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New Microbes and New Infections

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https://www.readbyqxmd.com/read/28070338/-pseudomonas-saudiphocaensis-sp-nov-a-new-bacterial-species-isolated-from-currency-notes-collected-during-the-hajj-pilgrimage-in-2012-at-makkah-saudi-arabia
#1
E I Azhar, A Papadioti, F Bibi, A M Ashshi, D Raoult, E Angelakis
We report here the main characteristics of 'Pseudomonas saudiphocaensis' strain 20_BN(T) (CSUR P1224), a new species of the Pseudomonas genus that was isolated from currency notes collected during the Hajj pilgrimage in 2012 at Makkah, Saudi Arabia.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28070337/-jeotgalicoccus-saudimassiliensis-sp-nov-a-new-bacterial-species-isolated-from-air-samples-in-the-urban-environment-of-makkah-saudi-arabia
#2
A Papadioti, E I Azhar, F Bibi, A Jiman-Fatani, S M Aboushoushah, M Yasir, D Raoult, E Angelakis
We report here the main characteristics of 'Jeotgalicoccus saudimassiliensis' strain 13MG44_air(T) (CSUR P1221), a new species of the Jeotgalicoccus genus that was isolated from air samples in the city environment of Makkah, Saudi Arabia, during the pilgrim period of Hajj 2012.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28070336/noncontiguous-finished-genome-sequence-and-description-of-prevotella-phocaeensis-sp-nov-a-new-anaerobic-species-isolated-from-human-gut-infected-by-clostridium-difficile
#3
P Afouda, S Ndongo, S Khelaifia, N Labas, F Cadoret, F Di Pinto, J Delerce, D Raoult, M Million
Prevotella phocaeensis sp. nov. strain SN19(T) (= DSM 103364) is a new species isolated from the gut microbiota of patient with colitis due to Clostridium difficile. Strain SN19(T) is Gram-negative rod-shaped bacteria, strictly anaerobic, nonmotile and non-endospore forming. The predominance fatty acid is hexadecanoic acid. Its 16S rRNA showed a 97.70% sequence identity with its phylogenetically closest species, Prevotella oralis. The genome is 2 922 117 bp long and contains 2486 predicted genes including 56 RNA genes...
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28070335/prevalence-and-diversity-of-chlamydiales-and-other-amoeba-resisting-bacteria-in-domestic-drinking-water-systems
#4
J Lienard, A Croxatto, A Gervaix, Y Lévi, J-F Loret, K M Posfay-Barbe, G Greub
A growing number of human infections incriminate environmental bacteria that have evolved virulent mechanisms to resist amoebae and use them as a replicative niche. These bacteria are designated amoeba-resisting bacteria (ARB). Despite the isolation of these ARB in various human clinical samples, the possible source of infection remains undetermined in most cases. However, it is known that the ARB Legionella pneumophila, for instance, causes a respiratory infection in susceptible hosts after inhalation of contaminated water aerosols from various sources...
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28070334/-arcobacter-porcinus-sp-nov-a-novel-arcobacter-species-uncovered-by-arcobacter-thereius
#5
M J Figueras, A Pérez-Cataluña, N Salas-Massó, A Levican, L Collado
Arcobacter thereius is a species associated with human disease. A group of A. thereius pork strains (represented by strain LMG 24487) clustered separately from the type strain (LMG 24486(T)) in the 16S rRNA and multilocus phylogenetic trees. In silico DNA-DNA hybridization and average nucleotide identity results between their genomes (93.3 and 51.1%) confirmed 'Arcobacter porcinus' (LMG 24487(T)) as a new species.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28053707/taxonogenomics-and-description-of-vaginella-massiliensis-gen-nov-sp-nov-strain-marseille-p2517-t-a-new-bacterial-genus-isolated-from-the-human-vagina
#6
K Diop, F Bretelle, C Michelle, M Richez, J Rathored, D Raoult, P-E Fournier, F Fenollar
An obligate aerobic, Gram-negative, nonmotile and nonsporulating rod designated Marseille P2517 was isolated from the vaginal flora. We describe its features, annotate the genome and compare it to the closest species. The 16S rRNA analysis shows 93.03% sequence similarity with Weeksella virosa, the phylogenetically closest species. Its genome is 2 434 475 bp long and presents 38.16% G+C. On the basis of these data, it can be considered as a new genus in the Flavobacteriaceae family, for which we proposed the name Vaginella massiliensis gen...
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28053706/-bacillus-massiliglaciei-a-new-bacterial-species-isolated-from-siberian-permafrost
#7
P Afouda, G Dubourg, F Cadoret, P-E Fournier, D Raoult
We describe here the main characteristics of a new species isolated from Siberian permafrost dated around 10 million years. This species was named 'Bacillus massiliglaciei' strain Marseille-P2600(T) (= CSUR P2600 = DSM 102861).
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28053705/first-report-of-human-infection-due-to-streptococcus-devriesei
#8
P Tammaro, N Richard, B Andre, A Andremont, H Mammeri
So far, Streptococcus devriesei, which belongs to the mutans streptococci group, has been incriminated in the formation of caries in Equidae. We report the first human infection due to this species in a 54-year-old man with gangrenous cholecystitis. The patient was treated successfully by cholecystectomy and ceftriaxone.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28053704/-mobilibacterium-massiliense-gen-nov-and-mobilibacterium-timonense-sp-%C3%A2-nov-identified-in-a-human-stool-specimen
#9
M Bilen, S Ndongo, F Cadoret, G Dubourg, Z Daoud, P-E Fournier, D Raoult
This study presents the main characteristics of 'Mobilibacterium massiliense' strain P2510 (CSUR P2510) and 'Mobilibacterium timonense' strain P3194 (CSUR P3194), isolated from a stool sample of a patient at the Timone hospital and from a stool sample of a healthy 50-year-old pygmy (Baka) woman, respectively.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28053703/rubeoparvulum-massiliense-gen-nov-sp-nov-a-new-bacterial-genus-isolated-from-the-human-gut-of-a-senegalese-infant-with-severe-acute-malnutrition
#10
M Tidjani Alou, J Rathored, J-C Lagier, S Khelaifia, C Michelle, C Sokhna, A Diallo, A B Diallo, P-E Fournier, D Raoult, S Edouard
Rubeoparvulum massiliense strain mt6(T) was isolated from the gut microbiota of a severely malnourished boy from Senegal and consisted of facultative anaerobic, spore-forming, nonmotile and Gram-negative rods. R. massiliense showed a 92% similarity with the 16S rRNA of Bacillus mannanilyticus. The genome of strain mt6(T) is 2 843 796 bp long with a 43.75% G+C content. It contains 2735 protein-coding genes and 76 RNA genes, among which are nine rRNA genes.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28050253/-merdibacter-massiliensis-gen-nov-sp-nov-isolated-from-human-ileum
#11
D Ricaboni, M Mailhe, F Cadoret, V Vitton, P-E Fournier, D Raoult, J-C Lagier
We report here the main characteristics of 'Merdibacter massiliensis' strain Marseille-P3254(T) (= CSUR P3254 = DSM 103475), which was isolated from human ileum.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28050252/noncontiguous-finished-genome-sequence-and-description-of-streptococcus-timonensis-sp-nov-isolated-from-the-human-stomach
#12
D Ricaboni, M Mailhe, J-C Lagier, C Michelle, N Armstrong, F Bittar, V Vitton, A Benezech, D Raoult, M Million
Strain Marseille-P2915(T), a Gram-positive, facultative anaerobic and nonmotile coccus, was isolated from the gastric lavage of a patient with severe anaemia. The 16S rRNA and rpoB gene comparison exhibited a sequence identity of 98.7 and 92.6% with Streptococcus infantis strain JCM 10157(T), respectively, collocating it within the 'Streptococcus mitis' group. On the basis of phenotypic and genomic analysis, we propose the validation of the type strain Streptococcus timonensis sp. nov. Marseille-P2915T (= DSM 103349 = CSUR P2915)...
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28050251/-aeromonas-intestinalis-and-aeromonas-enterica-isolated-from-human-faeces-aeromonas-crassostreae-from-oyster-and-aeromonas-aquatilis-isolated-from-lake-water-represent-novel-species
#13
M J Figueras, F Latif-Eugenín, F Ballester, I Pujol, D Tena, K Berg, M J Hossain, R Beaz-Hidalgo, M R Liles
Four Aeromonas strains from clinical and environmental samples differed from known species on the basis of rpoD gene sequence. Multilocus phylogenetic analysis and in silico DNA-DNA hybridization confirmed them as four new species even though their 16S rRNA gene sequence similarity with their closest relatives was >98.7%, as occurred for other Aeromonas spp.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28050250/bacillus-cereus-bacteraemia-comparison-between-haematologic-and-nonhaematologic-patients
#14
S Tusgul, G Prod'hom, L Senn, R Meuli, P-Y Bochud, S G Giulieri
Bacillus cereus bacteraemia can be severe, especially among patients with haematologic malignancy. We retrospectively reviewed first episodes of true B. cereus bacteraemia (more than one positive bottle plus signs of infection) at our institution between 1997 and 2013 with the aim to compare haematologic versus nonhaematologic patients and analyse episodes with complicated outcome. Among 56 episodes of positive-blood cultures for B. cereus, 21 were considered significant. Median age was 54 years (range 23-82 years)...
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28050249/-congobacterium-massiliense-gen-nov-sp-nov-a-new-bacterium-isolated-from-the-gut-of-a-pygmy-baka-woman
#15
M Bilen, F Cadoret, Z Daoud, P E Fournier, D Raoult
We report the main characteristics of a new genus, 'Congobacterium,' and a new species, 'Congobacterium massiliense,' strain Marseille-P3295 (CSUR P3295), a new member in the order Coribacteriacea, which was isolated from a stool sample of a healthy 50-year-old pygmy (Baka) woman.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28018604/-acidaminococcus-timonensis-sp-nov-and-acidaminococcus-massiliensis-sp-nov-isolated-from-human-gut
#16
D Ricaboni, M Mailhe, A Benezech, F Cadoret, P-E Fournier, D Raoult
We report here the main characteristics of 'Acidaminococcus timonensis' strain Marseille-P2764(T), isolated from human right colon, and 'Acidaminococcus massiliensis' strain Marseille-P2828(T), isolated from human duodenum.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/28018603/draft-genome-sequence-of-a-human-associated-isolate-of-haloferax-alexandrinus-strain-arc-hr-an-extremely-halophilic-archaea
#17
S Khelaifia, A Caputo, F Djossou, D Raoult
We report the draft genome sequence of Haloferax alexandrinus strain Arc-hr (CSUR P798), isolated from the human gut of a 10-year-old Amazonian individual. Its 3 893 626 bp genome exhibits a 66.00% GC content. The genome of the strain Arc-hr contains 37 genes identified as ORFans, seven genes associated to halocin and 11 genes associated with polyketide synthases or nonribosomal peptide synthetases.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/27994877/-halomonas-saudii-sp-nov-a-new-bacterial-species-isolated-from-marine-plant-halocnemum-strobilaceum
#18
F Bibi, M Yasir, S A Alvi, E I Azhar, A A K Al-Ghamdi, A M Abuzenadah, D Raoult, E Angelakis
We report here the main characteristics of 'Halomonas saudii' strain Saudii DR2 (CSUR P2512), a new species of the Halomonas genus that was isolated from a rhizosphere of Halocnemum strobilaceum in April 2015.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/27942387/-libanicoccus-massiliensis-gen-nov-sp-nov-a-new-bacterium-isolated-from-a-stool-sample-from-a-pygmy-woman
#19
M Bilen, F Cadoret, P-E Fournier, Z Daoud, D Raoult
This study supports the main characteristics of a new genus "Libanicoccus massiliensis" strain Marseille-P3237 (CSURP3237); a new member of the order Coribacteriaceae that was isolated from a stool sample from a healthy 35-year-old pygmy woman.
January 2017: New Microbes and New Infections
https://www.readbyqxmd.com/read/27942386/are-patients-with-pulmonary-tuberculosis-who-are-identified-through-active-case-finding-in-the-community-different-than-those-identified-in-healthcare-facilities
#20
S T Abdurrahman, L Lawson, M Blakiston, J Obasanya, M A Yassin, R M Anderson, O Oladimeji, A Ramsay, L E Cuevas
The lack of healthcare access contributes to large numbers of tuberculosis (TB) cases being missed and has led to renewed interest in outreach approaches to increase detection. It is however unclear whether outreach activities increase case detection or merely identify patients before they attend health facilities. We compared adults with cough of >2 weeks' duration recruited in health facilities (1202 participants) or in urban slums (2828 participants) in Nigeria. Participants provided demographic and clinical information and were screened using smear microscopy...
January 2017: New Microbes and New Infections
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