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https://www.readbyqxmd.com/read/28818914/complete-genome-sequence-of-citrobacter-freundii-705sk3-an-oxa-48-encoding-wastewater-isolate
#1
Katrin Zurfluh, Roger Stephan, Jochen Klumpp, Magdalena Nüesch-Inderbinen, Jörg Hummerjohann, Claudia Bagutti, Roger Marti
We present the genome sequence of Citrobacter freundii 705SK3, a wastewater isolate harboring an IncL OXA-48-encoding plasmid. Assembly of the genome resulted in a 5,242,839-bp circular chromosome (GC content, 52%) and two closed plasmids of 296,175 bp and 63, 458 bp in size.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818913/draft-genome-sequence-of-klebsiella-pneumoniae-704sk6-an-oxa-48-and-ctx-m-15-encoding-wastewater-isolate
#2
Roger Marti, Roger Stephan, Jochen Klumpp, Magdalena Nüesch-Inderbinen, Jörg Hummerjohann, Claudia Bagutti, Katrin Zurfluh
The Swiss wastewater isolate Klebsiella pneumoniae 704SK6, encoding OXA-48 and CTX-M-15 β-lactamases, was fully sequenced. The assembly resulted in an open chromosome of 5,208,104 bp in size (G+C content, 57.6%) and four closed plasmid sequences of 209,651, 197,670, 65,998, and 63,605 bp in size.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818912/complete-genome-sequence-of-enterobacter-cloacae-704sk10-an-oxa-48-encoding-wastewater-isolate
#3
Roger Marti, Roger Stephan, Jochen Klumpp, Magdalena Nüesch-Inderbinen, Jörg Hummerjohann, Claudia Bagutti, Katrin Zurfluh
Here we present the complete genome sequence of Enterobacter cloacae 704SK10, a Swiss wastewater isolate encoding an OXA-48 carbapenemase. Assembly resulted in closed sequences of the 4,876,946-bp chromosome, a 111,184-bp IncF plasmid, and an OXA-48-encoding IncL plasmid (63,458 bp) nearly identical to the previously described plasmid pOXA-48.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818911/complete-genome-sequence-of-a-naturally-occurring-simian-foamy-virus-isolate-from-rhesus-macaque-sfvmmu_k3t
#4
Subhiksha Nandakumar, Eunhae H Bae, Arifa S Khan
The full-length genome sequence of a simian foamy virus (SFVmmu_K3T), isolated from a rhesus macaque (Macaca mulatta), was obtained using high-throughput sequencing. SFVmmu_K3T consisted of 12,983 bp and had a genomic organization similar to that of other SFVs, with long terminal repeats (LTRs) and open reading frames for Gag, Pol, Env, Tas, and Bet.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818910/draft-genome-sequence-of-a-clinical-isolate-of-streptococcus-mutans-strain-hm
#5
Yoshio Kondo, Haruka Nishimata, Kiyoshi Hidaka, Tomoyuki Hasuwa, Hiroyuki Moriuchi, Taku Fujiwara, Tomonori Hoshino
We report the draft genome sequence of Streptococcus mutans strain HM isolated from a 4-year-old girl with infective endocarditis. The genomics information will provide information on the genetic diversity and virulence potential of S. mutans strain HM.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818909/draft-genome-sequence-of-grammothele-lineata-sdl-co-2015-1-a-jute-endophyte-with-a-potential-for-paclitaxel-biosynthesis
#6
Avizit Das, Oly Ahmed, A K M Abdul Baten, Samira Bushra, M Tariqul Islam, Ahlan Sabah Ferdous, Mohammad Riazul Islam, Haseena Khan
Grammothele lineata strain SDL-CO-2015-1, a basidiomycete fungus, was identified as an endophyte from a jute species, Corchorus olitorius var. 2015, and found to produce paclitaxel, a diterpenic polyoxygenated pseudoalkaloid with antitumor activity. Here, we report the draft genome sequence (42.8 Mb with 9,395 genes) of this strain.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818908/deep-sequencing-reveals-a-divergent-ugandan-cassava-brown-streak-virus-isolate-from-malawi
#7
Willard Mbewe, Stephan Winter, Settumba Mukasa, Fred Tairo, Peter Sseruwagi, Joseph Ndunguru, Siobain Duffy
Illumina sequencing of RNA from a cassava cutting from northern Malawi produced a genome of Ugandan cassava brown streak virus (UCBSV-MW-NB7_2013). Sequence comparisons revealed stronger similarity to an isolate from nearby Tanzania (93.4% pairwise nucleotide identity) than to those previously reported from Malawi (86.9 to 87.0%).
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818907/draft-genome-sequence-of-the-d-xylose-fermenting-yeast-spathaspora-xylofermentans-ufmg-hmd23-3
#8
Daiane D Lopes, Samuel P Cibulski, Fabiana Q Mayer, Franciele M Siqueira, Carlos A Rosa, Ronald E Hector, Marco Antônio Z Ayub
Here, we report the draft genome sequence of the yeast Spathaspora xylofermentans UFMG-HMD23.3 (=CBS 12681), a d-xylose-fermenting yeast isolated from the Amazonian forest. The genome consists of 298 contigs, with a total size of 15.1 Mb, including the mitochondrial genome, and 5,948 predicted genes.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818906/draft-genome-sequence-of-aquitalea-magnusonii-strain-h3-a-plant-growth-promoting-bacterium-of-duckweed-lemna-minor
#9
Hidehiro Ishizawa, Masashi Kuroda, Michihiko Ike
Aquitalea magnusonii strain H3 is a promising plant growth-promoting bacterium for duckweed. Here, we report the draft genome sequence of strain H3 comprising 4,750,601 bp in 73 contigs. Several genes associated with plant root colonization were identified.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818905/complete-genome-sequence-of-mycobacterium-stephanolepidis
#10
Hanako Fukano, Mitsunori Yoshida, Yukie Katayama, Tsutomu Omatsu, Tetsuya Mizutani, Osamu Kurata, Shinpei Wada, Yoshihiko Hoshino
Mycobacterium stephanolepidis is a rapid-growing nonpigmented species isolated from marine teleost fish (Stephanolepis cirrhifer) and is closely related to Mycobacterium chelonae Here, we report the complete sequence of its genome, comprising a 4.9-Mb chromosome. The sequence represents essential data for future phylogenetic and comparative genome studies of this fish pathogen.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818904/first-genome-sequence-of-shallot-latent-carlavirus-from-allium-macrostemon-bunge
#11
Kazusato Ohshima, Kouta Okamura, Ryosuke Yasaka, Shinji Fukuda, Kanji Ishimaru, Yasuhiro Tomitaka, Kazuo Yamashita
A wild Japanese garlic plant (Allium macrostemon Bunge, wild onion) with leaves showing chlorotic stripes was collected in Saitama Prefecture, Japan. Genome sequencing showed that it was infected with shallot latent carlavirus. The genomic sequence of this virus is reported for the first time from wild onion.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818903/draft-genome-sequence-of-staphylococcus-aureus-s681-a-tetracycline-sensitive-livestock-associated-methicillin-resistant-clonal-complex-398-strain
#12
Marc J A Stevens, Roger Stephan, Sophia Johler
We present the draft genome sequence of an atypical tetracycline-susceptible livestock-associated methicillin-resistant Staphylococcus aureus (MRSA) strain. It contains 2,817,340 bp and 2,858 coding sequences, including 6 rRNA operons, 56 tRNAs, and 4 noncoding RNA (ncRNA) genes. The strain harbors a tet(M) gene, but 15 point mutations in amino acids are present that likely impair the functionality of TetM.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818902/draft-genome-sequence-of-ideonella-sp-strain-a-288-isolated-from-an-iron-precipitating-biofilm
#13
Burga Braun, Sven Künzel, Ulrich Szewzyk
Here, we report the draft genome sequence of the betaproteobacterium Ideonella sp. strain A_228. This isolate, obtained from a bog iron ore-containing floodplain area in Germany, provides valuable information about the genetic diversity of neutrophilic iron-depositing bacteria. The Illumina NextSeq technique was used to sequence the draft genome sequence of the strain.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818901/draft-genome-sequence-of-lactobacillus-fermentum-bfe-6620-a-potential-starter-culture-for-african-vegetable-foods-isolated-from-fermented-cassava
#14
Eliud N Wafula, Erik Brinks, Biserka Becker, Melanie Huch, Bernhard Trierweiler, Julius M Mathara, Folarin A Oguntoyinbo, Gyu-Sung Cho, Charles M A P Franz
We report the draft genome sequence of Lactobacillus fermentum BFE 6620 from fermented cassava used as a potential starter culture for African vegetable fermentation. Sequence analysis showed the assembled genome size to be 1,982,893 bp, encoding a predicted total of 2,003 protein-coding genes, 14 rRNAs, 54 tRNAs, and 3 noncoding RNAs (ncRNAs).
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818900/genome-sequence-of-an-australian-monophasic-salmonella-enterica-subsp-enterica-typhimurium-isolate-tw-stm6-carrying-a-large-plasmid-with-multiple-antimicrobial-resistance-genes
#15
Mike L Dyall-Smith, Yuhong Liu, Helen Billman-Jacobe
We report the genome sequence of a monophasic Salmonella enterica subsp. enterica Typhimurium strain (TW-Stm6) isolated in Australia that is similar to epidemic multidrug-resistant strains from Europe and elsewhere. This strain carries additional antibiotic and heavy-metal resistance genes on a large (275-kb) IncHI2 plasmid.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818899/draft-genome-sequence-of-sphingobacterium-sp-cz-uam-isolated-from-a-methanotrophic-consortium
#16
José Luis Steffani-Vallejo, Cristal Zuñiga, Pablo Cruz-Morales, Luis Lozano, Marcia Morales, Cuauhtemoc Licona-Cassani, Sergio Revah, José Utrilla
Sphingobacterium sp. CZ-UAM was isolated from a methanotrophic consortium in mineral medium using methane as the only carbon source. A draft genome of 5.84 Mb with a 40.77% G+C content is reported here. This genome sequence will allow the investigation of potential methanotrophy in this isolated strain.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818898/draft-genome-sequences-of-two-unclassified-chitinophagaceae-bacteria-ibvucb1-and-ibvucb2-isolated-from-environmental-samples
#17
Russell J S Orr, Stephane Rombauts, Yves Van de Peer, Kamran Shalchian-Tabrizi
We report here the draft genome sequences of two Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, assembled from metagenomes of surface samples from freshwater lakes. The genomes are >99% complete and may represent new genera within the Chitinophagaceae family, indicating a larger diversity than currently identified.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818897/draft-genome-sequence-of-bacillus-sp-strain-k2i17-isolated-from-the-rhizosphere-of-deschampsia-antarctica-desv
#18
Alequis Pavón, Paz Orellana, Lorena Salazar, Sandra Céspedes, Laura Muiño, Ana Gutiérrez, Daniel Castillo, Gino Corsini
We present here the draft genome sequence of Bacillus sp. strain K2I17, which was isolated from the rhizosphere of Deschampsia antarctica Desv. The genomic sequence contained 6,113,341 bp. This genome provides insights into the possible new biomedical and biotechnical applications of this specific Antarctic bacterium.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818896/genome-sequences-of-three-novel-isolates-of-human-parainfluenza-virus-2-associated-with-acute-respiratory-infection
#19
J L Kennedy, J C Kincaid, K C Schwalm, A N Stoner, T J Abramo, T M Thompson, O Hardin, C Putt, D L Dinwiddie
Using target capture of viral nucleic acid and next-generation sequencing, we generated the genome sequences of three novel human parainfluenza virus 2 isolates. Isolates ACRI_0185 (GenBank accession number MF077311), ACRI_0230 (MF077312), and ACRI_0248 (MF077313) were collected in October 2016, February 2017, and March 2017, respectively, from pediatric patients with acute respiratory infection in Arkansas.
August 17, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28818895/genome-sequence-of-the-thermophilic-biomass-degrading-fungus-malbranchea-cinnamomea-fch-10-5
#20
Zoraide Granchi, Sake van Pelt, Vu Nguyen Thanh, Lisbeth Olsson, Silvia Hüttner
We report here the annotated draft genome sequence of the thermophilic biomass-degrading fungus Malbranchea cinnamomea strain FCH 10.5, isolated from compost at a waste treatment plant in Vietnam. The genome sequence contains 24.96 Mb with an overall GC content of 49.79% and comprises 9,437 protein-coding genes.
August 17, 2017: Genome Announcements
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