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Physical Review. E

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https://www.readbyqxmd.com/read/30011609/mean-field-model-for-the-density-of-states-of-jammed-soft-spheres
#1
Fernanda P C Benetti, Giorgio Parisi, Francesca Pietracaprina, Gabriele Sicuro
We propose a class of mean-field models for the isostatic transition of systems of soft spheres, in which the contact network is modeled as a random graph and each contact is associated to d degrees of freedom. We study such models in the hypostatic, isostatic, and hyperstatic regimes. The density of states is evaluated by both the cavity method and exact diagonalization of the dynamical matrix. We show that the model correctly reproduces the main features of the density of states of real packings and, moreover, it predicts the presence of localized modes near the lower band edge...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011608/equilibrium-and-dynamics-of-strained-islands
#2
Guido Schifani, Thomas Frisch, Médéric Argentina
We focus in this work on the effect of the surface energy anisotropy on an elastically strained semiconductor film and in particular on its role on the coarsening dynamics of elastically strained islands. To study the dynamics of a strained film, we establish a one-dimensional nonlinear and nonlocal partial differential equation which takes into account the elastic, capillary, wetting, and anisotropic effects. We first construct an approximate stationary solution of our model using a variational method and an appropriate ansatz...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011607/long-time-anomalous-swimmer-diffusion-in-smectic-liquid-crystals
#3
Claudia Ferreiro-Córdova, John Toner, Hartmut Löwen, Henricus H Wensink
The dynamics of self-locomotion of active particles in aligned or liquid crystalline fluids strongly deviates from that in simple isotropic media. We explore the long-time dynamics of a swimmer moving in a three-dimensional smectic liquid crystal and find that the mean-square displacement transverse to the director exhibits a distinct logarithmic tail at long times. The scaling is distinctly different from that in an isotropic or nematic fluid and hints at the subtle but important role of the director fluctuation spectrum in governing the long-time motility of active particles...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011606/consistencies-and-inconsistencies-between-model-selection-and-link-prediction-in-networks
#4
Toni Vallès-Català, Tiago P Peixoto, Marta Sales-Pardo, Roger Guimerà
A principled approach to understand network structures is to formulate generative models. Given a collection of models, however, an outstanding key task is to determine which one provides a more accurate description of the network at hand, discounting statistical fluctuations. This problem can be approached using two principled criteria that at first may seem equivalent: selecting the most plausible model in terms of its posterior probability; or selecting the model with the highest predictive performance in terms of identifying missing links...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011605/fluid-mixtures-in-nanotubes
#5
Henri Gouin, Augusto Muracchini, Tommaso Ruggeri
The aim of the paper is the study of fluid mixtures in nanotubes by the methods of continuum mechanics. The model starts from a statistical distribution in mean-field molecular theory and uses a density expansion of Taylor series. We get a continuous expression of the volume free energy with density's spatial derivatives limited at the second order. The nanotubes can be filled with liquid or vapor according to the chemical characteristics of the walls and of liquid or vapor mixture bulks. An example of a two-fluid mixture constituted of water and ethanol inside carbon nanotubes at 20^{∘}C is considered...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011604/energy-transfer-dynamics-in-strongly-inhomogeneous-hot-dense-matter-systems
#6
C R Stillman, P M Nilson, A B Sefkow, S T Ivancic, C Mileham, I A Begishev, D H Froula
Direct measurements of energy transfer across steep density and temperature gradients in a hot-dense-matter system are presented. Hot-dense-plasma conditions were generated by high-intensity laser irradiation of a thin-foil target containing a buried metal layer. Energy transfer to the layer was measured using picosecond time-resolved x-ray emission spectroscopy. The data show two x-ray flashes in time. Fully explicit, coupled particle-in-cell and collisional-radiative atomic kinetics model predictions reproduce these observations, connecting the two x-ray flashes with staged radial energy transfer within the target...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011603/dynamic-phase-transitions-in-the-presence-of-quenched-randomness
#7
Erol Vatansever, Nikolaos G Fytas
We present an extensive study of the effects of quenched disorder on the dynamic phase transitions of kinetic spin models in two dimensions. We undertake a numerical experiment performing Monte Carlo simulations of the square-lattice random-bond Ising and Blume-Capel models under a periodically oscillating magnetic field. For the case of the Blume-Capel model we analyze the universality principles of the dynamic disordered-induced continuous transition at the low-temperature regime of the phase diagram. A detailed finite-size scaling analysis indicates that both nonequilibrium phase transitions belong to the universality class of the corresponding equilibrium random Ising model...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011602/magnetosonic-waves-in-a-quantum-plasma-with-arbitrary-electron-degeneracy
#8
Fernando Haas, Shahzad Mahmood
Using a two-species quantum hydrodynamic model, we derive the quantum counterpart of magnetosonic waves, in a plasma with arbitrary degree of degeneracy and taking into account quantum diffraction effects due to the matter-wave character of the charge carriers. The weakly nonlinear aspects of the associated quantum magnetosonic wave are accessed by means of perturbation theory, with the derivation of a nonlinear evolution equation admitting solitons, namely, the Korteweg-de Vries equation. The degeneracy and quantum diffraction effects on soliton propagation are determined...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011601/marginal-process-framework-a-model-reduction-tool-for-markov-jump-processes
#9
Leo Bronstein, Heinz Koeppl
Markov jump process models have many applications across science. Often these models are defined on a state space of product form and only one of the components of the process is of direct interest. In this paper we extend the marginal process framework, which provides a marginal description of the component of interest, to the case of fully coupled processes. We use entropic matching to obtain a finite-dimensional approximation of the filtering equation, which governs the transition rates of the marginal process...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011600/curvature-corrections-to-the-nonlocal-interfacial-model-for-short-ranged-forces
#10
José M Romero-Enrique, Alessio Squarcini, Andrew O Parry, Paul M Goldbart
In this paper we revisit the derivation of a nonlocal interfacial Hamiltonian model for systems with short-ranged intermolecular forces. Starting from a microscopic Landau-Ginzburg-Wilson Hamiltonian with a double-parabola potential, we reformulate the derivation of the interfacial model using a rigorous boundary integral approach. This is done for three scenarios: a single fluid phase in contact with a nonplanar substrate (i.e., wall); a free interface separating coexisting fluid phases (say, liquid and gas); and finally a liquid-gas interface in contact with a nonplanar confining wall, as is applicable to wetting phenomena...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011599/unified-biophysical-mechanism-for-cell-shape-oscillations-and-cell-ingression
#11
Wei-Chang Lo, Craig Madrak, Daniel P Kiehart, Glenn S Edwards
We describe a mechanochemical and percolation cascade that augments myosin's regulatory network to tune cytoskeletal forces. Actomyosin forces collectively generate cytoskeletal forces during cell oscillations and ingression, which we quantify by elastic percolation of the internally driven, cross-linked actin network. Contractile units can produce relatively large, oscillatory forces that disrupt crosslinks to reduce cytoskeletal forces. A (reverse) Hopf bifurcation switches contractile units to produce smaller, steady forces that enhance crosslinking and consequently boost cytoskeletal forces to promote ingression...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011598/synchronization-and-entrainment-of-metapopulations-a-trade-off-among-time-induced-heterogeneity-dispersal-and-seasonal-force
#12
Ramesh Arumugam, Partha Sharathi Dutta
Demographic and environmental heterogeneities are prevalent across many natural systems. Earlier studies on metapopulation models have mostly considered heterogeneities either in the demographic parameters or in the interaction strength and topology between the spatially separated patches. In contrast, here we study the dynamics of a metapopulation model where each of the uncoupled patches has different periods of oscillations (period mismatch). We show different synchronization dynamics governed by both period mismatch and dispersal in neighboring patches...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011597/comment-on-spectral-analysis-of-deformed-random-networks
#13
Sherif M Abuelenin, Adel Y Abul-Magd
We comment on the findings presented in [Phys. Rev. E 80, 046101 (2009)10.1103/PhysRevE.80.046101] concerning the spacing distribution of the spectrum of sparsely connected random networks. We point out that for clustered networks without any connection among them the spacing distribution is not described by Poisson but rather by a superposition of multiple Gaussian orthogonal ensemble (GOE) statistics. Therefore, the spacing distribution for a network having two dense subnetworks with few connections between the two subnetworks follows a transition from two-GOE to a GOE statistics and not as the article suggests a transition from Poisson statistics to the GOE...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011596/hysteresis-in-the-ising-model-with-glauber-dynamics
#14
Prabodh Shukla
We use Glauber dynamics to study time and temperature dependence of hysteresis in the pure (without quenched disorder) Ising model on cubic, square, honeycomb lattices as well as random graphs. Results are discussed in the context of more extensive studies of hysteresis in the random field Ising model.
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011595/lieb-robinson-bound-at-finite-temperatures
#15
Zhiqiang Huang, Xiao-Kan Guo
The Lieb-Robinson bound shows that the speed of propagating information in a nonrelativistic quantum lattice system is bounded by a finite velocity, which entails the clustering of correlations. In this paper, we extend the Lieb-Robinson bound to quantum systems at finite temperature by calculating the dynamical correlation function at nonzero temperature for systems whose interactions are, respectively, short range, exponentially decaying, and long range. We introduce a simple way of counting the clusters in a cluster expansion by using the combinatoric generating functions of graphs...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011594/symmetrized-operator-split-schemes-for-force-and-source-modeling-in-cascaded-lattice-boltzmann-methods-for-flow-and-scalar-transport
#16
Farzaneh Hajabdollahi, Kannan N Premnath
Operator split forcing schemes exploiting a symmetrization principle, i.e., Strang splitting, for cascaded lattice Boltzmann (LB) methods in two- and three-dimensions for fluid flows with impressed local forces are presented. Analogous scheme for the passive scalar transport represented by a convection-diffusion equation with a source term in a novel cascaded LB formulation is also derived. They are based on symmetric applications of the split solutions of the changes on the scalar field or fluid momentum due to the sources or forces over half time steps before and after the collision step...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011593/driven-widom-rowlinson-lattice-gas
#17
Ronald Dickman, R K P Zia
In the Widom-Rowlinson lattice gas, two particle species (A, B) diffuse freely via particle-hole exchange, subject to both on-site exclusion and prohibition of A-B nearest-neighbor pairs. As an athermal system, the overall densities are the only control parameters. As the densities increase, an entropically driven phase transition occurs, leading to ordered states with A- and B-rich domains separated by hole-rich interfaces. Using Monte Carlo simulations, we analyze the effect of imposing a drive on this system, biasing particle moves along one direction...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011592/harnessing-energy-sharing-collisions-of-manakov-solitons-to-implement-universal-nor-and-or-logic-gates
#18
M Vijayajayanthi, T Kanna, K Murali, M Lakshmanan
The energy-sharing collision of bright optical solitons in the Manakov system, governing pulse propagation in high birefringent fiber, is employed theoretically to realize optical logic gates. In particular, we successfully construct (theoretically) the universal NOR gate and the OR gate from the energy-sharing collisions of just four bright solitons which can be well described by the exact bright four-soliton solution of the Manakov system. This construction procedure has important merits such as realizing the two input gates with a minimal number of soliton collisions and possibilities of multistate logic...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011591/orientation-of-plastic-rearrangements-in-two-dimensional-model-glasses-under-shear
#19
Alexandre Nicolas, Jörg Rottler
The plastic deformation of amorphous solids is mediated by localized shear transformations involving small groups of particles rearranging irreversibly in an elastic background. We introduce and compare three different computational methods to extract the size and orientation of these shear transformations in simulations of a two-dimensional athermal model glass under simple shear. We find that the shear angles are broadly distributed around the macroscopic shear direction, with a more or less Gaussian distribution with a standard deviation of around 20^{∘}...
June 2018: Physical Review. E
https://www.readbyqxmd.com/read/30011590/general-formulation-of-long-range-degree-correlations-in-complex-networks
#20
Yuka Fujiki, Taro Takaguchi, Kousuke Yakubo
We provide a general framework for analyzing degree correlations between nodes separated by more than one step (i.e., beyond nearest neighbors) in complex networks. One joint and four conditional probability distributions are introduced to fully describe long-range degree correlations with respect to degrees k and k^{'} of two nodes and shortest path length l between them. We present general relations among these probability distributions and clarify the relevance to nearest-neighbor degree correlations. Unlike nearest-neighbor correlations, some of these probability distributions are meaningful only in finite-size networks...
June 2018: Physical Review. E
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