journal
MENU ▼
Read by QxMD icon Read
search

Environmental Microbiology Reports

journal
https://www.readbyqxmd.com/read/28517238/flen-and-fleq-play-a-synergistic-role-in-regulating-lapa-and-bcs-operons-in-pseudomonas-putida-kt2440
#1
Hailing Nie, Yujie Xiao, Huizhong Liu, Jinzhi He, Wenli Chen, Qiaoyun Huang
FleN generally functions as an antagonist of FleQ in regulating flagellar genes and biofilm matrix related genes in Pseudomonas aeruginosa. Here we found that in Pseudomonas putida KT2440, FleN and FleQ play a synergistic role in regulating two biofilm matrix coding operons, lapA and bcs. FleN deletion decreased transcription of lapA and increased transcription of bcs operon, the same trend was observed in fleQ deletion mutant before. In vitro experiments showed that FleN promoted binding of FleQ to the lapA/bcs promoter DNA especially in the presence of ATP...
May 18, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28493460/single-cell-genomics-reveals-pyrrolysine-encoding-potential-in-members-of-uncultivated-archaeal-candidate-division-msbl1
#2
Yue Guan, Mohamed F Haroon, Intikhab Alam, James G Ferry, Ulrich Stingl
Pyrrolysine (Pyl), the 22(nd) canonical amino acid, is only decoded and synthesized by a limited number of organisms in the domains Archaea and Bacteria. Pyl is encoded by the amber codon UAG, typically a stop codon. To date, all known Pyl-decoding archaea are able to carry out methylotrophic methanogenesis. The functionality of methylamine methyltransferases, an important component of corrinoid-dependent methyltransfer reactions, depends on the presence of Pyl. Here, we present a putative pyl gene cluster obtained from single-cell genomes of the archaeal Mediterranean Sea Brine Lakes group 1 (MSBL1) from the Red Sea...
May 10, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28489316/streptomyces-an-annotated-selection-of-world-wide-web-sites-relevant-to-the-topics-in-environmental-microbiology
#3
Lawrence P Wackett
No abstract text is available yet for this article.
May 10, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28488795/the-novel-bacterial-phylum-calditrichaeota-is-diverse-widespread-and-abundant-in-marine-sediments-and-has-the-capacity-to-degrade-detrital-proteins
#4
Ian P G Marshall, Piotr Starnawski, Carina Cupit, Eva Fernández Cáceres, Thijs J G Ettema, Andreas Schramm, Kasper U Kjeldsen
Calditrichaeota is a recently recognised bacterial phylum with three cultured representatives, isolated from hydrothermal vents. Here we expand the phylogeny and ecology of this novel phylum with metagenome-derived and single-cell genomes from six uncultivated bacteria previously not recognised as members of Calditrichaeota. Using 16S rRNA gene sequences from these genomes, we then identified 322 16S rRNA gene sequences from cultivation-independent studies that can now be classified as Calditrichaeota for the first time...
May 10, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28474433/regulation-of-nitrous-oxide-reductase-genes-by-nast-mediated-transcription-antitermination-in-bradyrhizobium-diazoefficiens
#5
Cristina Sánchez, Hisayuki Mitsui, Kiwamu Minamisawa
In Bradyrhizobium diazoefficiens, maximal expression of the nitrous oxide reductase gene (nosZ) requires oxygen limitation and the presence of a nitrogen oxide. The putative transcription antiterminator NasT is a positive regulator of nosZ; but in the absence of nitrate, NasT is counteracted by the nitrate sensor NasS. Here we examined the NasT-mediated mechanism of nosRZDFYLX gene cluster expression. We mapped two transcription start sites of nosR and identified two potential hairpins, H1 and H2, within the 5'-leader of nosR transcripts...
May 4, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28464539/vancomycin-resistant-enterococci-with-vana-and-vanb-genes-in-australian-gulls
#6
Veronika Oravcova, Pavel Svec, Ivan Literak
This study is revealing the possible dissemination of vancomycin-resistant enterococci (VRE) from humans into the wildlife. We studied silver gulls (Chroicocephalus novaehollandiae) in Australia as potential carriers and reservoirs of VRE with acquired vancomycin resistance. In New South Wales (Australia), we have found two multi-resistant isolates belonging to Enterococcus faecium (sequence type 341, vanB genotype) and Enterococcus dispar (vanA genotype). Based on our knowledge, this is the first report of VRE in Australian wildlife...
May 2, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28464532/correspondence-of-coral-holobiont-metabolome-with-symbiotic-bacteria-archaea-and-symbiodinium-communities
#7
Emilia M Sogin, Hollie M Putnam, Craig E Nelson, Paul Anderson, Ruth D Gates
Microbial symbiotic partners, such as those associated with Scleractinian corals, mediate biochemical transformations that influence host performance and survival. While evidence suggests microbial community composition partly accounts for differences in coral physiology, how these symbionts affect metabolic pathways remains underexplored. We aimed to assess functional implications of variation among coral-associated microbial partners in hospite. To this end, we characterized and compared metabolomic profiles and microbial community composition from nine reef-building coral species...
May 2, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28429584/dna-metabarcoding-of-unfractionated-water-samples-relates-phyto-zoo-and-bacterioplankton-dynamics-and-reveals-a-single-taxon-bacterial-bloom
#8
Christian Wurzbacher, Katrin Attermeyer, Marie Therese Kettner, Clara Flintrop, Norman Warthmann, Sabine Hilt, Hans-Peter Grossart, Michael T Monaghan
Most studies of aquatic plankton focus on either macroscopic or microbial communities, and on either eukaryotes or prokaryotes. This separation is primarily for methodological reasons, but can overlook potential interactions among groups. We tested whether DNA metabarcoding of unfractionated water samples with universal primers could be used to qualitatively and quantitatively study the temporal dynamics of the total plankton community in a shallow temperate lake. We found significant changes in the relative proportions of normalized sequence reads of eukaryotic and prokaryotic plankton communities over a three-month period in spring...
April 21, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28418094/the-skin-microbiome-of-the-common-thresher-shark-alopias-vulpinus-has-low-taxonomic-and-potential-metabolic-%C3%AE-diversity
#9
Michael P Doane, John Matthew Haggerty, Dovi Kacev, Bhavya Papudeshi, Elizabeth A Dinsdale
The health of sharks is linked with emergent properties of its microbiome. Most marine organisms have mucus overlying the skin, but shark have dermal denticles that protrude above the mucus. We characterized the microbiome from the skin of the common thresher shark (Alopias vulpinus) to investigate the structure and composition of the skin microbiome. An average of 618,812 reads per metagenomic library contained open reading frames (80.9% ± S.D. 0.44%), and 7.6 to 12.8% matched known protein sequences...
April 18, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28419783/high-occurrence-of-bathyarchaeota-mcg-in-the-deep-sea-sediments-of-south-china-sea-quantified-using-newly-designed-pcr-primers
#10
Tiantian Yu, Qianyong Liang, Mingyang Niu, Fengping Wang
The archaeal phylum Bathyarchaeota, which is composed of a large number of diverse lineages, is widespread and abundant in marine sediments. Environmental factors that control the distribution, abundance, and evolution of this largely diversified archaeal phylum are currently unclear. In this study, a new pair of specific primers that target the major marine subgroups of bathyarchaeotal 16S rRNA genes was designed and evaluated to investigate the distribution and abundance of Bathyarchaeota in marine sediments...
April 17, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28419734/the-life-sulfuric-microbial-ecology-of-sulfur-cycling-in-marine-sediments
#11
REVIEW
Kenneth Wasmund, Marc Mußmann, Alexander Loy
Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick and represent a vast microbial ecosystem that is a major component of Earth's element and energy cycles. Notably, a significant proportion of microbial life in marine sediments can exploit energy conserved during transformations of sulfur compounds among different redox states. Sulfur cycling, which is primarily driven by sulfate reduction, is tightly interwoven with other important element cycles (carbon, nitrogen, iron, manganese) and therefore has profound implications for both cellular- and ecosystem-level processes...
April 17, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28401694/effects-of-grazing-phosphorus-and-light-on-the-growth-rates-of-major-bacterioplankton-taxa-in-the-coastal-nw-mediterranean
#12
Olga Sánchez, Michal Koblížek, Josep M Gasol, Isabel Ferrera
Estimation of growth rates is crucial to understand the ecological role of prokaryotes and their contribution to marine biogeochemical cycling. However, there are only a few estimates for individual taxa. Two top-down (grazing) and bottom-up (phosphorus (P) availability) manipulation experiments were conducted under different light regimes in the NW Mediterranean Sea. Growth rate of different phylogenetic groups, including the Bacteroidetes, Rhodobacteraceae, SAR11, Gammaproteobacteria and its subgroups Alteromonadaceae and the NOR5/OM60 clade, were estimated from changes in cell numbers...
April 12, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28401690/oxygen-and-the-activity-and-distribution-of-marine-thaumarchaeota
#13
James T Hollibaugh
No abstract text is available yet for this article.
April 12, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28345298/effects-of-t-loop-modification-on-the-pii-signalling-protein-structure-of-uridylylated-escherichia-coli-glnb-bound-to-atp
#14
Carles Palanca, Vicente Rubio
To adapt to environments with variable nitrogen sources and richness, the widely distributed homotrimeric PII signalling proteins bind their allosteric effectors ADP/ATP/2-oxoglutarate, and experience nitrogen-sensitive uridylylation of their flexible T-loops at Tyr51, regulating their interactions with effector proteins. To clarify whether uridylylation triggers a given T-loop conformation, we determined the crystal structure of the classical paradigm of PII protein, Escherichia coli GlnB (EcGlnB), in fully uridylylated form (EcGlnB-UMP3 )...
March 26, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28296273/cyclic-di-gmp-signalling-meets-extracellular-polysaccharide-synthesis-in-bacillus-subtilis
#15
Jan Kampf, Jörg Stülke
In order to resist harmful environmental conditions, many bacteria form multicellular aggregates called biofilms. In these biofilms, they protect themselves in a self-produced matrix consisting of extracellular polysaccharides, proteins and DNA. In many bacteria, biofilm formation is stimulated in the presence of the second messenger cyclic di-GMP. In this issue of Environmental Microbiology Reports, Bedrunka and Graumann have studied matrix production by the proteins encoded in the Bacillus subtilis ydaJKLMN operon...
March 13, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28296199/antibiotics-in-the-environment-an-annotated-selection-of-world-wide-web-sites-relevant-to-the-topics-in-environmental-microbiology
#16
Lawrence P Wackett
No abstract text is available yet for this article.
March 13, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28294562/hierarchical-mutational-events-compensate-for-glutamate-auxotrophy-of-a-bacillus-subtilis-gltc-mutant
#17
Miriam Dormeyer, Anastasia L Lübke, Peter Müller, Sabine Lentes, Daniel R Reuß, Andrea Thürmer, Jörg Stülke, Rolf Daniel, Sabine Brantl, Fabian M Commichau
Glutamate is the major donor of nitrogen for anabolic reactions. The Gram-positive soil bacterium Bacillus subtilis either utilizes exogenously provided glutamate or synthesizes it using the gltAB-encoded glutamate synthase (GOGAT). In the absence of glutamate, the transcription factor GltC activates expression of the GOGAT genes for glutamate production. Consequently, a gltC mutant strain is auxotrophic for glutamate. Using a genetic selection and screening system, we could isolate and differentiate between gltC suppressor mutants in one step...
March 13, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28276199/new-insights-into-a-hot-environment-for-early-life
#18
REVIEW
Jianghong Dai
Investigating the physical-chemical setting of early life is a challenging task. In this contribution, the author attempted to introduce a provocative concept from cosmology - cosmic microwave background (CMB), which is the residual thermal radiation from a hot early Universe - to the field. For this purpose, the author revisited a recently deduced biomarker, the 1,6-anhydro bond of sugars in bacteria. In vitro, the 1,6-anhydro bond of sugars reflects and captures residual thermal radiation in thermochemical processes and therefore is somewhat analogous to CMB...
March 9, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28276162/novel-insights-into-ecological-distribution-and-plant-growth-promotion-by-nitrogen-fixing-endophytes-how-specialised-are-they
#19
Ray Dixon, Anton Hartmann
No abstract text is available yet for this article.
March 9, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28251810/the-water-channel-protein-aquaporin-1-regulates-cellular-metabolism-and-competitive-fitness-in-a-global-fungal-pathogen-cryptococcus-neoformans
#20
Gena Lee Meyers, Kwang-Woo Jung, Soohyun Bang, Jungyeon Kim, Sooah Kim, Joohyeon Hong, Eunji Cheong, Kyoung Heon Kim, Yong-Sun Bahn
In this study, an aquaporin protein, Aqp1, in Cryptococcus neoformans, which can lead either saprobic or parasitic lifestyles and causes life-threatening fungal meningitis was identified and characterized. AQP1 expression was rapidly induced (via the HOG pathway) by osmotic or oxidative stress. In spite of such transcriptional regulation, Aqp1 was found to be largely unnecessary for adaptation to diverse environmental stressors, regardless of the presence of the polysaccharide capsule. The latter is shown here to be a key environmental-stress protectant for C...
March 2, 2017: Environmental Microbiology Reports
journal
journal
42283
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"