journal
https://read.qxmd.com/read/38505677/benchmarking-different-docking-protocols-for-predicting-the-binding-poses-of-ligands-complexed-with-cyclooxygenase-enzymes-and-screening-chemical-libraries
#1
JOURNAL ARTICLE
Sara Shamsian, Babak Sokouti, Siavoush Dastmalchi
INTRODUCTION: Non-steroidal anti-inflammatory drugs (NSAIDs) constitute an important class of pharmaceuticals acting on cyclooxygenase COX-1 and COX-2 enzymes. Due to their numerous severe side effects, it is necessary to search for new selective, safe, and effective anti-inflammatory drugs. In silico design of novel therapeutics plays an important role in nowadays drug discovery pipelines. In most cases, the design strategies require the use of molecular docking calculations. The docking procedure may require case-specific condition for a successful result...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505676/protective-effects-of-limb-remote-ischemic-per-conditioning-on-the-heart-injury-induced-by-renal-ischemic-reperfusion-through-the-interaction-of-the-apelin-with-the-ras-inos-pathway
#2
JOURNAL ARTICLE
Sahar Janfeshan, Fatemeh Masjedi, Zeinab Karimi
INTRODUCTION: Remote ischemic conditioning upregulates endogenous protective pathways in response to ischemia-reperfusion injury. This study tested the hypothesis that limb remote ischemic per- conditioning (RIPerC) exerts cardioprotective effects via the renin-angiotensin system (RAS)/inducible nitric oxide synthase (iNOS)/apelin pathway. METHODS: Renal ischemia-reperfusion injury (I/R) was induced by bilateral occlusion of the renal pedicles for 60 minutes, followed by 24 hours of reperfusion; sham-operated rats served as controls...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505675/introduction-of-a-new-recombinant-vaccine-based-on-grp78-for-breast-cancer-immunotherapy-and-evaluation-in-a-mouse-model
#3
JOURNAL ARTICLE
Hamed Zare, Hamid Bakherad, Arman Nasr Esfahani, Mohamad Norouzi, Hossein Aghamollaei, Seyed Latif Mousavi Gargari, Fatemeh Mahmoodi, Mahdi Aliomrani, Walead Ebrahimizadeh
INTRODUCTION: Breast cancer is one of the most prevalent malignancies in women. Several treatment options are available today, including surgery, chemotherapy, and radiotherapy. Immunotherapy, as a highly specific therapy, involves adaptive immune responses and immunological memory. In our present research, we used the recombinant C-terminal domain of the GRP78 (glucose- regulated protein 78) protein to induce an immune response and investigate its therapeutic impact in the 4T1 breast cancer model...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505674/molecular-properties-prediction-anticancer-and-anti-inflammatory-activities-of-some-pyrimido-1-2-b-pyridazin-2-one-derivatives
#4
JOURNAL ARTICLE
Ali Zeiz, Ranin Kawtharani, Mirvat Elmasri, Ghada Khawaja, Eva Hamade, Aida Habib, Abeer J Ayoub, Mohamed Abarbri, Mohammad H El-Dakdouki
INTRODUCTION: The anticancer and anti-inflammatory activities of a novel series of eleven pyrimido[1,2-b]pyridazin-2-one analogues substituted at position 7 were assessed in the current study. METHODS: The physicochemical characteristics were studied using MolSoft software. The antiproliferative activity was investigated by MTT cell viability assay, and cell cycle analysis elucidated the antiproliferative mechanism of action. Western blot analysis examined the expression levels of key pro-apoptotic (Bax, p53) and pro-survival (Bcl-2) proteins...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505673/a-novel-imidazo-1-2-a-pyridine-derivative-and-its-co-administration-with-curcumin-exert-anti-inflammatory-effects-by-modulating-the-stat3-nf-%C3%AE%C2%BAb-inos-cox-2-signaling-pathway-in-breast-and-ovarian-cancer-cell-lines
#5
JOURNAL ARTICLE
Havva Afshari, Shokoofe Noori, Mitra Nourbakhsh, Azam Daraei, Mahsa Azami Movahed, Afshin Zarghi
INTRODUCTION: Imidazo[1,2- a ]pyridine derivatives with diverse pharmacological properties and curcumin, as a potential natural anti-inflammatory compound, are promising compounds for cancer treatment. This study aimed to synthesize a novel imidazo[1,2- a ]pyridine derivative, (MIA), and evaluate its anti-inflammatory activity and effects on nuclear factor-κB (NF-κB) and signal transducer and activator of transcription 3 (STAT3) pathways, and their target genes, alone and in combination with curcumin, in MDA-MB-231 and SKOV3 cell lines...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505672/simultaneous-suppression-of-mir-21-and-restoration-of-mir-145-in-gastric-cancer-cells-a-promising-strategy-for-inhibition-of-cell-proliferation-and-migration
#6
JOURNAL ARTICLE
Farzaneh Bilan, Mohammad Amini, Mohammad Amin Doustvandi, Maryam Tohidast, Amir Baghbanzadeh, Seyed Samad Hosseini, Ahad Mokhtarzadeh, Behzad Baradaran
INTRODUCTION: Gastric cancer (GC) is the third leading cause of cancer-related death worldwide. microRNAs are a group of regulatory non-coding RNAs that are involved in GC progression. miR-145 as a tumor suppressor and miR-21 as an oncomiR were shown to be dysregulated in many cancers including GC. This research aimed to enhance the expression of miR-145 while reducing the expression of miR-21 and examine their impact on the proliferation, apoptosis, and migration of GC cells. METHODS: KATO III cells with high expression levels of miR-21-5p and low expression of miR-145-5p were selected...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505671/comparative-molecular-docking-and-toxicity-between-carbon-capped-metal-oxide-nanoparticles-and-standard-drugs-in-cancer-and-bacterial-infections
#7
JOURNAL ARTICLE
Navid Mohammadjani, Sahand Karimi, Musa Moetasam Zorab, Morahem Ashengroph, Mehran Alavi
INTRODUCTION: Nanoparticles (NPs) are of great interest in the design of various drugs due to their high surface-to-volume ratio, which result from their unique physicochemical properties. Because of the importance of examining the interactions between newly designed particles with different targets in the case of various diseases, techniques for examining the interactions between these particles with different targets, many of which are proteins, are now very common. METHODS: In this study, the interactions between metal oxide nanoparticles (MONPs) covered with a carbon layer (Ag2 O3 , CdO, CuO, Fe2 O3 , FeO, MgO, MnO, and ZnO NPs) and standard drugs related to the targets of Cancer and bacterial infections were investigated using the molecular docking technique with AutoDock 4...
2024: BioImpacts: BI
https://read.qxmd.com/read/38505670/essential-role-of-cd38-in-platelet-aggregation-through-the-pkc-mediated-internalization-and-activation
#8
JOURNAL ARTICLE
Mazhar Mushtaq, Maira Mahmood, Uzma Jabbar, Uh-Hyun Kim
INTRODUCTION: CD38 is a multifunctional enzyme with a potent Ca2+ mobilizing effect, cyclic ADP-ribose (cADPR), and nicotinic acid adenine dinucleotide phosphate (NAADP). Here, we aimed to demonstrate the role of CD38 in platelets via protein kinase C (PKC)-mediated internalization and activation. METHODS: Mouse platelets were used in this study. Thrombin, an agonist of platelet function, provoked a prompt and long-lasting increase in intracellular Ca2+ concentration ([Ca2+ ]i), resulting from an interplay of multifold Ca2+ mobilizing messengers...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327636/inhibitory-effect-of-mir342-on-the-progression-of-triple-negative-breast-cancer-cells-in-vitro-and-in-the-mice-model
#9
JOURNAL ARTICLE
Zahra Alidoost, Farnoosh Attari, Fatemeh Saadatpour, Ehsan Arefian
INTRODUCTION: Breast cancer is the most common cancer in women worldwide, and the triple-negative subtype is the most invasive, with limited therapeutic options. Since miRNAs are involved in many cellular processes, they harbor great value for cancer treatment. Therefore, in this study, we have investigated the anti-proliferative and anti-invasive roles of miR342 in 4T1 triple-negative cells in vitro and also studied the effect of this miRNA on tumor progression and the expression of its target genes in vivo ...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327635/synthesis-and-initial-in-vitro-evaluation-of-olmutinib-derivatives-as-prospective-imaging-probe-for-non-small-cell-lung-cancer
#10
JOURNAL ARTICLE
Muammar Fawwaz, Kenji Mishiro, Arwansyah Arwansyah, Ryuichi Nishii, Kazuma Ogawa
INTRODUCTION: Imaging a non-small cell lung cancer (NSCLC) using radiolabeled tyrosine kinase inhibitors (TKIs) has attracted attention due to their unique interaction with the target epidermal growth factor receptor (EGFR). Olmutinib (OTB) is one of the third-generation EGFR TKIs, which selectively inhibit EGFR L858R/T790M mutation. In this study, we aim to estimate the interaction of the iodinated OTB (I-OTB)-receptor complex by molecular docking. Furthermore, we will synthesize the I-OTB and evaluate its activity toward EGFR L858R/T790M by in vitro cytotoxicity assay...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327634/static-electromagnetic-field-and-recombinant-human-fibroblasts-encoding-mir-451-and-mir-16-increased-cell-trans-differentiation-to-cd-71-and-cd-235a-erythroid-like-progenitor
#11
JOURNAL ARTICLE
Nafiseh Karoubi, Gholamreza Khamisipour, Nahid Babaei, Narges Obeidi, Abbas Doosti
INTRODUCTION: Ex vivo blood production is an urgent need of most countries, and creating production protocols can save the lives of many patients. Despite the recent advances in blood production in ex vivo conditions, its high-scale production is not yet possible, and requires further studies. Therefore, by transfecting fibroblast cells with miR-16, and miR-451 genes, as well as applying low frequency electromagnetic fields (ELF-EMF) treatment, we tried to increase the differentiation of these cells into CD71+ and CD235a+ erythroid like progenitors...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327633/exploratory-data-analysis-of-physicochemical-parameters-of-natural-antimicrobial-and-anticancer-peptides-unraveling-the-patterns-and-trends-for-the-rational-design-of-novel-peptides
#12
JOURNAL ARTICLE
Sandeep Saini, Aayushi Rathore, Sheetal Sharma, Avneet Saini
INTRODUCTION: Peptide-based research has attained new avenues in the antibiotics and cancer drug resistance era. The basis of peptide design research lies in playing with or altering physicochemical parameters. Here in this work, we have done exploratory data analysis (EDA) of physicochemical parameters of antimicrobial peptides (AMPs) and anticancer peptides (ACPs), two promising therapeutics for microbial and cancer drug resistance to deduce patterns and trends. METHODS: Briefly, we have captured the natural AMPs and ACPs data from the APD3 database...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327632/effect-of-honokiol-on-culture-time-and-survival-of-alzheimer-s-disease-ipsc-derived-neurons
#13
JOURNAL ARTICLE
Duong Thi Thuy Le, Cuong Manh Vu, Thuy Thi Bich Ly, Nam Trung Nguyen, Phuong Thi Mai Nguyen, Ha Hoang Chu
INTRODUCTION: Patient-derived induced pluripotent stem cells (iPSCs) have been widely used as disease models to test new therapeutic strategies. Moreover, the regenerative potential of stem cells can be improved with the use of biologically active compounds. Our study was designed to explore the effect of honokiol, a small polyphenol molecule extracted from Magnolia officinalis , on the survival and culture time of iPSC-derived neurons from a sporadic Alzheimer's disease (AD) patient...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327631/targeting-long-non-coding-rnas-as-new-modulators-in-anti-egfr-resistance-mechanisms
#14
EDITORIAL
Mostafa Akbarzadeh-Khiavi, Azam Safary, Yadollah Omidi
Epidermal growth factor receptor (EGFR) is a cell surface protein that plays a vital role in regulating cell growth and division. However, certain tumors, such as colorectal cancer (CRC), can exhibit an overexpression of EGFR, resulting in uncontrolled cell growth and tumor progression. To address this issue, therapies targeting and inhibiting EGFR activity have been developed to suppress cancer growth. Nevertheless, resistance to these therapies poses a significant obstacle in cancer treatment. Recent research has focused on comprehending the underlying mechanisms contributing to anti-EGFR resistance and identifying new targets to overcome this striking challenge...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327630/bioscaffolds-of-graphene-based-polymeric-hybrid-materials-for-myocardial-tissue-engineering
#15
REVIEW
Nazanin Amiryaghoubi, Marziyeh Fathi
INTRODUCTION: Biomaterials currently utilized for the regeneration of myocardial tissue seem to associate with certain restrictions, including deficiency of electrical conductivity and sufficient mechanical strength. These two factors play an important role in cardiac tissue engineering and regeneration. The contractile property of cardiomyocytes depends on directed signal transmission over the electroconductive systems that happen inside the innate myocardium. Because of their distinctive electrical behavior, electroactive materials such as graphene might be used for the regeneration of cardiac tissue...
2024: BioImpacts: BI
https://read.qxmd.com/read/38327629/design-and-computational-analysis-of-an-effective-multi-epitope-vaccine-candidate-using-subunit-b-of-cholera-toxin-as-a-build-in-adjuvant-against-urinary-tract-infections
#16
JOURNAL ARTICLE
Maryam Rezaei, Mehri Habibi, Parasoo Ehsani, Mohammad Reza Asadi Karam, Saeid Bouzari
INTRODUCTION: Urinary tract infection (UTI) is one of the most common infections, usually caused by uropathogenic Escherichia coli (UPEC). However, antibiotics are a usual treatment for UTIs; because of increasing antibiotic-resistant strains, vaccination can be beneficial in controlling UTIs. Using immunoinformatics techniques is an effective and rapid way for vaccine development. METHODS: Three conserved protective antigens (FdeC, Hma, and UpaB) were selected to develop a novel multi-epitope vaccine consisting of subunit B of cholera toxin (CTB) as a mucosal build-in adjuvant to enhance the immune responses...
2024: BioImpacts: BI
https://read.qxmd.com/read/38022384/comparison-the-therapeutic-effects-of-bone-marrow-cd144-endothelial-cells-and-cd146-mesenchymal-stem-cells-in-pof-rats
#17
JOURNAL ARTICLE
Nahideh Nazdikbin Yamchi, Farhad Amjadi, Rahim Beheshti, Mehdi Hassanpour, Reza Shirazi, Amin Tamadon, Reza Rahbarghazi, Mahdi Mahdipour
INTRODUCTION: Premature ovarian insufficiency (POI) is a challenging issue in terms of reproduction biology. In this study, therapeutic properties of bone marrow CD146+ mesenchymal stem cells (MSCs) and CD144+ endothelial cells (ECs) were separately investigated in rats with POI. METHODS: POI rats were classified into control POI, POI + CD146+ MSCs, and POI + CD144+ ECs groups. Enriched CD146+ MSCs and CD144+ ECs were directly injected into ovarian tissue (15 × 104 cells/10 μL) in relevant groups...
2023: BioImpacts: BI
https://read.qxmd.com/read/38022383/epithelial-cells-progenitor-cells-in-developing-human-lower-respiratory-tract-characterization-and-transplantation-to-rat-model-of-pulmonary-injury
#18
JOURNAL ARTICLE
Fatemeh Ganji, Marzieh Ebrahimi, Ali Shirani, Mahtab Golmohammadi, Mazaher Gholipourmalekabadi, Maryam Kashanian, Kiana Koolaeinezhad, Hamid Reza Davari, Seyed Ali Javad Mousavi, Hamid Reza Aghayan, Babak Arjmand, Ramin Heshmat, Nushin Karkuki Osguei, Ali Samadikuchaksaraei
INTRODUCTION: For cell-based therapies of lung injury, several cell sources have been extensively studied. However, the potential of human fetal respiratory cells has not been systematically explored for this purpose. Here, we hypothesize that these cells could be one of the top sources and hence, we extensively updated the definition of their phenotype. METHODS: Human fetal lower respiratory tissues from pseudoglandular and canalicular stages and their isolated epithelial cells were evaluated by immunostaining, electron microscopy, flow cytometry, organoid assay, and gene expression studies...
2023: BioImpacts: BI
https://read.qxmd.com/read/38022382/the-application-safety-and-future-of-ex-vivo-immune-cell-therapies-and-prognosis-in-different-malignancies
#19
REVIEW
Katelyn R Einloth, Scott Gayfield, Thomas McMaster, Alexander Didier, Lance Dworkin, Justin Fortune Creeden
INTRODUCTION: Immunotherapy has revolutionized how cancer is treated. Many of these immunotherapies rely on ex vivo expansion of immune cells, classically T cells. Still, several immunological obstacles remain, including tumor impermeability by immune cells and the immunosuppressive nature of the tumor microenvironment (TME). Logistically, high costs of treatment and variable clinical responses have also plagued traditional T cell-based immunotherapies. METHODS: To review the existing literature on cellular immunotherapy, the PubMed database was searched for publications using variations of the phrases "cancer immunotherapy", " ex vivo expansion", and "adoptive cell therapy"...
2023: BioImpacts: BI
https://read.qxmd.com/read/38022381/towards-modeling-of-phonation-and-its-recovery-in-unilateral-vocal-fold-paralysis-by-fluid-structure-interaction
#20
JOURNAL ARTICLE
MohammadAmin Naseri, Seyed Esmail Razavi
INTRODUCTION: Vocal folds are responsible for sound generation. In unilateral vocal fold paralysis (UVFP), the recurrent laryngeal nerve, which controls the vocal folds, is paralyzed. Medialization laryngoplasty is a surgery in which an implant is inserted to push the paralyzed vocal fold to the centerline to recover phonation. METHODS: Here, a numerical simulation is used to calculate flow-related parameters to give insight into what happens in healthy and treated(implanted) vocal folds and their enhancement...
2023: BioImpacts: BI
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