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Forensic Science International. Genetics

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https://www.readbyqxmd.com/read/28342795/genetic-variation-of-17-autosomal-str-loci-in-the-zhuang-ethnic-minority-from-guangxi-zhuang-autonomous-region-in-the-south-of-china
#1
LETTER
Fei Guo, Jun Li, Teju Wei, Qiansu Ye, Zucong Chen
No abstract text is available yet for this article.
March 16, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28343098/developmental-validation-of-qiagen-investigator-%C3%A2-24plex-qs-kit-and-investigator-%C3%A2-24plex-go-kit-two-6-dye-multiplex-assays-for-the-extended-codis-core-loci
#2
Melanie Kraemer, Anke Prochnow, Michael Bussmann, Mario Scherer, Ralf Peist, Carolyn Steffen
The original CODIS database based on 13 core STR loci has been overwhelmingly successful for matching suspects with evidence. In order to increase the power of discrimination, reduce the possibility of adventitious matches, and expand global data sharing, the CODIS Core Loci Working Group determined the expansion of the CODIS core loci to 20 STR plus three additional "highly recommended" loci (SE33, DY391, Amelogenin) Hares, 2015, 2012 [1,2]. The QIAGEN Investigator 24plex QS and Investigator 24plex GO! Kits are 6-dye multiplex assays that contain all markers of the expanded 23 CODIS core loci along with a unique internal performance control that is co-amplified with the STR markers...
March 12, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28343097/strait-razor-v2s-advancing-sequence-based-str-allele-reporting-and-beyond-to-other-marker-systems
#3
Jonathan L King, Frank R Wendt, Jie Sun, Bruce Budowle
STRait Razor has provided the forensic community a free-to-use, open-source tool for short tandem repeat (STR) analysis of massively parallel sequencing (MPS) data. STRait Razor v2s (SRv2s) allows users to capture physically phased haplotypes within the full amplicon of both commercial (ForenSeq) and "early access" panels (PowerSeq, Mixture ID). STRait Razor v2s may be run in batch mode to facilitate population-level analysis and is supported by all Unix distributions (including MAC OS). Data are reported in tables in string (haplotype), length-based (e...
March 12, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28342797/forensic-evaluation-of-the-20-str-loci-in-the-population-of-croatia
#4
LETTER
Lucija Barbarić, Petar Ozretić, Ivana Horjan, Marina Korolija, Gordan Mršić
No abstract text is available yet for this article.
March 9, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28342798/allele-frequencies-and-other-forensic-parameters-of-the-hid-ion-ampliseq%C3%A2-identity-panel-markers-in-basques-using-the-ion-torrent-pgm%C3%A2-platform
#5
O García, A Soto, I Yurrebaso
The HID-Ion AmpliSeq™ Identity Panel amplifies 90 autosomal SNPs and 34 Y- SNPs with massively parallel sequencing (MPS) using the Ion Torrent PGM™ platform. In the present study, 105 Basques were analyzed to assess this panel. All loci were in Hardy-Weinberg equilibrium and no association between them was detected. Forensic parameters were calculated as 5.74×10(-36) for combined match probability and 99.99998% for combined power of exclusion. In conclusion, the HID Identity panel and the use of this new MPS technology are very promising tools for paternity testing and human identification in routine casework in the forensic field...
March 8, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28342368/set-up-of-cutoff-thresholds-for-kinship-determination-using-snp-loci
#6
Sohee Cho, Eun Soon Shin, Hyung Jin Yu, Ji Hyun Lee, Hee Jin Seo, Moon Young Kim, Soong Deok Lee
The usefulness of single nucleotide polymorphism (SNP) loci for kinship testing has been demonstrated in many case works, and suggested as a promising marker for relationship identification. For interpreting results based on the calculation of the likelihood ratio (LR) in kinship testing, it is important to prepare cutoffs for respective relatives which are dependent on genetic relatedness. For this, analysis using true pedigree data is significant and reliable as it reflects the actual frequencies of markers in the population...
March 8, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28324847/species-identification-in-forensic-samples-using-the-spindel-approach-a-ghep-isfg-inter-laboratory-collaborative-exercise
#7
Cíntia Alves, Rui Pereira, Lourdes Prieto, Mercedes Aler, Cesar R L Amaral, Cristina Arévalo, Gabriela Berardi, Florencia Di Rocco, Mariela Caputo, Cristian Hernandez Carmona, Laura Catelli, Heloísa Afonso Costa, Pavla Coufalova, Sandra Furfuro, Óscar García, Anibal Gaviria, Ana Goios, Juan José Builes Gómez, Alexis Hernández, Eva Del Carmen Betancor Hernández, Luís Miranda, David Parra, Susana Pedrosa, Maria João Anjos Porto, Maria de Lurdes Rebelo, Matteo Spirito, María Del Carmen Villalobos Torres, António Amorim, Filipe Pereira
DNA is a powerful tool available for forensic investigations requiring identification of species. However, it is necessary to develop and validate methods able to produce results in degraded and or low quality DNA samples with the high standards obligatory in forensic research. Here, we describe a voluntary collaborative exercise to test the recently developed Species Identification by Insertions/Deletions (SPInDel) method. The SPInDel kit allows the identification of species by the generation of numeric profiles combining the lengths of six mitochondrial ribosomal RNA (rRNA) gene regions amplified in a single reaction followed by capillary electrophoresis...
March 7, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28342796/making-progress-in-education-the-euroforgen-master-degree-pilot-project-in-forensic-genetics
#8
LETTER
Angel Carracedo, Emiliano Giardina, Ana Mosquera-Miguel, Laura Manzo, Vanesa Alvarez-Iglesias, Peter M Schneider
No abstract text is available yet for this article.
March 6, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28330674/genetic-polymorphisms-of-21-str-loci-in-goldeneye%C3%A2-dna-id-22nc-kit-for-chinese-li-ethnic-group
#9
LETTER
Xiaoliang Fu, Yanfang Liu, Zhihui Wang, Yadong Guo, Jifeng Cai, Lagabaiyila Zha
No abstract text is available yet for this article.
March 6, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28315820/evaluating-differential-nuclear-dna-yield-rates-and-osteocyte-numbers-among-human-bone-tissue-types-a-synchrotron-radiation-micro-ct-approach
#10
Janna M Andronowski, Amy Z Mundorff, Isaac V Pratt, Jon M Davoren, David M L Cooper
Molecular human identification has conventionally focused on DNA sampling from dense, weight-bearing cortical bone tissue, typically from femora or tibiae. A comparison of skeletal elements from three contemporary individuals demonstrated that elements with high quantities of cancellous bone yielded nuclear DNA at the highest rates, suggesting that preferentially sampling cortical bone may be suboptimal (Mundorff & Davoren, 2014). Despite these findings, the reason for the differential DNA yields between cortical and cancellous bone tissues remains unknown...
March 6, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28314239/likelihood-ratio-and-posterior-odds-in-forensic-genetics-two-sides-of-the-same-coin
#11
Amke Caliebe, Susan Walsh, Fan Liu, Manfred Kayser, Michael Krawczak
It has become widely accepted in forensics that, owing to a lack of sensible priors, the evidential value of matching DNA profiles in trace donor identification or kinship analysis is most sensibly communicated in the form of a likelihood ratio (LR). This restraint does not abate the fact that the posterior odds (PO) would be the preferred basis for returning a verdict. A completely different situation holds for Forensic DNA Phenotyping (FDP), which is aimed at predicting externally visible characteristics (EVCs) of a trace donor from DNA left behind at the crime scene...
March 6, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28302373/population-data-of-19-autosomal-str-loci-in-the-chinese-han-population-from-jiujiang-southern-china
#12
LETTER
Jun Yao, Ke-Yang Xiong, Yong Zhang
No abstract text is available yet for this article.
March 6, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28292727/analysis-of-dna-from-post-blast-pipe-bomb-fragments-for-identification-and-determination-of-ancestry
#13
Esiri Tasker, Bobby LaRue, Charity Beherec, David Gangitano, Sheree Hughes-Stamm
Improvised explosive devices (IEDs) such as pipe bombs are weapons used to detrimentally affect people and communities. A readily accessible brand of exploding targets called Tannerite® has been identified as a potential material for abuse as an explosive in pipe bombs. The ability to recover and genotype DNA from such weapons may be vital in the effort to identify suspects associated with these devices. While it is possible to recover DNA from post-blast fragments using short tandem repeat markers (STRs), genotyping success can be negatively affected by low quantities of DNA, degradation, and/or PCR inhibitors...
March 1, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28291711/population-data-for-21-autosomal-short-tandem-repeat-markers-in-the-arabic-population-of-the-united-arab-emirates
#14
LETTER
Rebecca J Jones, Wafa Al Tayyare, Guan K Tay, Habiba Alsafar, William H Goodwin
No abstract text is available yet for this article.
March 1, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28279935/evaluation-of-the-illumina-forenseq%C3%A2-dna-signature-prep-kit-mps-forensic-application-for-the-miseq-fgx%C3%A2-benchtop-sequencer
#15
Catarina Xavier, Walther Parson
Massively Parallel (Next Generation) Sequencing (MPS) technologies have recently been proven useful and successful in typing various markers relevant in forensic genetics, such as STRs, SNPs and mitochondrial genomes. Early studies investigated self-developed DNA libraries, commercially supplied kits are currently being made available to allow a smoother and gradual implementation of such technologies in forensic laboratories. The ForenSeq™ DNA Signature Prep Kit (Illumina, CA) is the first commercially available STR kit that can be used on the MiSeq FGx™ (Illumina, CA) benchtop high-throughput sequencer...
March 1, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28279634/population-data-for-20-autosomal-str-loci-in-the-yi-ethnic-minority-from-yunnan-province-southwest-china
#16
LETTER
Xiufeng Zhang, Liping Hu, Lei Du, Hecheng Zheng, Aiting Nie, Min Rao, Jing Bo Pang, Shengjie Nie
No abstract text is available yet for this article.
March 1, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28291712/allele-frequency-database-for-globalfiler%C3%A2-str-loci-in-australian-and-new-zealand-populations
#17
LETTER
Duncan Taylor, Jo-Anne Bright, Catherine McGovern, Sharon Neville, Denise Grover
We assign autosomal allele proportions for Caucasian, Asian, self-declared Aboriginal and pure Aboriginal populations from Australia and Caucasian and Eastern and Western Polynesian populations from New Zealand. Population sample sizes vary from 122 to 528. All populations underwent tests for the presence of allelic dependencies (i.e. departures from the expectations of Hardy Weinberg and Linkage equilibrium) and some large dependencies were observed in the Australian Aboriginal populations. We provide allele frequency files for all populations examined...
February 27, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28273507/flanking-region-variation-of-forenseq%C3%A2-dna-signature-prep-kit-str-and-snp-loci-in-yavapai-native-americans
#18
Frank R Wendt, Jonathan L King, Nicole M M Novroski, Jennifer D Churchill, Jillian Ng, Robert F Oldt, Kelly L McCulloh, Jessica A Weise, David Glenn Smith, Sreetharan Kanthaswamy, Bruce Budowle
Massively parallel sequencing (MPS) offers advantages over current capillary electrophoresis-based analysis of short tandem repeat (STR) loci for human identification testing. In particular STR repeat motif sequence information can be obtained, thereby increasing the discrimination power of some loci. While sequence variation within the repeat region is observed relatively frequently in some of the commonly used STRs, there is an additional degree of variation found in the flanking regions adjacent to the repeat motif...
February 27, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28254385/dna-methylation-based-forensic-age-prediction-using-artificial-neural-networks-and-next-generation-sequencing
#19
Athina Vidaki, David Ballard, Anastasia Aliferi, Thomas H Miller, Leon P Barron, Denise Syndercombe Court
The ability to estimate the age of the donor from recovered biological material at a crime scene can be of substantial value in forensic investigations. Aging can be complex and is associated with various molecular modifications in cells that accumulate over a person's lifetime including epigenetic patterns. The aim of this study was to use age-specific DNA methylation patterns to generate an accurate model for the prediction of chronological age using data from whole blood. In total, 45 age-associated CpG sites were selected based on their reported age coefficients in a previous extensive study and investigated using publicly available methylation data obtained from 1156 whole blood samples (aged 2-90 years) analysed with Illumina's genome-wide methylation platforms (27K/450K)...
February 26, 2017: Forensic Science International. Genetics
https://www.readbyqxmd.com/read/28273506/evaluation-of-the-precision-id-ancestry-panel-for-crime-case-work-a-snp-typing-assay-developed-for-typing-of-165-ancestral-informative-markers
#20
Vania Pereira, Helle S Mogensen, Claus Børsting, Niels Morling
The application of massive parallel sequencing (MPS) methodologies in forensic genetics is promising and it is gradually being implemented in forensic genetic case work. One of the major advantages of these technologies is that several traditional electrophoresis assays can be combined into one single MPS assay. This reduces both the amount of sample used and the time of the investigations. This study assessed the utility of the Precision ID Ancestry Panel (Thermo Fisher Scientific, Waltham, USA) in forensic genetics...
February 24, 2017: Forensic Science International. Genetics
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