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Genome Announcements

Yun Wang, Hu Liu, Kai Liu, Chengqiang Wang, Hailin Ma, Yuhuan Li, Qihui Hou, Fangchun Liu, Tongrui Zhang, Haide Wang, Beibei Wang, Jinjin Ma, Ruofei Ge, Baochao Xu, Gan Yao, Wenfeng Xu, Lingchao Fan, Yanqin Ding, Binghai Du
Bacillus paralicheniformis MDJK30 was isolated from the rhizosphere of a peony. It could control the pathogen of peony root rot. Here, we report the complete genome sequence of B. paralicheniformis MDJK30. Eleven secondary metabolism gene clusters were predicted.
June 22, 2017: Genome Announcements
Iva A Veseli, Chenling Tang, Jean-François Pombert
Despite their relevance to human health, not all staphylococcal species have been characterized. As such, the potential zoonotic threats posed by uninvestigated species and their contribution to the staphylococcal pangenome are unclear. Here, we report the complete genome sequence of Staphylococcus lutrae ATCC 700373, a coagulase-positive species isolated from deceased otters.
June 22, 2017: Genome Announcements
Elisangela Miceli, Luana Presta, Valentina Maggini, Marco Fondi, Emanuele Bosi, Carolina Chiellini, Camilla Fagorzi, Patrizia Bogani, Vincenzo Di Pilato, Gian Maria Rossolini, Alessio Mengoni, Fabio Firenzuoli, Elena Perrin, Renato Fani
We announce here the draft genome sequence of Arthrobacter sp. strain EpSL27, isolated from the stem and leaves of the medicinal plant Echinacea purpurea and able to inhibit human-pathogenic bacterial strains. The genome sequencing of this strain may lead to the identification of genes involved in the production of antimicrobial molecules.
June 22, 2017: Genome Announcements
Ya-Long Ma, Jin-Lan Xia, Yun Yang, Zhen-Yuan Nie, Hong-Chang Liu, Li-Zhu Liu
The complete genome of Acidianus manzaensis YN-25 consists of a chromosome of 2,687,463 bp, with a G+C content of 30.62% and 2,746 coding DNA sequences. This archaeon contains a series of specific genes involved in the oxidation of elemental sulfur and reduced inorganic sulfur compounds.
June 22, 2017: Genome Announcements
Yiren Yang, Ren Zhang
Bacillus sp. strain CDB3, isolated from cattle dip sites in Australia, is highly resistant to arsenic. It contains 22 arsenic resistance (ars) genes, of which 17 are organized in 3 ars clusters. Here, we report the draft genome sequence of CDB3, which will assist us in understanding the overall ars mechanism.
June 22, 2017: Genome Announcements
Melissa Vazquez-Hernandez, Corina Diana Ceapa, Stefany Daniela Rodríguez-Luna, Romina Rodríguez-Sanoja, Sergio Sánchez
No abstract text is available yet for this article.
June 15, 2017: Genome Announcements
Sandy Slow, Trevor Anderson, James Miller, Siddharth Singh, David Murdoch, Patrick J Biggs
Legionella longbeachae serogroup 1, predominantly found in soil and composted plant material, causes the majority of cases of Legionnaires' disease (LD) in New Zealand. Here, we report the complete genome sequence of an L. longbeachae serogroup 1 (sg1) isolate derived from a patient hospitalized with LD in Christchurch, New Zealand.
June 15, 2017: Genome Announcements
Mikhail Fokin, Damien Fleetwood, Bevan S Weir, Silas Villas-Boas
Epicoccum nigrum is a common mitosporic fungus of the Didymellaceae (Ascomycota) family known for the production of numerous secondary metabolites. Here, we present the 34.7-Mbp draft genome sequence of strain ICMP 19927 assembled from a range of short-insert and long-insert Illumina libraries.
June 15, 2017: Genome Announcements
Christopher M M Franco, Eric M Adetutu, Hoang X Le, Ross A Ballard, Ricardo Araujo, Shanan S Tobe, Bobby Paul, Sandeep Mallya, Kapaetu Satyamoorthy
The complete genome sequences of two endophytic Streptomyces sp. strains, LUP30 and LUP47B, were analyzed. These strains were isolated from surface-sterilized roots of lucerne plants from South Australia and were found to promote the growth of the rhizobial partner in vitro and significantly increased nodulation and nitrogen fixation in lucerne plants.
June 15, 2017: Genome Announcements
Diane Sunira Daniel, Han Ming Gan, Sui Mae Lee, Gary A Dykes, Sadequr Rahman
Enterococcus faecalis is known to cause a variety of nosocomial infections, including urinary tract infections. Antibiotic resistance and virulence properties in this species are of public concern. The draft genome sequences of six E. faecalis strains isolated from clinical and environmental sources in Malaysia are presented here.
June 15, 2017: Genome Announcements
Francis Muchaamba, Claudia Guldimann, Taurai Tasara, María Inés Mota, Valeria Braga, Gustavo Varela, Gabriela Algorta, Jochen Klumpp, Marco Jermini, Roger Stephan
The foodborne pathogen Listeria monocytogenes causes severe disease mainly in the vulnerable populations of the young, old, pregnant, and immunocompromised. Here, we present the genome sequence of L. monocytogenes H34, a serotype 1/2b, lineage I, sequence type 489 (ST489) strain, isolated from a neonatal sepsis case in Uruguay.
June 15, 2017: Genome Announcements
William G Miller, Emma Yee, Joana Revez, James L Bono, Mirko Rossi
Campylobacter cuniculorum is a thermotolerant species isolated from farmed rabbits (Oryctolagus cuniculus). Although C. cuniculorum is highly prevalent in rabbits farmed for human consumption, the pathogenicity of this organism in humans is still unknown. This study describes the whole-genome sequence of the C. cuniculorum type strain LMG 24588 (=CCUG 56289(T)).
June 15, 2017: Genome Announcements
Marion Pohlner, Ian Marshall, Lars Schreiber, Heribert Cypionka, Bert Engelen
Pseudoruegeria sp. SK021 is a member of the Roseobacter group, isolated under aerobic conditions from North Sea sediment. The draft genome comprises 3.95 Mb and contains 3,747 protein-coding sequences. Although the strain is nonmotile under laboratory conditions, the entire set of genes for the formation of a flagellar apparatus was found.
June 15, 2017: Genome Announcements
Anja Poehlein, Anna Lena Gippert, Maaike J Bierenbroodspot, Rolf Daniel
Clostridium oryzae was originally isolated from the soil of a Japanese rice field. C. oryzae represents a novel species within the genus Clostridium and is associated with anaerobic rice straw degradation. Here, we present the draft genome sequence of C. oryzae DSM 28571 (5.076 Mbp), containing 4,590 predicted protein-coding genes.
June 15, 2017: Genome Announcements
Vera Thiel, Daniela I Drautz-Moses, Rikky W Purbojati, Stephan C Schuster, Stephen Lindemann, Donald A Bryant
The genome of the green sulfur bacterium Prosthecochloris sp. strain HL-130-GSB, isolated from a cyanobacterial mat obtained from Hot Lake, a saline meromictic lake in Washington, USA, comprises 2,437,774 bp in a single contig. The genome is predicted to encode 2,565 proteins and contain 47 tRNA genes and 2 rRNA operons.
June 15, 2017: Genome Announcements
Tomo Aoyagi, Hideaki Koike, Tomotake Morita, Yuya Sato, Hiroshi Habe, Tomoyuki Hori
Here, we report a draft genome sequence of Geobacter pelophilus strain Dfr2, a ferric iron-reducing bacterium. This genome information will further our understanding of the mechanisms underlying electron transfer from microorganisms to ferric iron oxides.
June 15, 2017: Genome Announcements
Robert R Butler, Jahna T A Soomer-James, Michel Frenette, Jean-François Pombert
Streptococcus salivarius strains are significant contributors to the human oral microbiome. Some possess unique fimbriae that give them the ability to coaggregate and colonize particular oral structures. We present here the complete genomes of Streptococcus salivarius Lancefield K(-)/K(+) strains ATCC 25975 and ATCC 27945, which can and cannot, respectively, produce fimbriae.
June 15, 2017: Genome Announcements
Erik Swanson, Rediet Oshone, Imen Nouioui, Feseha Abebe-Akele, Stephen Simpson, Krystalynne Morris, W Kelley Thomas, Arnab Sen, Faten Ghodhbane-Gtari, Maher Gtari, Louis S Tisa
Frankia sp. strain Cc1.17 is a member of the Frankia lineage 3, the organisms of which are able to reinfect plants of the Eleagnaceae, Rhamnaceae, and Myricaceae families and the genera Gynmnostoma and Alnus Here, we report the 8.4-Mbp draft genome sequence, with a G+C content of 72.14% and 6,721 candidate protein-coding genes.
June 15, 2017: Genome Announcements
Marcus Tank, Zhenfeng Liu, Niels-Ulrik Frigaard, Lynn P Tomsho, Stephan C Schuster, Donald A Bryant
Chlorobaculum limnaeum DSM 1677(T) is a mesophilic, brown-colored, chlorophototrophic green sulfur bacterium that produces bacteriochlorophyll e and the carotenoid isorenieratene as major pigments. This bacterium serves as a model organism in molecular research on photosynthesis, sulfur metabolism, and bacteriochlorophyll biosynthesis. We report here the complete genome sequence.
June 15, 2017: Genome Announcements
Pushpa Lata, Subramaniam S Govindarajan, Feng Qi, Jian-Liang Li, Santosh K Maurya, Malaya K Sahoo
Two strains of Morganella morganii, AA1 and AV1, were isolated from freshwater and Eicchornia crassipes roots, respectively. Here, we report their draft genome sequences, which are ~3.6 Mb and have 51% G+C content. The predicted coding sequences (3,259 for strain AA1 and 3,345 for strain AV1) encode beta-lactamases, transpeptidases, and penicillin-binding proteins.
June 15, 2017: Genome Announcements
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