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Genome Announcements

Negar Makhsous, Ryan C Shean, David Droppers, Jonathan Guan, Keith R Jerome, Alexander L Greninger
We report draft genome sequences of three novel bunyaviruses, two novel rhabdoviruses, and one novel nyamivirus identified metagenomically from 10 moths in Washington state.
February 16, 2017: Genome Announcements
Philippe M Oger, Nolwenn Callac, Christine Oger-Desfeux, Sandrine Hughes, Benjamin Gillet, Mohamed Jebbar, Anne Godfroy
Members of the order Thermococcales are common inhabitants of high-temperature hydrothermal vent systems (black smokers) that are represented in clone libraries mostly by isolates from the Thermococcus genus. We report the complete sequence of a novel species from the Pyrococcus genus, P. kukulkanii strain NCB100, which has been isolated from a flange fragment of the Rebecca's Roost hydrothermal vent system in the Guaymas Basin.
February 16, 2017: Genome Announcements
Aniele C Ribas Leao, Vinicius Almir Weiss, Vania Aparecida Vicente, Flavia Costa, Amanda Bombassaro, Roberto Tadeu Raittz, Maria Berenice R Steffens, Fabio Oliveira Pedrosa, Renata R Gomes, Valter Baura, Helisson Faoro, Michelle Zibetti Tadra Sfeir, Eduardo Balsanelli, Leandro F Moreno, M Javad Najafzadeh, Sybren de Hoog, Emanuel Maltempi Souza
A draft genome sequence of type strain Fonsecaea multimorphosa CBS 980.96(T) was obtained. This species was first isolated from a cat with cerebral phaeohyphomycosis in Queensland, Australia.
February 16, 2017: Genome Announcements
Marco Kaiser, Saleem Kamili, Tonya Hayden, Johannes Blümel, Sally A Baylis
We report here the sequence of a genotype 2a reference strain of hepatitis E virus (HEV), developed on behalf of the World Health Organization. The HEV reference strain is intended for use in assays based on nucleic acid amplification for the validation of HEV RNA detection.
February 16, 2017: Genome Announcements
Emille Moreno, Marci Parks, Lee J Pinnell, James J Tallman, Jeffrey W Turner
Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.
February 16, 2017: Genome Announcements
Zhihong Yao, Yu Feng, Ji Lin, Zhiyong Zong
Klebsiella pneumoniae strain WCHKP1845, recovered from the sputum of a patient with pneumonia, was resistant to colistin and carried the carbapenemase gene blaNDM-1 Here, we report its 5.4-Mb draft genome sequence, comprising 140 contigs with an average 57.33% G+C content. The genome contains 5,118 coding sequences and 88 tRNA genes.
February 16, 2017: Genome Announcements
Mohamed A Abouelkhair, Matthew C Riley, David A Bemis, Stephen A Kania
We report the first complete genome sequence of LMG 22219 (=ON 86(T) = CCUG 49543(T)), the Staphylococcus pseudintermedius type strain isolated from feline lung tissue. This sequence information will facilitate phylogenetic comparisons of staphylococcal species and other bacteria at the genome level.
February 16, 2017: Genome Announcements
Janna L Fierst, Duncan A Murdock, Chamali Thanthiriwatte, John H Willis, Patrick C Phillips
Stenotrophomonas maltophilia is a Gram-negative aerobic bacterium and emerging nosocomial pathogen. Here, we present a draft genome sequence for an S. maltophilia strain assembled from a metagenomic DNA extract isolated from a laboratory stock of the nematode worm Caenorhabditis remanei.
February 16, 2017: Genome Announcements
Jannik Donner, Boyke Bunk, Isabel Schober, Cathrin Spröer, Simone Bergmann, Michael Jarek, Jörg Overmann, Irene Wagner-Döbler
The full-genome sequences of three drug- and multidrug-resistant Streptococcus pneumoniae clinical isolates of serotype 19A were determined by PacBio single-molecule real-time sequencing, in combination with Illumina MiSeq sequencing. A comparison to the genomes of other pneumococci indicates a high nucleotide sequence identity to strains Hungary19A-6 and TCH8431/19A.
February 16, 2017: Genome Announcements
Feras F Lafi, Intikhab Alam, Rene Geurts, Ton Bisseling, Vladimir B Bajic, Heribert Hirt, Maged M Saad
Enterobacter sp. Sa187 is a plant endophytic bacterium, isolated from root nodules of the desert plant Indigofera argentea, collected from the Jizan region of Saudi Arabia. Here, we report the genome sequence of Sa187, highlighting several genes involved in plant growth-promoting activity and environmental adaption.
February 16, 2017: Genome Announcements
Fawad Ali, Haiyang Hu, Ping Xu, Hongzhi Tang
Pseudomonas sp. FA-HZ1, an efficient dibenzofuran-degrading bacterium, was isolated from landfill leachate. Here, we present the complete genome sequence of strain FA-HZ1, which contains only one circular chromosome. The complete genome sequence will be essential for revealing the molecular mechanisms of dibenzofuran degradation.
February 16, 2017: Genome Announcements
David C Bean, Sarah M Wigmore, David W Wareham
Staphylococcus cohnii subsp. urealyticus strain SW120 was isolated from the ear swab of a healthy dog. The isolate is resistant to methicillin and fusidic acid. The SW120 draft genome is 2,805,064 bp and contains 2,667 coding sequences, including 58 tRNAs and nine complete rRNA coding regions.
February 16, 2017: Genome Announcements
Noemí Buján, Alicia E Toranzo, Beatriz Magariños
Edwardsiella piscicida is a bacterial fish pathogen with a high degree of virulence. The strain ACC35.1 was isolated from diseased turbot in Europe. The draft genome sequence comprises 3.84 Mb with a G+C content of 59.8% and >3,450 protein-coding genes.
February 16, 2017: Genome Announcements
Yuli Wei, Junwei Cao, Jiasong Fang, Chiaki Kato, Weicheng Cui
Marinilactibacillus piezotolerans strain 15R is a facultatively anaerobic heterotrophic lactobacillus isolated from deep marine subsurface sediment nearly 2 km below the seafloor in the northwestern Pacific. We report here the first whole-genome sequence of strain 15R. The identified genome sequence has 2,767,908 bp, 35.4% G+C content, and predicted 2,552 candidate protein-coding sequences, with no identified plasmids.
February 16, 2017: Genome Announcements
Hikaru Suenaga, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Pseudomonas putida KF715 (NBRC 110667) utilizes biphenyl as a sole source of carbon and degrades polychlorinated biphenyls (PCBs). Here, we report a complete genome sequence of the KF715 strain, which comprises a circular chromosome and four plasmids. Biphenyl catabolic genes were located on the largest plasmid, pKF715A.
February 16, 2017: Genome Announcements
Karsten Zecher, Marcel Suleiman, Daniel Wibberg, Anika Winkler, Bodo Philipp, Jörn Kalinowski
The C1-compound monomethylamine can serve as a nitrogen, carbon, and energy source for heterotrophic bacteria. The marine alphaproteobacterium Donghicola sp. strain KarMa can use monomethylamine as a source only for nitrogen and not for carbon. Its draft genome sequence is presented here and reveals putative gene clusters for the methylamine dehydrogenase and the N-methylglutamate pathways for monomethylamine metabolism.
February 16, 2017: Genome Announcements
Joseph Adelskov, Bharat K C Patel
Cellulosilyticum sp. strain I15G10I2 was isolated from a coal seam gas water treatment pond at the Spring Gully water treatment facility, Roma, Queensland, Australia. Analysis of the genome of 4,489,861 bp and G+C content of 35.23% revealed that strain I15G10I2 shared limited similarity to members of the genus Cellulosilyticum, family Lachnospiraceae.
February 16, 2017: Genome Announcements
Atsushi Sato, Kenichiro Matsushima, Kenshiro Oshima, Masahira Hattori, Yasuji Koyama
The highly halotolerant and allopolyploid yeast Zygosaccharomyces rouxii is industrially used for the food production in high concentrations of salt, such as brewing soy sauce and miso paste. Here, we report the draft genome sequence of Z. rouxii NBRC 1876 isolated from miso paste.
February 16, 2017: Genome Announcements
Stéphane L'Haridon, Erwan Corre, Yue Guan, Manikandan Vinu, Violetta La Cono, Mickail Yakimov, Ulrich Stingl, Laurent Toffin, Mohamed Jebbar
The complete genome sequence of Methanohalophilus halophilus DSM 3094(T), a member of the Methanosarcinaceae family and the Methanosarcianales order, consists of 2,022,959 bp in one contig and contains 2,137 predicted genes. The genome is consistent with a halophilic methylotrophic anaerobic lifestyle, including the methylotrophic and CO2-H2 methanogensis pathways.
February 16, 2017: Genome Announcements
Zhangyong Dong, Tom Hsiang, Mei Luo, Meimei Xiang
Here, we present the genome sequence of an isolate (14004) of Fusarium oxysporum f. sp. melongenae, an eggplant pathogen. The final assembly consists of 1,631 scaffolds with 53,986,354 bp (G+C content, 46.4%) and 16,485 predicted genes.
February 16, 2017: Genome Announcements
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