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Computational and Mathematical Methods in Medicine

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https://www.readbyqxmd.com/read/28096896/registration-and-summation-of-respiratory-gated-or-breath-hold-pet-images-based-on-deformation-estimation-of-lung-from-ct-image
#1
Hideaki Haneishi, Masayuki Kanai, Yoshitaka Tamai, Atsushi Sakohira, Kazuyoshi Suga
Lung motion due to respiration causes image degradation in medical imaging, especially in nuclear medicine which requires long acquisition times. We have developed a method for image correction between the respiratory-gated (RG) PET images in different respiration phases or breath-hold (BH) PET images in an inconsistent respiration phase. In the method, the RG or BH-PET images in different respiration phases are deformed under two criteria: similarity of the image intensity distribution and smoothness of the estimated motion vector field (MVF)...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096895/towards-the-design-of-a-patient-specific-virtual-tumour
#2
Flavien Caraguel, Anne-Cécile Lesart, François Estève, Boudewijn van der Sanden, Angélique Stéphanou
The design of a patient-specific virtual tumour is an important step towards Personalized Medicine. However this requires to capture the description of many key events of tumour development, including angiogenesis, matrix remodelling, hypoxia, and cell state heterogeneity that will all influence the tumour growth kinetics and degree of tumour invasiveness. To that end, an integrated hybrid and multiscale approach has been developed based on data acquired on a preclinical mouse model as a proof of concept. Fluorescence imaging is exploited to build case-specific virtual tumours...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096894/a-novel-sample-selection-strategy-for-imbalanced-data-of-biomedical-event-extraction-with-joint-scoring-mechanism
#3
Yang Lu, Xiaolei Ma, Yinan Lu, Yuxin Zhou, Zhili Pei
Biomedical event extraction is an important and difficult task in bioinformatics. With the rapid growth of biomedical literature, the extraction of complex events from unstructured text has attracted more attention. However, the annotated biomedical corpus is highly imbalanced, which affects the performance of the classification algorithms. In this study, a sample selection algorithm based on sequential pattern is proposed to filter negative samples in the training phase. Considering the joint information between the trigger and argument of multiargument events, we extract triplets of multiargument events directly using a support vector machine classifier...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096893/determining-cutoff-point-of-ensemble-trees-based-on-sample-size-in-predicting-clinical-dose-with-dna-microarray-data
#4
Selen Yılmaz Isıkhan, Erdem Karabulut, Celal Reha Alpar
Background/Aim. Evaluating the success of dose prediction based on genetic or clinical data has substantially advanced recently. The aim of this study is to predict various clinical dose values from DNA gene expression datasets using data mining techniques. Materials and Methods. Eleven real gene expression datasets containing dose values were included. First, important genes for dose prediction were selected using iterative sure independence screening. Then, the performances of regression trees (RTs), support vector regression (SVR), RT bagging, SVR bagging, and RT boosting were examined...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096892/investigating-mutations-to-reduce-huntingtin-aggregation-by-increasing-htt-n-terminal-stability-and-weakening-interactions-with-polyq-domain
#5
Mohamed R Smaoui, Cody Mazza-Anthony, Jérôme Waldispühl
Huntington's disease is a fatal autosomal genetic disorder characterized by an expanded glutamine-coding CAG repeat sequence in the huntingtin (Htt) exon 1 gene. The Htt protein associated with the disease misfolds into toxic oligomers and aggregate fibril structures. Competing models for the misfolding and aggregation phenomena have suggested the role of the Htt-N-terminal region and the CAG trinucleotide repeats (polyQ domain) in affecting aggregation propensities and misfolding. In particular, one model suggests a correlation between structural stability and the emergence of toxic oligomers, whereas a second model proposes that molecular interactions with the extended polyQ domain increase aggregation propensity...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096891/phantom-validation-of-tc-99m-absolute-quantification-in-a-spect-ct-commercial-device
#6
Silvano Gnesin, Paulo Leite Ferreira, Jerome Malterre, Priscille Laub, John O Prior, Francis R Verdun
Aim. Similar to PET, absolute quantitative imaging is becoming available in commercial SPECT/CT devices. This study's goal was to assess quantitative accuracy of activity recovery as a function of image reconstruction parameters and count statistics in a variety of phantoms. Materials and Methods. We performed quantitative (99m)Tc-SPECT/CT acquisitions (Siemens Symbia Intevo, Erlangen, Germany) of a uniform cylindrical, NEMA/IEC, and an anthropomorphic abdominal phantom. Background activity concentrations tested ranged: 2-80 kBq/mL...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096890/defining-the-optimal-region-of-interest-for-hyperemia-grading-in-the-bulbar-conjunctiva
#7
María Luisa Sánchez Brea, Noelia Barreira Rodríguez, Antonio Mosquera González, Katharine Evans, Hugo Pena-Verdeal
Conjunctival hyperemia or conjunctival redness is a symptom that can be associated with a broad group of ocular diseases. Its levels of severity are represented by standard photographic charts that are visually compared with the patient's eye. This way, the hyperemia diagnosis becomes a nonrepeatable task that depends on the experience of the grader. To solve this problem, we have proposed a computer-aided methodology that comprises three main stages: the segmentation of the conjunctiva, the extraction of features in this region based on colour and the presence of blood vessels, and, finally, the transformation of these features into grading scale values by means of regression techniques...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28096889/detection-of-doppler-microembolic-signals-using-high-order-statistics
#8
Maroun Geryes, Sebastien Ménigot, Walid Hassan, Ali Mcheick, Jamal Charara, Jean-Marc Girault
Robust detection of the smallest circulating cerebral microemboli is an efficient way of preventing strokes, which is second cause of mortality worldwide. Transcranial Doppler ultrasound is widely considered the most convenient system for the detection of microemboli. The most common standard detection is achieved through the Doppler energy signal and depends on an empirically set constant threshold. On the other hand, in the past few years, higher order statistics have been an extensive field of research as they represent descriptive statistics that can be used to detect signal outliers...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28090215/multiple-linear-regressions-by-maximizing-the-likelihood-under-assumption-of-generalized-gauss-laplace-distribution-of-the-error
#9
Lorentz Jäntschi, Donatella Bálint, Sorana D Bolboacă
Multiple linear regression analysis is widely used to link an outcome with predictors for better understanding of the behaviour of the outcome of interest. Usually, under the assumption that the errors follow a normal distribution, the coefficients of the model are estimated by minimizing the sum of squared deviations. A new approach based on maximum likelihood estimation is proposed for finding the coefficients on linear models with two predictors without any constrictive assumptions on the distribution of the errors...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28070212/pulmonary-nodule-classification-with-deep-convolutional-neural-networks-on-computed-tomography-images
#10
Wei Li, Peng Cao, Dazhe Zhao, Junbo Wang
Computer aided detection (CAD) systems can assist radiologists by offering a second opinion on early diagnosis of lung cancer. Classification and feature representation play critical roles in false-positive reduction (FPR) in lung nodule CAD. We design a deep convolutional neural networks method for nodule classification, which has an advantage of autolearning representation and strong generalization ability. A specified network structure for nodule images is proposed to solve the recognition of three types of nodules, that is, solid, semisolid, and ground glass opacity (GGO)...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28070211/in-silico-investigation-into-cellular-mechanisms-of-cardiac-alternans-in-myocardial-ischemia
#11
Jiaqi Liu, Yinglan Gong, Ling Xia, Xiaopeng Zhao
Myocardial ischemia is associated with pathophysiological conditions such as hyperkalemia, acidosis, and hypoxia. These physiological disorders may lead to changes on the functions of ionic channels, which in turn form the basis for cardiac alternans. In this paper, we investigated the roles of hyperkalemia and calcium handling components played in the genesis of alternans in ischemia at the cellular level by using computational simulations. The results show that hyperkalemic reduced cell excitability and delayed recovery from inactivation of depolarization currents...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28070210/localized-patch-based-fuzzy-active-contours-for-image-segmentation
#12
Jiangxiong Fang, Hesheng Liu, Huaxiang Liu, Liting Zhang, Jun Liu
This paper presents a novel fuzzy region-based active contour model for image segmentation. By incorporating local patch-energy functional along each pixel of the evolving curve into the fuzziness of the energy, we construct a patch-based energy function without the regurgitation term. Its purpose is not only to make the active contour evolve very stably without the periodical initialization during the evolution but also to reduce the effect of noise. In particular, in order to reject local minimal of the energy functional, we utilize a direct method to calculate the energy alterations instead of solving the Euler-Lagrange equation of the underlying problem...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28053653/a-parallel-nonrigid-registration-algorithm-based-on-b-spline-for-medical-images
#13
Xiaogang Du, Jianwu Dang, Yangping Wang, Song Wang, Tao Lei
The nonrigid registration algorithm based on B-spline Free-Form Deformation (FFD) plays a key role and is widely applied in medical image processing due to the good flexibility and robustness. However, it requires a tremendous amount of computing time to obtain more accurate registration results especially for a large amount of medical image data. To address the issue, a parallel nonrigid registration algorithm based on B-spline is proposed in this paper. First, the Logarithm Squared Difference (LSD) is considered as the similarity metric in the B-spline registration algorithm to improve registration precision...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28053652/role-of-camkii-and-pka-in-early-afterdepolarization-of-human-ventricular-myocardium-cell-a-computational-model-study
#14
Ling Dai, Yunliang Zang, Dingchang Zheng, Ling Xia, Yinglan Gong
Early afterdepolarization (EAD) plays an important role in arrhythmogenesis. Many experimental studies have reported that Ca(2+)/calmodulin-dependent protein kinase II (CaMKII) and β-adrenergic signaling pathway are two important regulators. In this study, we developed a modified computational model of human ventricular myocyte to investigate the combined role of CaMKII and β-adrenergic signaling pathway on the occurrence of EADs. Our simulation results showed that (1) CaMKII overexpression facilitates EADs through the prolongation of late sodium current's (INaL) deactivation progress; (2) the combined effect of CaMKII overexpression and activation of β-adrenergic signaling pathway further increases the risk of EADs, where EADs could occur at shorter cycle length (2000 ms versus 4000 ms) and lower rapid delayed rectifier K(+) current (IKr) blockage (77% versus 85%)...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28053651/the-reliability-of-classification-of-terminal-nodes-in-guide-decision-tree-to-predict-the-nonalcoholic-fatty-liver-disease
#15
Mehdi Birjandi, Seyyed Mohammad Taghi Ayatollahi, Saeedeh Pourahmad
Tree structured modeling is a data mining technique used to recursively partition a dataset into relatively homogeneous subgroups in order to make more accurate predictions on generated classes. One of the classification tree induction algorithms, GUIDE, is a nonparametric method with suitable accuracy and low bias selection, which is used for predicting binary classes based on many predictors. In this tree, evaluating the accuracy of predicted classes (terminal nodes) is clinically of special importance. For this purpose, we used GUIDE classification tree in two statuses of equal and unequal misclassification cost in order to predict nonalcoholic fatty liver disease (NAFLD), considering 30 predictors...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28053650/lung-nodule-image-classification-based-on-local-difference-pattern-and-combined-classifier
#16
Keming Mao, Zhuofu Deng
This paper proposes a novel lung nodule classification method for low-dose CT images. The method includes two stages. First, Local Difference Pattern (LDP) is proposed to encode the feature representation, which is extracted by comparing intensity difference along circular regions centered at the lung nodule. Then, the single-center classifier is trained based on LDP. Due to the diversity of feature distribution for different class, the training images are further clustered into multiple cores and the multicenter classifier is constructed...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28050198/lung-cancer-classification-employing-proposed-real-coded-genetic-algorithm-based-radial-basis-function-neural-network-classifier
#17
I Jasmine Selvakumari Jeya, S N Deepa
A proposed real coded genetic algorithm based radial basis function neural network classifier is employed to perform effective classification of healthy and cancer affected lung images. Real Coded Genetic Algorithm (RCGA) is proposed to overcome the Hamming Cliff problem encountered with the Binary Coded Genetic Algorithm (BCGA). Radial Basis Function Neural Network (RBFNN) classifier is chosen as a classifier model because of its Gaussian Kernel function and its effective learning process to avoid local and global minima problem and enable faster convergence...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28050197/spectral-analysis-of-dynamic-pet-studies-a-review-of-20-years-of-method-developments-and-applications
#18
REVIEW
Mattia Veronese, Gaia Rizzo, Alessandra Bertoldo, Federico E Turkheimer
In Positron Emission Tomography (PET), spectral analysis (SA) allows the quantification of dynamic data by relating the radioactivity measured by the scanner in time to the underlying physiological processes of the system under investigation. Among the different approaches for the quantification of PET data, SA is based on the linear solution of the Laplace transform inversion whereas the measured arterial and tissue time-activity curves of a radiotracer are used to calculate the input response function of the tissue...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28050196/a-bioequivalence-test-by-the-direct-comparison-of-concentration-versus-time-curves-using-local-polynomial-smoothers
#19
Suyan Tian, Howard H Chang, Dana Orange, Jingkai Gu, Mayte Suárez-Fariñas
In order to test if two chemically or pharmaceutically equivalent products have the same efficacy and/or toxicity, a bioequivalence (BE) study is conducted. The 80%/125% rule is the most commonly used criteria for BE and states that BE cannot be claimed unless the 90% CIs for the ratio of selected pharmacokinetics (PK) parameters of the tested to the reference drug are within 0.8 to 1.25. Considering that estimates of these PK parameters are derived from the concentration-versus-time curves, a direct comparison between these curves motivates an alternative and more flexible approach to test BE...
2016: Computational and Mathematical Methods in Medicine
https://www.readbyqxmd.com/read/28044090/new-technique-for-automatic-segmentation-of-blood-vessels-in-ct-scan-images-of-liver-based-on-optimized-fuzzy-c-means-method
#20
Katayoon Ahmadi, Abbas Karimi, Babak Fouladi Nia
Automatic segmentation of medical CT scan images is one of the most challenging fields in digital image processing. The goal of this paper is to discuss the automatic segmentation of CT scan images to detect and separate vessels in the liver. The segmentation of liver vessels is very important in the liver surgery planning and identifying the structure of vessels and their relationship to tumors. Fuzzy C-means (FCM) method has already been proposed for segmentation of liver vessels. Due to classical optimization process, this method suffers lack of sensitivity to the initial values of class centers and segmentation of local minima...
2016: Computational and Mathematical Methods in Medicine
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