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HLA

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https://www.readbyqxmd.com/read/28941324/two-novel-alleles-hla-a-02-643n-and-hla-b-53-44-identified-in-brazilian-individuals
#1
E M G Vale, E Nascimento, C K F Oliveira, M F Lasmar, R A Fabreti-Oliveira
Two novel alleles, HLA-A*02:643N and HLA-B*53:44, generated by different mechanisms, were identified in Brazilian individuals.
September 23, 2017: HLA
https://www.readbyqxmd.com/read/28892257/candidate-gene-molecular-markers-as-tools-for-analyzing-genetic-susceptibility-to-morbillivirus-infection-in-stranded-cetaceans
#2
Karla Stejskalova, Zuzana Bayerova, Jan Futas, Kristyna Hrazdilova, Marie Klumplerova, Jan Oppelt, Petra Splichalova, Giovanni Di Guardo, Sandro Mazzariol, Cristina Esmeralda Di Francesco, Gabriella Di Francesco, Giuliana Terracciano, Romulus-Marian Paiu, Teodor Dan Ursache, David Modry, Petr Horin
Morbilliviruses, such as Cetacean morbillivirus (CeMV) or Phocine distemper virus (PDV), represent a growing threat for marine mammals on both hemispheres. Since free-ranging animal populations strongly rely on natural resistance mechanisms, innate immunity related genes and virus cell entry receptor genes may represent key factors involved in susceptibility to CeMV in Cetaceans. Using the next generation sequencing technology, we have sequenced eleven candidate genes in two model species, Stenella coeruleoalba and Phocoena phocoena...
September 11, 2017: HLA
https://www.readbyqxmd.com/read/28885768/characterization-of-the-novel-hla-drb1-13-241-allele-by-sequencing-based-typing
#3
Li-Qun Zhang, Xiao-Yang Zhou, Yao Xiao, Jian-Ping Cai
HLA-DRB1*13:241 differs from HLA-DRB1*13:02:01 by one nucleotide substitution at position 335.
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28884973/a-novel-multiplex-pcr-assay-for-detection-of-both-hla-a-31-01-hla-b-15-02-alleles-which-confer-susceptibility-to-carbamazepine-induced-severe-cutaneous-adverse-reactions
#4
Dinh Van Nguyen, Christopher Vidal, Hieu Chi Chu, Nga Thi Quynh Do, Richard Fulton, Jamma Li, Suran L Fernando
HLA-A*31:01 and HLA-B*15:02 have been widely reported to confer genetic susceptibility to carbamazepine-induced severe cutaneous adverse reactions. Accordingly, the screening for these alleles has been highly recommended to prevent SCAR prior to introducing CBZ therapy. Although a number of methods are available for screening of HLA-A*31:01 or HLA-B*15:02 alleles separately, developing an assay that can detect both these alleles would be more clinically practical, cost-effective and less time-consuming. Therefore, in this study, a multiplex PCR using Taq°Man Probe was designed and validated to be able to detect HLA-A*31:01 and HLA-B*15:02...
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28884963/identification-of-hla-b-58-01-21-a-novel-allele-in-a-korean-individual
#5
Jun Hyung Lee, Hyun-Jung Choi, Soo-Hyun Kim, Myung-Geun Shin
statement B*58:01:21 has a single nucleotide change, c.264A>G (ACA→ACG at codon 88) compared to B*58:01:01:01.
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28884955/hla-b-40-302-a-novel-allele-identified-by-sequence-based-typing-in-a-korean-individual
#6
Jun Hyung Lee, Jisu Im, Hyun-Jung Choi, Soo-Hyun Kim, Myung-Geun Shin
statement: B*40:302 differs from B*40:02:01:01 by a single non-synonymous nucleotide substitution at codon 81 (CCG→CTG).
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28884944/characterization-of-the-novel-hla-a-02-07-10-allele-by-sequencing-based-typing
#7
Li-Qun Zhang, Xiao-Yang Zhou, Yao Xiao, Jian-Ping Cai
HLA-A*02:07:10 differs from HLA-A*02:07:01 by one nucleotide substitution at position 117.
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28884941/characterization-of-the-novel-hla-dqb1-05-155-allele-by-sequencing-based-typing
#8
Li-Qun Zhang, Xiao-Yang Zhou, Yao Xiao, Jian-Ping Cai
HLA-DQB1*05:155 differs from HLA-DQB1*05:01:01 by one nucleotide substitution at position 474 (G > C).
September 8, 2017: HLA
https://www.readbyqxmd.com/read/28873285/a-new-allele-hla-dqa1-02-01-02
#9
T Galluccio, A Guagnano, G Stanglino, T Vicenza, M Andreani
The new allele HLA-DQA1*02:01:02 differs from DQA1*02:01:01:01by C to T substitution in exon 2.
September 5, 2017: HLA
https://www.readbyqxmd.com/read/28858436/genomic-sequences-of-two-novel-hla-c-alleles-hla-c-15-143-and-hla-c-07-109-02
#10
A Balas, F García-Sánchez, R Alenda, J L Vicario
Two novel HLA-C alleles, C*07:109:02 and C*15:143, were characterized in two Spanish individuals.
August 31, 2017: HLA
https://www.readbyqxmd.com/read/28858431/hla-b-67-01-03-a-hla-novel-allele-identified-in-a-chinese-platelet-donor
#11
X-F Li, Y Liu, X Zhang, F-Q Lin, J-P Li
HLA-B*67:01:03 has one synonymous nucleotide change from HLA-B*67:01:02 at nucleotide 873 (codon 267 Proline).
August 31, 2017: HLA
https://www.readbyqxmd.com/read/28846214/identification-of-a-novel-allele-hla-a-02-01-131-by-full-length-genomic-sequencing
#12
Y Park, H Kim, J Im, C E Yoon, H S Kim
The HLA-A*02:01:131 allele differs by a single nucleotide at codon 236 compared with HLA-A*02:01:01:01.
August 28, 2017: HLA
https://www.readbyqxmd.com/read/28846202/hla-a-33-74n-a-novel-hla-a-33-variant-identified-by-sequence-based-typing-in-a-taiwanese-individual
#13
C Y Lin, C L Chang
A one nucleotide replacement in codon 803 of HLA-A*33:03:01 results in a novel allele, HLA-A*33:74 N.
August 28, 2017: HLA
https://www.readbyqxmd.com/read/28846201/identification-of-a-new-hla-b-51-226-allele-in-a-chinese-bone-marrow-related-donor
#14
Y-N Li, Z-H Feng, W-H Ma, H-Y Wang
HLA-B*51:226 was initially identified in a Chinese related donor for stem cell transplantation.
August 28, 2017: HLA
https://www.readbyqxmd.com/read/28842952/sequence-based-typing-of-a-novel-hla-drb1-allele-hla-drb1-14-32-03-in-a-chinese-individual
#15
Jian-Ping Li, Xu Zhang, Feng-Qiu Lin, Yan-Hong Dong, Xiao-Feng Li
HLA-DRB1*14:32:03 has one synonymous nucleotide change from HLA-DRB1*14:32:02 at nucleotide 303 (codon 72 Arginine).
August 25, 2017: HLA
https://www.readbyqxmd.com/read/28842944/high-throughput-next-generation-sequencing-to-genotype-six-classical-hla-loci-from-96-donors-in-a-single-miseq-run
#16
P K Ehrenberg, A Geretz, R K Sindhu, T Vayntrub, M A Fernández Viña, R Apps, N L Michael, R Thomas
Next generation sequencing (NGS) methods have been established as an efficient approach for HLA typing because unlike traditional Sanger sequencing, they provide unambiguous results at a reasonable cost. We previously developed a multi-locus index method to genotype four HLA loci (A, B, C, and DRB1) on the Illumina MiSeq platform. We have now expanded this method to include two additional loci, HLA-DPB1 and DQB1. Contiguous full-length amplicons from 5'UTR through 3'UTR regions were generated using one long-range PCR reaction per locus for each of the six loci from 96 individuals of different ethnicities...
August 25, 2017: HLA
https://www.readbyqxmd.com/read/28837267/sequence-identification-serological-reactivity-and-family-genetics-of-a-novel-hla-alelle-hla-a-26-82
#17
C Zhu, X Nie, Y Song, Y Zhang, W Qiao
HLA-A*26:82 was identified by sequence-based typing and showed the serological specificity of A26.
August 24, 2017: HLA
https://www.readbyqxmd.com/read/28800212/abo-blood-group-phenotype-frequency-estimation-using-molecular-phenotyping-in-rhesus-and-cynomolgus-macaques
#18
S Kanthaswamy, J Ng, R Oldt, L Valdivia, P Houghton, D G Smith
A much larger sample (N = 2369) was used to evaluate a previously reported distribution of the A, AB and B blood group phenotypes in rhesus and cynomolgus macaques from six different regional populations. These samples, acquired from 15 different breeding and research facilities in the US, were analyzed using a real-time quantitative polymerase chain reaction (qPCR) assay that targets single nucleotide polymorphisms (SNPs) responsible for the macaque A, B and AB phenotypes. The frequency distributions of blood group phenotypes of the two species differ significantly from each other, and significant regional differentiation within the geographic ranges of each species was also observed...
August 11, 2017: HLA
https://www.readbyqxmd.com/read/28796439/a-novel-analysis-strategy-for-hla-typing-using-a-sequence-specific-oligonucleotide-probe-method
#19
Dong Il Won
BACKGROUND: The technique of reverse sequence-specific oligonucleotide probes (SSOPs) is commonly used in HLA typing. In the conventional method for data analysis (exact pattern matching, EPM), the larger is the number of mismatched probes, the longer the time for final typing assignment. A novel strategy, filtering and scoring (FnS), has been developed to easily assign the best-fit allele pair. MATERIALS AND METHODS: In the FnS method, candidate alleles and allele pairs were filtered based on a 1) subject's ethnicity, and 2) the measured partial reaction pattern with only definitely negative or positive probes...
August 10, 2017: HLA
https://www.readbyqxmd.com/read/28796435/a-variant-of%C3%A2-hla-drb1-11-hla-drb1-11-143-discovered-in-a-chinese-hematopoietic-stem-cell-donor
#20
Xiao-Feng Li, Gui-Ji Li, Xu Zhang, Hua Fan, Jian-Ping Li
HLA-DRB1*11:143 has one nucleotide change from HLA-DRB1*11:01:01 where Aspartic Acid (70) is changed to Glycine.
August 10, 2017: HLA
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