcements
#4
JOURNAL ARTICLE
Loh Michelle JiaMin, Priyadarshini Karthikeyan, Ramesh Kumaresan, Andrew Millard, Sivachandran Parimannan, Heera Rajandas
A lytic bacteriophage EF_RCK infecting Enterococcus faecalis was isolated from a water sample collected in a raw cockle storage container at Taman Ria market, Sungai Petani, Malaysia. The phage has a 57,848-bp double-stranded DNA genome harboring 107 protein-encoding genes and shares 90.9% nucleotide similarity with Enterococcus phage EFKL ( Saphexavirus genus).
April 23, 2024: Microbiology Resource Announcements
#5
JOURNAL ARTICLE
Janet Warg, Mary Lea Killian, Richard Clayton, Angela Cruz
We sequenced the genome of a hirame novirhabdovirus isolate recovered from a white bass ( Morone chrysops ). Hirame novirhabdoviruses are in the genus Novirhabdovirus , along with infectious hematopoietic necrosis virus and viral hemorrhagic septicemia virus. This detection highlights that the full host range of rhabdoviruses in fish is not fully understood.
April 23, 2024: Microbiology Resource Announcements
#6
JOURNAL ARTICLE
Chongjian Jia, Cuiyu Wu, Yingshi Li, Shuhuan Wang, Jinhuan Liu, Jiying Liu, Haimei Su, Xin Tian, Junhui Li
Microbes play a significant role in the cleanup of xenobiotic contaminants. Based on metagenomes derived from long-term enrichment cultures grown on xenobiotic solvents, we report 166 metagenome-assembled genomes, of which 137 are predicted to be more than 90% complete. These genomes broaden the representation of xenobiotic degraders.
April 23, 2024: Microbiology Resource Announcements
#7
JOURNAL ARTICLE
Malissa Grimsley, Jessica Hicks, Patrick Camp, Gleeson Murphy, Teresa Sigafoose
We are reporting a Babesia bovis genome containing four nuclear chromosomes, a mitochondrial genome, and an apicoplast from reference isolate NVSL348. This report includes a gapless assembly consisting of all six genetic molecules.
April 23, 2024: Microbiology Resource Announcements
#8
JOURNAL ARTICLE
Nikola Palevich, Faith P Palevich, Graeme T Attwood, William J Kelly
Butyrivibrio are anaerobic bacteria and members of the family Lachnospiraceae with important roles in fiber digestion in both animals and humans. This report describes the complete genome of Butyrivibrio fibrisolvens type strain D1T (DSM 3071) consisting of a chromosome (CP146963), megaplasmid (pNP243), and small plasmid (pNP21).
April 23, 2024: Microbiology Resource Announcements
#9
JOURNAL ARTICLE
SangJoon Mo
Clostridium butyricum DKU-11, a bacterium has been isolated from the stools of breastfed infants near Cheonan-Asan city, Republic of Korea, and has a genome sequence of 4,630,814 bp. The GC content is 28.7% and a total of 4,137 coding sequences in two contigs.
April 23, 2024: Microbiology Resource Announcements
#10
JOURNAL ARTICLE
Christian L Castro, Oliver Schwengers, Sarah Stahl-Rommel, Hang N Nguyen, Brandon Dunbar, William T Wallace, Sarah L Castro-Wallace
We report four Chitinophaga sp. strains isolated from wastewater collected onboard the International Space Station. Here, we present three finished and one draft genome. Taxonomic ranks established by genome-based analysis indicate that these Chitinophaga sp. strains represent candidates for a new species.
April 23, 2024: Microbiology Resource Announcements
#11
JOURNAL ARTICLE
Josué Rodríguez-Ramos, Carrie D Nicora, Samuel O Purvine, Mikayla A Borton, Bridget B McGivern, David W Hoyt, Mary S Lipton, Kelly C Wrighton
Rivers are critical ecosystems that impact global biogeochemical cycles. Nonetheless, a mechanistic understanding of river microbial metabolisms and their influences on geochemistry is lacking. Here, we announce metaproteomes of river sediments that are paired with metagenomes and metabolites, enabling an understanding of the microbial underpinnings of river respiration.
April 23, 2024: Microbiology Resource Announcements
#12
JOURNAL ARTICLE
Brian I Choi, Melline Fontes Noronha, Jacob Kaindl, Alan J Wolfe
Previously identified under the single designation of Aerococcus urinae , three distinct taxonomic species have been distinguished as Aerococcus loyolae, Aerococcus mictus, and Aerococcus tenax . Here, we present the complete genome sequences of the type strains of these species assembled via a combination of short-read and long-read sequencing techniques.Registered at ClinicalTrials.gov (NCT01166438).
April 23, 2024: Microbiology Resource Announcements
#13
JOURNAL ARTICLE
Arik Hartmann, Kuttichantran Subramaniam, Cody Conrad, Pedro H O Viadanna, Thomas B Waltzek, Ana V Longo
Two ranavirus isolates were recovered from anuran and salamander samples collected during an amphibian mass mortality event in North-Central Florida in 2021. Phylogenetic analyses of the full genomes confirmed that the two isolates were nearly identical and strains of the species Frog virus 3 .
April 23, 2024: Microbiology Resource Announcements
#14
JOURNAL ARTICLE
Manjur Hossain Khan Jony, Ahmed Nawsher Alam, Md Abdullah Omar Nasif, Sharmin Sultana, Rubaid Anwar, Mithun Rudra, Mahbubur Rahman, Mustafizur Rahman, Firdausi Qadri, Tahmina Shirin
We report complete genome sequences of 14 severe acute respiratory syndrome coronavirus 2 Omicron sub-lineage JN.1 obtained from Bangladeshi individuals between 19 December 2023 and 21 January 2024. All sequence data were generated by Oxford Nanopore Sequencing Technology using the amplicon sequencing approach developed by the ARTIC network.
April 23, 2024: Microbiology Resource Announcements
#15
JOURNAL ARTICLE
Kaspar Reier, Aivar Liiv, Jaanus Remme
The expression level of individual proteins varies markedly during the progression of the growth phase in bacteria. A set of proteins was quantified in Escherichia coli total proteome during 14 days of batch cultivation using pulse stable isotope labeled amino acids in cell culture (SILAC)-based quantitative mass spectrometry.
April 23, 2024: Microbiology Resource Announcements
#16
JOURNAL ARTICLE
Divya Rose, Hannah Bennett, Jennifer Dill-Okubo, Ruth Francis-Floyd, Alvin C Camus, Geoffrey C Waldbieser, Matt J Griffin
The complete genome sequence is reported for Vibrio harveyi isolate K2014767, isolated from a captive Caribbean spiny lobster ( Panulirus argus ) during a species-specific mortality event in a public display aquarium in the United States.
April 22, 2024: Microbiology Resource Announcements
#17
JOURNAL ARTICLE
Dominique N Wagner, Vanessa A Varaljay, Wanda J Lyon, Audra L Crouch, Clayton Allex-Buckner, Justin C Biffinger, Wendy J Crookes-Goodson, Nancy Kelley-Loughnane, Blake W Stamps
No abstract text is available yet for this article.
April 22, 2024: Microbiology Resource Announcements
#18
JOURNAL ARTICLE
Hyojung Park, Hye Sun Lee, Jin Hyung Lee, Byoung Seung Jeon
Bacillus sp. KICET-3, isolated from doenjang, a traditional Korean fermented food, has a single chromosomal DNA fragment of 4,616,861 bp, and the G+C content is 45.52%. It is estimated to have 4,450 predicted coding DNA sequences, 84 tRNAs, and 24 rRNAs.
April 22, 2024: Microbiology Resource Announcements
#19
JOURNAL ARTICLE
Saagar M Chokshi, Elizabeth A Odegard, Heidi L Meeds, Steven B Kleiboeker, Assem Ziady, Anthony Sabulski, Sonata Jodele, Alix E Seif, Stella M Davies, Benjamin L Laskin, Jason T Blackard
The role of viral diversity in the pathogenesis of BK polyomavirus (BKPyV)-associated disease is poorly understood. Here, we report near full-length BKPyV genome sequences from two allogeneic hematopoietic cell transplant recipients infected with BKPyV genotype II, which is uncommon in the USA.
April 22, 2024: Microbiology Resource Announcements
#20
JOURNAL ARTICLE
Ruwani L Wimalasekara, Ellen M E Sykes, Dawn White, Chris Rathgeber, Ayush Kumar
We report the whole-genome sequence and antibiotic-resistance gene profile of an Acinetobacter calcoaceticus isolate, designated AC001_UM, taken from soil along the Red River in Winnipeg, Manitoba, Canada. The genome comprised 3,916,544 nucleotides (GC content: 38.7%). Antibiotic-resistance gene analysis revealed a class D β-lactamase and three efflux pump families.
April 18, 2024: Microbiology Resource Announcements
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