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Mitochondrial DNA

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https://www.readbyqxmd.com/read/26710310/the-complete-mitochondrial-genome-of-the-fulvous-parrotbill-paradoxornis-fulvifrons-passeriformes-muscicapidae
#1
Longying Wen, Xiaojun Yang, Jinhua Liao, Yiqiang Fu, Bo Dai
The complete mitochondrial genome of the fulvous parrotbill (Paradoxornis fulvifrons) has been determined from Illumina sequencing data. The circular genome is 17 059 bp long, comprising 37 genes (13 protein-coding genes/PCGs, 22 tRNA genes and two rRNA genes) and a putative control region. Except for COX1 with GTG as its start codon, all PCGs are initiated with the ATR (ATA/ATG) codons. One PCG (COX1) is terminated with AGG, three PCGs (COX3, ND2 and ND4) with the incomplete stop codon T--/TA-, while all the others with TAA...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710301/sequence-variation-in-three-mitochondrial-genes-among-gasterophilus-intestinalis-isolates-from-two-distinct-regions-in-china
#2
De-Zhen Gao, Guo-Hua Liu, Guang-Lei Wang, Xing-Quan Zhu, Chun-Ren Wang
Horse gastrointestinal myiasis caused by larvae of Gasterophilus spp. has a worldwide distribution. However, little information is available on the genetic variation of Gasterophilus spp. at the molecular level. In the present study, sequence variation was examined in three mitochondrial (mt) genes, namely mt cytochrome c oxidase subunit 1 (cox1), NADH dehydrogenase subunits 5 (nad5) and large subunit ribosomal RNA (rrnL), among G. intestinalis isolates originating from Heilongjiang Provience and Xinjiang Uygur Autonomous Region, China...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710270/the-complete-mitochondrial-genome-of-tambocerus-sp-hemiptera-cicadellidae
#3
Pengfei Yu, Mengxin Wang, Lin Cui, Xuexin Chen, Baoyu Han
The complete mitochondrial genome of Tambocerus sp. (Hemiptera: Cicadellidae) from Zhejiang and Anhui provinces of China was sequenced. The total length of the mitogenome is 15 955 bp (GenBank accession no. KT827824) and consists of 22 transfer RNAs, 13 protein-coding genes, 2 ribosomal RNAs and 1 control region. The base composition of the heavy strand for A, T, C, and G is 41.39, 35.02, 14.00, and 9.59%, respectively. All of the protein-coding genes (PCGs) start with ATN. Five protein-coding genes use TAA as stop codons, four use TAG as stop codons, and others use incomplete stop codons ''T--'' or ''TA-''...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710262/the-chloroplast-genome-of-the-marine-green-macroalga-ulva-fasciata-delile-ulvophyceae-chlorophyta
#4
James T Melton, Juan M Lopez-Bautista
We present the 96 005 bp circular chloroplast genome (cpDNA) of Ulva fasciata. This cpDNA was ∼4000 bp smaller than the cpDNA of Ulva sp. UNA00071828; however, this cpDNA was AT rich (75.1%) similar to Ulva sp. The U. fasciata cpDNA was also similar in gene content (101 identified genes) compared to Ulva sp., which included 71 protein-coding genes, 3 ribosomal RNAs (rRNAs) and 27 transfer RNAs (tRNAs). Only one tRNA, trnN(AUU), that was present in Ulva sp. was absent in U. fasciata. Five introns were present in the following genes of U...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710250/the-first-complete-chloroplast-genome-sequence-from-violaceae-viola-seoulensis
#5
Kyeong-Sik Cheon, Jong-Cheol Yang, Kyung-Ah Kim, Su-Kil Jang, Ki-Oug Yoo
The complete chloroplast genome of Viola seoulensis, an endemic species to Korea, was determined in this study. The total genome size was 156 507 bp in length, containing a pair of inverted repeats (IRs) of 26 404 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 85 691 and 18 008 bp, respectively. The overall GC contents of the plastid genome were 36.3%. One hundred and thirty genes were annotated, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710185/complete-mitochondrial-genome-sequence-of-indian-medium-carp-labeo-gonius-hamilton-1822-and-its-comparison-with-other-related-carp-species
#6
Bijay Kumar Behera, Kavita Kumari, Vishwamitra Singh Baisvar, Ajaya Kumar Rout, Sudip Pakrashi, Prasenjet Paria, J K Jena
In the present study, the complete mitochondrial genome sequence of Labeo gonius is reported using PGM sequencer (Ion Torrent). The complete mitogenome of L. gonius is obtained by the de novo sequences assembly of genomic reads using the Torrent Mapping Alignment Program (TMAP) which is 16 614 bp in length. The mitogenome of L. gonius comprised of 13 protein-coding genes, 22 tRNAs, 2 rRNA genes, and D-loop as control region along with gene order and organization, being similar to most of other fish mitogenomes of NCBI databases...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710172/complete-mitochondrial-dna-genome-of-hippocampus-mohnikei-gasterosteiformes-syngnathidae
#7
Zhaohui Zhang, Zhi Chen, Linlin Zhao, Na Song, Tianxiang Gao
In this study, we sequenced the complete mitochondrial genome of Hippocampus mohnikei (Gasterosteiformes, Syngnathidae). This mitochondrial genome, consisting of 16 518 base pairs (bp), contains 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a non-coding control region as those found in other vertebrates. The control region, of 878 bp in length, is located between tRNA(Pro) and tRNA(Phe). The overall base composition of the heavy strand shows 29.90% of T, 22.98% of C, 32.12% of A, and 15...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710166/the-complete-chloroplast-genome-sequence-of-panax-vietnamensis-ha-et-grushv-araliaceae
#8
Binh Nguyen, Kyunghee Kim, Young-Chang Kim, Sang-Choon Lee, Ji Eon Shin, Junki Lee, Nam-Hoon Kim, Woojong Jang, Hong-Il Choi, Tae-Jin Yang
The complete chloroplast genome sequence of Panax vietnamensis, a medicinal herb belonging to Araliaceae family, was generated by de novo assembly using whole genome next-generation sequences. The chloroplast genome was a circular form of 155 992 bp long and showed typical chloroplast genome structure consisting of a large single-copy region of 86 177 bp, a small single copy region of 17 935 bp and a pair of inverted repeats of 25 940 bp. The chloroplast genome had 79 protein-coding genes, 29 tRNA genes and 4 rRNA genes...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26710121/the-complete-mitochondrial-genome-sequence-of-glyptothorax-laosensis-siluriformes-sisoridae
#9
Fujiang Huang, Mingdian Liu, Lixiong Yu, Shaoping Liu
The complete mitogenome sequence of Glyptothorax laosensis was determined using long PCR reactions. The genome is 16 539 bp in length, including 13 typical vertebrate protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. Except for eight tRNA and ND6 genes, all other mitochondrial genes are encoded on the heavy strand. The gene order and composition of G. laosensis was similar to that of most other vertebrates. The descending order of the base composition on heavy strand was 31...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709981/the-complete-mitochondrial-genome-of-pseudaesopia-japonica-pleuronectiformes-soleidae
#10
Lizhen Si, Li Gong, Wei Shi, Min Yang, Xiaoyu Kong
The Pseudaesopia japonica belongs to family Soleidae in order Pleuronectiformes. In this study, the complete mitochondrial genome of P. japonica was determined and described. The mitogenome is 16 790 bp in length and consists of 13 protein-coding genes, 22 tRNAs, two rRNAs, one control region, and a light strand replication origin. The arrangement of this mitogenome is identical to that of the typical teleost. The overall base composition is 28.5%, 25.7%, 30.3%, and 15.5%, for A, T, C, and G, respectively, with a slight bias on A + T content (54...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709972/the-complete-mitochondrial-genome-of-carassius-auratus-var-high-back-crucian-carp-cypriniformes-cyprinidae
#11
Guangjun Wang, Zhifei Li, Bin Long, Lingyun Yu, Ermeng Yu, Jun Xie, Jiangfeng Chen
In this study, the complete mitochondrial genome sequence of Carassius auratus var. high back crucian carp (C. auratus var.) was determined (GenBank accession number is KT756205). The mitochondrial genome sequence of C. auratus var. was a circular molecule with 16 581 bp in length, and contained 37 typical animal mitochondrial genes, including 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and a control region (D-loop). Four nucleotide compositions and their relative proportions of the entire mitogenome was 26...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709967/the-complete-mitochondrial-genome-of-the-nematophagous-fungus-lecanicillium-saksenae
#12
Bei Xin, Runmao Lin, Baoming Shen, Zhenchuan Mao, Xinyue Cheng, Bingyan Xie
Lecanicillium saksenae CGMCC5329 is a useful biological control agent against plant-parasitic nematodes. The complete mitogenome sequence of L. saksenae is reported for the first time. The mitochondrial genome is 25 919 bp long with 14 typical protein-coding genes, an intronic ORF coding for a putative ribosomal protein (rps3), 2 ribosomal RNA genes and a set of 26 transfer RNA genes. The phylogeny based on 12 protein-coding genes (except the loss of other two genes in Acremonium implicatum) suggests the close phylogenetic relationship between L...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709875/complete-mitochondrial-genome-of-spiniphilus-spinicornis-coleoptera-vesperidae-philinae-and-phylogenetic-analysis-among-cerambycoidea
#13
RuiE Nie, MeiYing Lin, HuaiJun Xue, Ming Bai, XingKe Yang
Spiniphilus spinicornis belongs to subfamily Philinae of family Vesperidae from cerambycoid assemblage. The first complete mitogenome of Spiniphilus spinicornis was reported. The genome is 15 707 bp in length and contains the typical 37 genes that are arranged in the same order as that of the putative ancestor of beetles. The total base composition of the mitogenome is 30.9% for A, 11.1% for C, 19.3% for G, and 38.6% for T. The genome organization, nucleotide composition, and codon usage do not differ significantly from other martens...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709873/the-complete-mitochondrial-genome-sequence-of-kichulchoia-multifasciata-teleostei-cypriniformes-cobitidae
#14
Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, Jae-Ho Shin
The Kichulchoia multifasciata (Teleostei, Cypriniformes, Cobitidae) is one of the loaches and is endemic to Korea. The complete mitochondrial genome sequence consisted of 16 569 base pairs (bp) encoding 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and 2 non-coding region. The overall base composition of K. multifasciata was G + C: 42.5% and A + T: 57.5%, apparently with a slight AT bias. Phylogenetic analysis showed that K. multifasciata was closely related to Koreocobitis rotundicaudata...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709872/the-complete-mitochondrial-genomes-of-opisthoplatia-orientalis-and-blaptica-dubia-blattodea-blaberidae
#15
Xiaoxuan Tian, Guangyin Ma, Ying Cui, Pengzhi Dong, Yan Zhu, Xiumei Gao
The first complete mitochondrial genome in Blaberidae has been reported in this research. Opisthoplatia orientalis (Blaberidae, Epilamprinae) known as ground cockroach with golden edge is distributed in East and South Asia and widely used for thrombolytic therapy in China. Meanwhile, Blaptica dubia (Blaberidae, Blaberinae) has been adopted as feeder insect for various kinds of pets all over the world. In the present study, we investigated the complete mitochondrial genome of O. orientalis and B. dubia, and the mitogenome is 18 724  and 17 340 bp in length, respectively...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709866/complete-mitochondrial-genome-of-the-gray-red-backed-vole-myodes-rufocanus-and-a-complete-estimate-of-the-phylogenetic-relationships-in-cricetidae
#16
Taofeng Lu, Minghao Zhu, Cheng Yi, Changde Si, Chunwen Yang, Hongyan Chen
Myodes rufocanus belongs to the genera Myodes within the subfamily Cricetidae, its complete mitochondrial genome is 16 487 bp in length, containing 12S rRNA gene, 16S rRNA gene, 22 tRNA genes, 13 protein-coding genes and 1 control region as other Cricetidae species. Results of phylogenetic analysis showed that Myodes had close relationship with Eothenomys, and had distant relationship with Microtus, Cricetulus, Wiedomys, Akodon and other genera. This study verifies the evolutionary status of Myodes rufocanus in Myodes at the molecular level...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709743/mitochondrial-genome-and-phylogenetic-position-of-the-tawny-nurse-shark-nebrius-ferrugineus
#17
Junjie Wang, Hao Chen, Lingling Lin, Weiming Ai, Xiao Chen
The complete mitochondrial genome of the tawny nurse shark (Nebrius ferrugineus) was first presented in this study. It was 16 693 bp in length with the typical gene order in vertebrates. The overall base composition was 33.6% A, 25.6% C, 12.7% G and 28.1% T. Two start (ATG and GTG) and two stop (TAG and TAA/T--) codons were found in the protein-coding genes. The size of 22 tRNA genes ranged from 67 to 75 bp. The origin of L-strand replication could form a hairpin structure. All nodes strongly supported that N...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709742/next-generation-sequencing-yields-the-complete-mitochondrial-genome-of-the-mummichog-fundulus-heteroclitus
#18
Ting Zhu, Shaoshu Feng, Xin Liu, Qingwei Li
Fundulus heteroclitus (Actinopteri, Cyprinodontiformes, Fundulidae), with a remarkable tolerance to osmotic stress and water temperatures, are regarded as a significant evolution model. Herein, we report the assembled complete sequence of the mummichog mitochondrial genome based on the next-generation sequencing data. The mitogenome is determined to be 16 528 bp in length and shows an organization typical of vertebrate mitochondrial genomes, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region (D-loop)...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709737/the-complete-mitochondrial-genome-of-the-oedaleus-infernalis-sauss-orthoptera-oedipodidae
#19
Chunan Guo, Qin Zhang, Yuan Huang
The Oedaleus infernalis sauss (Orthoptera: Oedipodidae) is one of the main pests at the rice production area in China, and they mainly feed on leaves and grain of rice. The mitogenome was 15 898 bp long and composed of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one putative control region. Most protein-coding genes started with a traditional ATN codon, and terminated with the mitochondria stop codon (TAA/TAG) or a single T-- base. The average A + T content of the O. infernalis sauss mitochondrial genome protein-coding sequence, rRNA, tRNA gene, and A + T-rich region was corresponding well to the A + T bias generally observed in insect mitochondrial genomes...
December 28, 2015: Mitochondrial DNA
https://www.readbyqxmd.com/read/26709669/the-complete-mitochondrial-genome-sequence-and-gene-organization-of-the-rainbow-runner-elagatis-bipinnulata-perciformes-carangidae
#20
Chunyan Ma, Hongyu Ma, Heng Zhang, Chunlei Feng, Hongqing Wei, Wei Wang, Wei Chen, Fengying Zhang, Lingbo Ma
The complete mitochondrial genome information can play an important role in species identification, phylogeny, evolution research, genetic differentiation, and diversity. Here we determined the complete mitochondrial genome sequence of Elagatis bipinnulata (Perciformes: Carangidae). This circular genome was 16 542 bp in length, and included all 37 typical mitochondrial genes, containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a putative control region. The gene order of E. bipinnulata was identical to that observed in most other vertebrates...
December 28, 2015: Mitochondrial DNA
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