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Genome Announcements

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https://www.readbyqxmd.com/read/28082509/draft-genome-sequence-of-flavobacterium-succinicans-strain-dd5b
#1
Anja Poehlein, Hristo Najdenski, Diliana D Simeonova
We present the first 3.315-Mbp assembled draft genome sequence of Flavobacterium succinicans strain DD5b. This bacterium is a phosphite-assimilating representative of the genus Flavobacterium isolated from guts of the zooplankton Daphnia magna.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082508/genome-sequence-of-enterococcus-faecalis-strain-cg_e
#2
Christina Gabris, Anja Poehlein, Frank R Bengelsdorf, Rolf Daniel, Peter Dürre
Enterococcus faecalis CG_E is a Gram-positive, lactic acid-producing coccus. The draft genome of E. faecalis strain CG_E comprises 2,969,881 bp and exhibits a G+C content of 37.34%. The genome encodes 2,848 predicted protein-encoding and 97 RNA genes.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082507/genome-sequence-of-lactobacillus-sunkii-strain-cg_d
#3
Christina Gabris, Anja Poehlein, Frank R Bengelsdorf, Rolf Daniel, Peter Dürre
Lactobacillus sunkii CG_D is a rod-shaped, Gram-positive, and heterofermentative lactic acid bacterium. The draft genome of L. sunkii strain CG_D comprises 2,794,637 bp with an average G+C content of 42.03%. The genome harbors 2,662 predicted protein-encoding, and 71 RNA genes.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082506/draft-genome-sequence-of-jvap01t-the-type-strain-of-the-novel-species-acinetobacter-dijkshoorniae
#4
Dietmar Fernández-Orth, Clara Cosgaya, Murat Telli, Noraida Mosqueda, Marta Marí-Almirall, Ignasi Roca, Jordi Vila
Here, we report the draft genome sequence of the type strain of Acinetobacter dijkshoorniae, a novel human pathogen within the Acinetobacter calcoaceticus-Acinetobacter baumannii (ACB) complex. Strain JVAP01(T) has an estimated genome size of 3.9 Mb, exhibits a 38.8% G+C content, and carries a plasmid with the blaNDM-1 carbapenemase gene.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082505/annotation-of-fusarium-graminearum-ph-1-version-5-0
#5
Robert King, Martin Urban, Kim E Hammond-Kosack
Fusarium graminearum floral infections are a major risk to the global supply of safe cereal grains. We report updates to the PH-1 reference genome and significant improvements to the annotation. Changes include introduction of legacy annotation identifiers, new gene models, secretome and effectorP predictions, and inclusion of extensive untranslated region (UTR) annotations.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082504/draft-genome-sequence-of-pseudomonas-aeruginosa-strain-hex1t-isolated-from-soils-contaminated-with-used-lubricating-oil-in-argentina
#6
Adela M Luján, Sofía Feliziani, Andrea M Smania
Pseudomonas aeruginosa Hex1T was isolated from soils contaminated with used lubricating oil from a garage in Córdoba, Argentina. This strain is capable of utilizing this pollutant as the sole carbon and energy source. Here, we present the 6.9-Mb draft genome sequence of Hex1T, which contains many heavy metal-resistance genes.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082503/metaviromes-of-extracellular-soil-viruses-along-a-namib-desert-aridity-gradient
#7
Olivier Zablocki, Evelien M Adriaenssens, Aline Frossard, Mary Seely, Jean-Baptiste Ramond, Don Cowan
The Namib Desert in southwest Africa is hyperarid and composed of distinct microbial communities affected by a longitudinal aridity gradient. Here, we report four soil metaviromes from the Namib Desert, assessed using deep sequencing of metavirome libraries prepared from DNA extracted from gravel plain surface soils.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082502/draft-genome-sequence-of-an-anicemycin-producer-streptomyces-sp-tp-a0648
#8
Hisayuki Komaki, Akira Hosoyama, Akane Kimura, Natsuko Ichikawa, Yasuhiro Igarashi
We report the draft genome sequence of Streptomyces sp. TP-A0648 isolated from a leaf of Aucuba japonica This strain produces a new tumor cell growth inhibitor designated anicemycin. The genome harbors at least 12 biosynthetic gene clusters for polyketides and nonribosomal peptides, suggesting the potential to produce diverse secondary metabolites.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082501/genome-sequence-of-porphyromonas-gingivalis-strain-381
#9
Ryan P Chastain-Gross, Gary Xie, Myriam Bélanger, Dibyendu Kumar, Joan A Whitlock, Li Liu, Sarah M Raines, William G Farmerie, Hajnalka E Daligault, Cliff S Han, Thomas S Brettin, Ann Progulske-Fox
Porphyromonas gingivalis is associated with both oral and systemic diseases. Strain-specific P. gingivalis invasion phenotypes do not reliably predict disease presentation during in vivo studies. Here, we present the genome sequence of 381, a common laboratory strain, with a single contig of 2,378,872 bp and a G+C content of 48.36%.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082500/complete-genome-sequence-of-spiroplasma-sp-tu-14
#10
Wen-Sui Lo, Mindia Haryono, Gail E Gasparich, Chih-Horng Kuo
Spiroplasma sp. TU-14 was isolated from a contaminated sample of Entomoplasma lucivorax PIPN-2(T) obtained from the International Organization for Mycoplasmology collection. Here, we report the complete genome sequence of this bacterium to facilitate the investigation of its biology and the comparative genomics among Spiroplasma spp.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082499/draft-genome-sequences-of-15-staphylococcus-aureus-isolates-recovered-from-raw-milk-and-associated-milk-filters-from-victoria-australia
#11
Kate McMillan, Theodore R Allnutt, Edward M Fox
This study describes draft whole genomes of 15 Staphylococcus aureus isolates from dairy farms located in Victoria, Australia. Two novel sequence types (ST3183 and ST3184) were identified among these isolates.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082498/whole-genome-sequence-of-escherichia-coli-serotype-o157-h7-strain-pa20
#12
Gaylen A Uhlich, George C Paoli, Xinmin Zhang, Edward G Dudley, Hillary M Figler, Bryan J Cottrell, Elisa Andreozzi
Escherichia coli serotype O157:H7 strain PA20 is a Pennsylvania Department of Health clinical isolate. It has been used to study biofilm formation in O157:H7 clinical isolates, where the high incidence of prophage insertions in the mlrA transcription factor disrupts traditional csgD biofilm regulation. Here, we report the complete PA20 genome sequence.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082497/complete-genome-sequence-of-streptococcus-iniae-uel-si1-isolated-in-diseased-nile-tilapia-oreochromis-niloticus-from-northern-paran%C3%A3-southern-brazil
#13
Laurival A Vilas-Boas, Selwyn A Headley, Kátia B Gonçalves, Josiane A Scarpassa, Lucienne G Pretto-Giordano
The Streptococcus iniae UEL-Si1 strain was isolated from diseased Nile tilapia within the Paranapanema River Basin, Northern Paraná, Brazil. This is an emerging infectious disease agent of fish from Brazil, and sequencing of the complete genome is fundamental to understanding aspects relative to pathogenesis, infection, epidemiology, and immunity.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082496/complete-genome-sequence-of-a-novel-wu-polyomavirus-isolate-from-arkansas-usa-associated-with-acute-respiratory-infection
#14
J L Kennedy, J L Denson, K S Schwalm, A N Stoner, J C Kincaid, T J Abramo, T M Thompson, E M Ulloa, S W Burchiel, D L Dinwiddie
We report here the complete genome sequence of a WU polyomavirus (WUPyV) isolate, also known as human polyomavirus 4, collected in 2016 from a patient in Arkansas with an acute respiratory infection. Isolate hPyV4/USA/AR001/2016 has a double-stranded DNA genome of 5,229 bp in length.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082495/genome-sequence-of-christensenella-minuta-dsm-22607t
#15
Bruce A Rosa, Kymberlie Hallsworth-Pepin, John Martin, Aye Wollam, Makedonka Mitreva
Obesity influences and is influenced by the human gut microbiome. Here, we present the genome of Christensenella minuta, a highly heritable bacterial species which has been found to be strongly associated with obesity through an unknown biological mechanism. This novel genome provides a valuable resource for future obesity therapeutic studies.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082494/metagenome-sequencing-of-prokaryotic-microbiota-collected-from-rivers-in-the-upper-amazon-basin
#16
Célio Dias Santos-Júnior, Luciano Takeshi Kishi, Danyelle Toyama, Andrea Soares-Costa, Tereza Cristina Souza Oliveira, Fernando Pellon de Miranda, Flávio Henrique-Silva
Tropical freshwater environments, like rivers, are important reservoirs of microbial life. This study employed metagenomic sequencing to survey prokaryotic microbiota in the Solimões, Purus, and Urucu Rivers of the Amazon Basin in Brazil. We report a rich and diverse microbial community.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082493/sequence-of-reston-virus-isolate-az-1435-an-ebolavirus-isolate-obtained-during-the-1989-1990-reston-virus-epizootic-in-the-united-states
#17
Joseph P Cornish, Larissa Diaz, Stacy M Ricklefs, Kishore Kanakabandi, Jennifer Sword, Peter B Jahrling, Jens H Kuhn, Stephen F Porcella, Reed F Johnson
Reston virus (RESTV) was discovered in 1989-1990 during three connected epizootics of highly lethal viral hemorrhagic fever among captive macaques in primate housing facilities in the United States and Philippines. Currently, only one RESTV isolate from that outbreak (named Pennsylvania) has been sequenced. Here, we report the sequence of a second isolate, Reston virus/M.fascicularis-tc/USA/1990/Philippines89-AZ1435.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082492/metagenomic-analysis-of-cucumber-rna-from-east-timor-reveals-an-aphid-lethal-paralysis-virus-genome
#18
Solomon Maina, Owain R Edwards, Luis de Almeida, Abel Ximenes, Roger A C Jones
We present here the first complete genomic Aphid lethal paralysis virus (ALPV) sequence isolated from cucumber plant RNA from East Timor. We compare it with two complete ALPV genome sequences from China, and one each from Israel, South Africa, and the United States. It most closely resembled the Chinese isolate LGH genome.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082491/genome-sequence-of-uric-acid-fermenting-eubacterium-angustum-dsm-1989t-mk-1
#19
Anja Poehlein, Michael Y Galperin, Jan R Andreesen, Rolf Daniel
Eubacterium angustum DSM 1989(T) (MK-1) is a strictly anaerobic and uric acid-, xanthine-, and guanine-fermenting organism isolated from sewage sludge. The draft genome consists of one circular chromosome (2.4 Mb) and harbors 2,397 predicted protein-encoding genes.
January 12, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28082490/draft-genome-sequence-of-the-plant-growth-promoting-pseudomonas-punonensis-strain-d1-6-isolated-from-the-desert-plant-erodium-hirtum-in-jordan
#20
Feras F Lafi, Maha L AlBladi, Nida M Salem, Luma Al-Banna, Intikhab Alam, Vladimir B Bajic, Heribert Hirt, Maged M Saad
Pseudomonas punonensis strain D1-6 was isolated from roots of the desert plant Erodium hirtum, near the Dead Sea in Jordan. The genome of strain D1-6 reveals several key plant growth-promoting and herbicide-resistance genes, indicating a possible specialized role for this endophyte.
January 12, 2017: Genome Announcements
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