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Genome Announcements

Jeremiah Seni, Stephen E Mshana, Felician Msigwa, Mecky Matee, Humphrey Mazigo, Julian Parkhill, Mark A Holmes, Gavin K Paterson
We report here the draft genome sequence of a Staphylococcus lentus isolate, 050AP, collected in Tanzania from a swab of healthy bovine perineum. The draft genome sequence contained 2.72 Mbp and 2,750 coding sequences with a G+C content of 31.7%.
December 1, 2016: Genome Announcements
Claudia Carolina Carbonari, Nahuel Fittipaldi, Sarah Teatero, Taryn B T Athey, Luis Pianciola, Marcelo Masana, Roberto G Melano, Marta Rivas, Isabel Chinen
Shiga toxin-producing Escherichia coli strains are worldwide associated with sporadic human infections and outbreaks. In this work, we report the availability of high-quality draft whole-genome sequences for 19 O157:H7 strains isolated in Argentina.
December 1, 2016: Genome Announcements
Frank R Bengelsdorf, Anja Poehlein, Bettina Schiel-Bengelsdorf, Rolf Daniel, Peter Dürre
Butyribacterium methylotrophicum DSM 3468(T) is an acetogenic methylotrophic, anaerobic, carbon monoxide-oxidizing bacterium that produces acetate, butyrate, and butanol. The genome consists of a single chromosome (4.3 Mb) and harbors 3,989 predicted protein-encoding genes.
December 1, 2016: Genome Announcements
Flávio Augusto Cardozo, Nadia Catalina Alfonso Vargas, Cristina Kraemer Zimpel, Adalberto Pessoa, Irma Nelly Gutierrez Rivera
We report here the draft genome sequence of Aeromonas caviae CH129, a marine-derived bacterium isolated from the coast of São Paulo state, Brazil. Genomic analysis revealed genes encoding enzymes involved in binding, transport, and chitin metabolism and different virulence-associated factors.
December 1, 2016: Genome Announcements
Udo Wegmann, Alexander Goesmann, Simon R Carding
The complete genome sequence of Bacteroides ovatus V975 was determined. The genome consists of a single circular chromosome of 6,475,296 bp containing five rRNA operons, 68 tRNA genes, and 4,959 coding genes.
December 1, 2016: Genome Announcements
Sebastian Jaenicke, Boyke Bunk, Daniel Wibberg, Cathrin Spröer, Lena Hersemann, Jochen Blom, Anika Winkler, Sarah Schatschneider, Stefan P Albaum, Roland Kölliker, Alexander Goesmann, Alfred Pühler, Jörg Overmann, Frank-Jörg Vorhölter
We report here the complete 4.7-Mb genome sequence of Xanthomonas translucens pv. translucens DSM 18974(T), which causes black chaff disease on barley (Hordeum vulgare). Genome data of this X. translucens type strain will improve our understanding of this bacterial species.
December 1, 2016: Genome Announcements
Federica Pizzurro, Iolanda Mangone, Guendalina Zaccaria, Eliana De Luca, Daniela Malatesta, Marco Innocenti, Irene Carmine, Francesca Cito, Maurilia Marcacci, Daria Di Sabatino, Alessio Lorusso
Suid herpesvirus-1 (SHV-1), a DNA virus of the family Herpesviridae, causes a severe and fatal disease in a wide range of mammals. Here, we report the whole-genome sequence of an SHV-1 isolated in Italy in 2014 from the brain of a hunting dog that suffered from an acute and severe disease.
December 1, 2016: Genome Announcements
Koji Sakai, Yasushi Ami, Yuriko Suzaki, Tetsuro Matano
We report here the first complete proviral genome sequence (DDBJ/ENA/GenBank accession no. LC094267) of a simian foamy virus, SFVmfa/Cy5061, isolated from a cynomolgus macaque (Macaca fascicularis). This proviral genome consists of 12,965 nucleotides and has five open reading frames, gag, pol, env, tas, and bet, as with other foamy viruses.
December 1, 2016: Genome Announcements
Desirée Cascales, José A Guijarro, Pilar Reimundo, Ana I García-Torrico, Jessica Méndez
We present here the draft genome of a pathogenic Yersinia ruckeri strain, isolated from rainbow trout (Oncorhynchus mykiss) affected by enteric redmouth disease. The chromosome has 3,826,775 bp, a GC content of 46.88%, and is predicted to contain 3,538 coding sequences. The data will be useful for comparative pathogenicity studies.
December 1, 2016: Genome Announcements
Allison M Weis, Kristin A Clothier, Bihua C Huang, Nguyet Kong, Bart C Weimer
Campylobacter jejuni is an intestinal bacterium that can cause abortion in livestock. This publication announces the public release of 15 Campylobacter jejuni genome sequences from isolates linked to abortion in livestock. These isolates are part of the 100K Pathogen Genome Project and are from clinical cases at the University of California (UC) Davis.
December 1, 2016: Genome Announcements
Chandan Badapanda, Rajesh Detroja, Ankita Rathore
Here, we report the draft genome sequence of Saccharomyces cerevisiae strain GUJ105, isolated clinically. The size of the genome is approximately 11.5 Mb and contains 5,447 protein-coding genes.
December 1, 2016: Genome Announcements
Mandy C Elschner, Prasad Thomas, Falk Melzer
Burkholderia mallei is a zoonotic agent causing glanders, a notifiable disease in equines. During the past decades glanders emerged, and the Kingdom of Bahrain reported outbreaks to the World Organization of Animal Health in 2010 and 2011. This paper presents the complete genome sequence of the Burkholderia mallei strain 11RR2811 Bahrain1.
December 1, 2016: Genome Announcements
Graham P Stafford, Roy R Chaudhuri, Violet Haraszthy, Valentin Friedrich, Christina Schäffer, Angela Ruscitto, Kiyonobu Honma, Ashu Sharma
We report the genome sequences of three clinical isolates of Tannerella forsythia from the subgingival plaque of periodontitis patients attending clinics at the School of Dental Medicine, University at Buffalo. The availability of these genome sequences will aid the understanding of the pathogenesis of periodontitis.
December 1, 2016: Genome Announcements
Travis K Price, Majed Shaheen, Laurynas Kalesinskas, Kema Malki, Evann E Hilt, Catherine Putonti, Alan J Wolfe
While Lactobacillus crispatus contributes to the stability of normal vaginal microbiota, its role in urinary health remains unclear. As part of an on-going attempt to characterize the female urinary microbiota, we report the genome sequence of an L. crispatus strain isolated from a woman displaying no lower urinary tract symptoms.
December 1, 2016: Genome Announcements
Szilvia Marton, Károly Erdélyi, Ádám Dán, Krisztián Bányai, Enikő Fehér
A novel variant of finch polyomavirus has been identified and sequenced from a diseased white-headed munia (Lonchura maja).
December 1, 2016: Genome Announcements
Thibaud Dugat, Marie-Noëlle Rossignol, Olivier Rué, Valentin Loux, Sylvain Marthey, Marco Moroldo, Cornelia Silaghi, Dirk Höper, Julia Fröhlich, Martin Pfeffer, Erich Zweygarth, Anne-Claire Lagrée, Henri-Jean Boulouis, Nadia Haddad
Anaplasma phagocytophilum is a zoonotic tick-borne intracellular bacterium responsible for granulocytic anaplasmosis. As it is difficult to isolate and cultivate, only 20 A. phagocytophilum genomes have been sequenced to date. Here, we present eight A. phagocytophilum genome sequences obtained using alternative approaches based on sequence capture technology.
December 1, 2016: Genome Announcements
Denis Trubitsyn, Fernanda Abreu, F Bruce Ward, Todd Taylor, Masahira Hattori, Shinji Kondo, Urmi Trivedi, Sarah Staniland, Ulysses Lins, Dennis A Bazylinski
We report here the genome sequence of Magnetovibrio blakemorei MV-1, a marine vibrioid magnetotactic bacterium with a single polar flagellum. The current assembly consists of 91 contigs with a combined size of 3,638,804 bp (54.3% G+C content). This genome allows for further investigations of the molecular biomineralization mechanisms of magnetosome formation.
November 23, 2016: Genome Announcements
Zuoyong Zhou, Hexian Li, Mengsi Zhang, Zhiying Wang, Rongqiong Zhou, Shijun Hu, Xiaoxia Li, Xinyue Song, Zheng Zhu
We report here the genome sequence of Corynebacterium pseudotuberculosis strain XH02, isolated from a Boer goat in China. The genome consists of 2,357,671 bp, with a 52.18% G+C content, 2,263 coding sequences, 21 rRNAs, 49 tRNAs, and 44 predicted pseudogenes.
November 23, 2016: Genome Announcements
Julio Villena, Lucila Saavedra, Elvira Maria Hebert, Yuki Masumizu, Nana Sato, A K M Humayun Kober, Leonardo Albarracin, Wakako Ikeda-Ohtsubo, Seiya Makino, Katsunori Kimura, Sou Ohkawara, Haruki Kitazawa
The genome sequence of Lactobacillus plantarum TL2766, a strain with the ability to ferment wakame (Undaria pinnatifida), is described here. The reads were assembled into contigs, with a total size of 3,310,195 bp. The genome information will be useful for further specific genetic studies of this strain and for its biotechnological applications.
November 23, 2016: Genome Announcements
Sushim K Gupta, Elizabeth A McMillan, Charlene R Jackson, Prerak T Desai, Steffen Porwollik, Michael McClelland, Lari M Hiott, Shaheen B Humayoun, John B Barrett, Jonathan G Frye
Here, we report a 4.78-Mb draft genome sequence of the Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain CRJJGF_00165 [also called S. enterica subsp. IIIb serovar 61:k:1,5,(7) strain CRJJGF_00165], isolated from ground beef in 2007.
November 23, 2016: Genome Announcements
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