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Frontiers in Computational Neuroscience

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https://www.readbyqxmd.com/read/29123478/neural-synchronization-from-the-perspective-of-non-linear-dynamics
#1
Ramon Guevara Erra, Jose L Perez Velazquez, Michael Rosenblum
No abstract text is available yet for this article.
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29123477/the-effects-of-medium-spiny-neuron-morphologcial-changes-on-basal-ganglia-network-under-external-electric-field-a-computational-modeling-study
#2
Xiaohan Zhang, Shenquan Liu, Feibiao Zhan, Jing Wang, Xiaofang Jiang
The damage of dopaminergic neurons that innervate the striatum has been considered to be the proximate cause of Parkinson's disease (PD). In the dopamine-denervated state, the loss of dendritic spines and the decrease of dendritic length may prevent medium spiny neuron (MSN) from receiving too much excitatory stimuli from the cortex, thereby reducing the symptom of Parkinson's disease. However, the reduction in dendritic spine density obtained by different experiments is significantly different. We developed a biological-based network computational model to quantify the effect of dendritic spine loss and dendrites tree degeneration on basal ganglia (BG) signal regulation...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29114215/feasibility-of-3d-reconstruction-of-neural-morphology-using-expansion-microscopy-and-barcode-guided-agglomeration
#3
Young-Gyu Yoon, Peilun Dai, Jeremy Wohlwend, Jae-Byum Chang, Adam H Marblestone, Edward S Boyden
We here introduce and study the properties, via computer simulation, of a candidate automated approach to algorithmic reconstruction of dense neural morphology, based on simulated data of the kind that would be obtained via two emerging molecular technologies-expansion microscopy (ExM) and in-situ molecular barcoding. We utilize a convolutional neural network to detect neuronal boundaries from protein-tagged plasma membrane images obtained via ExM, as well as a subsequent supervoxel-merging pipeline guided by optical readout of information-rich, cell-specific nucleic acid barcodes...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29093676/bioinspired-technologies-to-connect-musculoskeletal-mechanobiology-to-the-person-for-training-and-rehabilitation
#4
REVIEW
Claudio Pizzolato, David G Lloyd, Rod S Barrett, Jill L Cook, Ming H Zheng, Thor F Besier, David J Saxby
Musculoskeletal tissues respond to optimal mechanical signals (e.g., strains) through anabolic adaptations, while mechanical signals above and below optimal levels cause tissue catabolism. If an individual's physical behavior could be altered to generate optimal mechanical signaling to musculoskeletal tissues, then targeted strengthening and/or repair would be possible. We propose new bioinspired technologies to provide real-time biofeedback of relevant mechanical signals to guide training and rehabilitation...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29093675/a-factor-graph-description-of-deep-temporal-active-inference
#5
Bert de Vries, Karl J Friston
Active inference is a corollary of the Free Energy Principle that prescribes how self-organizing biological agents interact with their environment. The study of active inference processes relies on the definition of a generative probabilistic model and a description of how a free energy functional is minimized by neuronal message passing under that model. This paper presents a tutorial introduction to specifying active inference processes by Forney-style factor graphs (FFG). The FFG framework provides both an insightful representation of the probabilistic model and a biologically plausible inference scheme that, in principle, can be automatically executed in a computer simulation...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29089882/a-route-to-chaotic-behavior-of-single-neuron-exposed-to-external-electromagnetic-radiation
#6
Peihua Feng, Ying Wu, Jiazhong Zhang
Non-linear behaviors of a single neuron described by Fitzhugh-Nagumo (FHN) neuron model, with external electromagnetic radiation considered, is investigated. It is discovered that with external electromagnetic radiation in form of a cosine function, the mode selection of membrane potential occurs among periodic, quasi-periodic, and chaotic motions as increasing the frequency of external transmembrane current, which is selected as a sinusoidal function. When the frequency is small or large enough, periodic, and quasi-periodic motions are captured alternatively...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29085291/the-effects-of-gabaergic-polarity-changes-on-episodic-neural-network-activity-in-developing-neural-systems
#7
Wilfredo Blanco, Richard Bertram, Joël Tabak
Early in development, neural systems have primarily excitatory coupling, where even GABAergic synapses are excitatory. Many of these systems exhibit spontaneous episodes of activity that have been characterized through both experimental and computational studies. As development progress the neural system goes through many changes, including synaptic remodeling, intrinsic plasticity in the ion channel expression, and a transformation of GABAergic synapses from excitatory to inhibitory. What effect each of these, and other, changes have on the network behavior is hard to know from experimental studies since they all happen in parallel...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29081743/the-propagation-of-movement-variability-in-time-a-methodological-approach-for-discrete-movements-with-multiple-degrees-of-freedom
#8
Melanie Krüger, Andreas Straube, Thomas Eggert
In recent years, theory-building in motor neuroscience and our understanding of the synergistic control of the redundant human motor system has significantly profited from the emergence of a range of different mathematical approaches to analyze the structure of movement variability. Approaches such as the Uncontrolled Manifold method or the Noise-Tolerance-Covariance decomposition method allow to detect and interpret changes in movement coordination due to e.g., learning, external task constraints or disease, by analyzing the structure of within-subject, inter-trial movement variability...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29075187/predictive-place-cell-sequences-for-goal-finding-emerge-from-goal-memory-and-the-cognitive-map-a-computational-model
#9
Lorenz Gönner, Julien Vitay, Fred H Hamker
Hippocampal place-cell sequences observed during awake immobility often represent previous experience, suggesting a role in memory processes. However, recent reports of goals being overrepresented in sequential activity suggest a role in short-term planning, although a detailed understanding of the origins of hippocampal sequential activity and of its functional role is still lacking. In particular, it is unknown which mechanism could support efficient planning by generating place-cell sequences biased toward known goal locations, in an adaptive and constructive fashion...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29066966/signal-transmission-of-biological-reaction-diffusion-system-by-using-synchronization
#10
Lingli Zhou, Jianwei Shen
Molecular signal transmission in cell is very crucial for information exchange. How to understand its transmission mechanism has attracted many researchers. In this paper, we prove that signal transmission problem between neural tumor molecules and drug molecules can be achieved by synchronous control. To achieve our purpose, we derive the Fokker-Plank equation by using the Langevin equation and theory of random walk, this is a model which can express the concentration change of neural tumor molecules. Second, according to the biological character that vesicles in cell can be combined with cell membrane to release the cargo which plays a role of signal transmission, we preliminarily analyzed the mechanism of tumor-drug molecular interaction...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29051730/dynamical-graph-theory-networks-methods-for-the-analysis-of-sparse-functional-connectivity-networks-and-for-determining-pinning-observability-in-brain-networks
#11
Anke Meyer-Bäse, Rodney G Roberts, Ignacio A Illan, Uwe Meyer-Bäse, Marc Lobbes, Andreas Stadlbauer, Katja Pinker-Domenig
Neuroimaging in combination with graph theory has been successful in analyzing the functional connectome. However almost all analysis are performed based on static graph theory. The derived quantitative graph measures can only describe a snap shot of the disease over time. Neurodegenerative disease evolution is poorly understood and treatment strategies are consequently only of limited efficiency. Fusing modern dynamic graph network theory techniques and modeling strategies at different time scales with pinning observability of complex brain networks will lay the foundation for a transformational paradigm in neurodegnerative diseases research regarding disease evolution at the patient level, treatment response evaluation and revealing some central mechanism in a network that drives alterations in these diseases...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29046631/development-of-a-bayesian-estimator-for-audio-visual-integration-a-neurocomputational-study
#12
Mauro Ursino, Andrea Crisafulli, Giuseppe di Pellegrino, Elisa Magosso, Cristiano Cuppini
The brain integrates information from different sensory modalities to generate a coherent and accurate percept of external events. Several experimental studies suggest that this integration follows the principle of Bayesian estimate. However, the neural mechanisms responsible for this behavior, and its development in a multisensory environment, are still insufficiently understood. We recently presented a neural network model of audio-visual integration (Neural Computation, 2017) to investigate how a Bayesian estimator can spontaneously develop from the statistics of external stimuli...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29033811/altered-local-spatiotemporal-consistency-of-resting-state-bold-signals-in-patients-with-generalized-tonic-clonic-seizures
#13
Shuai Ma, Sisi Jiang, Rui Peng, Qiong Zhu, Hongbin Sun, Jianfu Li, Xiaoyan Jia, Ilan Goldberg, Liang Yu, Cheng Luo
The purpose of this study was to evaluate the spatiotemporal Consistency of spontaneous activities in local brain regions in patients with generalized tonic-clonic seizures (GTCS). The resting-state fMRI data were acquired from nineteen patients with GTCS and twenty-two matched healthy subjects. FOur-dimensional (spatiotemporal) Consistency of local neural Activities (FOCA) metric was used to analyze the spontaneous activity in whole brain. The FOCA difference between two groups were detected using a two sample t-test analysis...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/29033810/cooperation-and-competition-with-hyperscanning-methods-review-and-future-application-to-emotion-domain
#14
REVIEW
Michela Balconi, Maria E Vanutelli
Cooperation and competition, as two common and opposite examples of interpersonal dynamics, are thought to be reflected by different cognitive, neural, and behavioral patterns. According to the conventional approach, they have been explored by measuring subjects' reactions during individual performance or turn-based interactions in artificial settings, that don't allow on-line, ecological enactment of real-life social exchange. Considering the importance of these factors, and accounting for the complexity of such phenomena, the hyperscanning approach emerged as a multi-subject paradigm since it allows the simultaneous recording of the brain activity from multiple participants interacting...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28970791/the-slow-dynamics-of-intracellular-sodium-concentration-increase-the-time-window-of-neuronal-integration-a-simulation-study
#15
Asaph Zylbertal, Yosef Yarom, Shlomo Wagner
Changes in intracellular Na(+) concentration ([Na(+)]i) are rarely taken into account when neuronal activity is examined. As opposed to Ca(2+), [Na(+)]i dynamics are strongly affected by longitudinal diffusion, and therefore they are governed by the morphological structure of the neurons, in addition to the localization of influx and efflux mechanisms. Here, we examined [Na(+)]i dynamics and their effects on neuronal computation in three multi-compartmental neuronal models, representing three distinct cell types: accessory olfactory bulb (AOB) mitral cells, cortical layer V pyramidal cells, and cerebellar Purkinje cells...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28955216/local-directional-probability-optimization-for-quantification-of-blurred-gray-white-matter-junction-in-magnetic-resonance-image
#16
Xiaoxia Qu, Jian Yang, Danni Ai, Hong Song, Luosha Zhang, Yongtian Wang, Tingzhu Bai, Wilfried Philips
The blurred gray/white matter junction is an important feature of focal cortical dysplasia (FCD) lesions. FCD is the main cause of epilepsy and can be detected through magnetic resonance (MR) imaging. Several earlier studies have focused on computing the gradient magnitude of the MR image and used the resulting map to model the blurred gray/white matter junction. However, gradient magnitude cannot quantify the blurred gray/white matter junction. Therefore, we proposed a novel algorithm called local directional probability optimization (LDPO) for detecting and quantifying the width of the gray/white matter boundary (GWB) within the lesional areas...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28943847/modeling-search-behaviors-during-the-acquisition-of-expertise-in-a-sequential-decision-making-task
#17
Cristóbal Moënne-Loccoz, Rodrigo C Vergara, Vladimir López, Domingo Mery, Diego Cosmelli
Our daily interaction with the world is plagued of situations in which we develop expertise through self-motivated repetition of the same task. In many of these interactions, and especially when dealing with computer and machine interfaces, we must deal with sequences of decisions and actions. For instance, when drawing cash from an ATM machine, choices are presented in a step-by-step fashion and a specific sequence of choices must be performed in order to produce the expected outcome. But, as we become experts in the use of such interfaces, is it possible to identify specific search and learning strategies? And if so, can we use this information to predict future actions? In addition to better understanding the cognitive processes underlying sequential decision making, this could allow building adaptive interfaces that can facilitate interaction at different moments of the learning curve...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28943846/a-computational-model-for-the-automatic-diagnosis-of-attention-deficit-hyperactivity-disorder-based-on-functional-brain-volume
#18
Lirong Tan, Xinyu Guo, Sheng Ren, Jeff N Epstein, Long J Lu
In this paper, we investigated the problem of computer-aided diagnosis of Attention Deficit Hyperactivity Disorder (ADHD) using machine learning techniques. With the ADHD-200 dataset, we developed a Support Vector Machine (SVM) model to classify ADHD patients from typically developing controls (TDCs), using the regional brain volumes as predictors. Conventionally, the volume of a brain region was considered to be an anatomical feature and quantified using structural magnetic resonance images. One major contribution of the present study was that we had initially proposed to measure the regional brain volumes using fMRI images...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28932190/empirical-evaluation-of-voluntarily-activatable-muscle-synergies
#19
Shunta Togo, Hiroshi Imamizu
The muscle synergy hypothesis assumes that individual muscle synergies are independent of each other and voluntarily controllable. However, this assumption has not been empirically tested. This study tested if human subjects can voluntarily activate individual muscle synergies extracted by non-negative matrix factorization (NMF), the standard mathematical method for synergy extraction. We defined the activation of a single muscle synergy as the generation of a muscle activity pattern vector parallel to the single muscle synergy vector...
2017: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/28912707/methodological-choices-in-muscle-synergy-analysis-impact-differentiation-of-physiological-characteristics-following-stroke
#20
Caitlin L Banks, Mihir M Pai, Theresa E McGuirk, Benjamin J Fregly, Carolynn Patten
Muscle synergy analysis (MSA) is a mathematical technique that reduces the dimensionality of electromyographic (EMG) data. Used increasingly in biomechanics research, MSA requires methodological choices at each stage of the analysis. Differences in methodological steps affect the overall outcome, making it difficult to compare results across studies. We applied MSA to EMG data collected from individuals post-stroke identified as either responders (RES) or non-responders (nRES) on the basis of a critical post-treatment increase in walking speed...
2017: Frontiers in Computational Neuroscience
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