journal
MENU ▼
Read by QxMD icon Read
search

Plant Methods

journal
https://www.readbyqxmd.com/read/28717384/accelerating-root-system-phenotyping-of-seedlings-through-a-computer-assisted-processing-pipeline
#1
Lionel X Dupuy, Gladys Wright, Jacqueline A Thompson, Anna Taylor, Sebastien Dekeyser, Christopher P White, William T B Thomas, Mark Nightingale, John P Hammond, Neil S Graham, Catherine L Thomas, Martin R Broadley, Philip J White
BACKGROUND: There are numerous systems and techniques to measure the growth of plant roots. However, phenotyping large numbers of plant roots for breeding and genetic analyses remains challenging. One major difficulty is to achieve high throughput and resolution at a reasonable cost per plant sample. Here we describe a cost-effective root phenotyping pipeline, on which we perform time and accuracy benchmarking to identify bottlenecks in such pipelines and strategies for their acceleration...
2017: Plant Methods
https://www.readbyqxmd.com/read/28702072/development-of-a-phenotyping-platform-for-high-throughput-screening-of-nodal-root-angle-in-sorghum
#2
Dinesh C Joshi, Vijaya Singh, Colleen Hunt, Emma Mace, Erik van Oosterom, Richard Sulman, David Jordan, Graeme Hammer
BACKGROUND: In sorghum, the growth angle of nodal roots is a major component of root system architecture. It strongly influences the spatial distribution of roots of mature plants in the soil profile, which can impact drought adaptation. However, selection for nodal root angle in sorghum breeding programs has been restricted by the absence of a suitable high throughput phenotyping platform. The aim of this study was to develop a phenotyping platform for the rapid, non-destructive and digital measurement of nodal root angle of sorghum at the seedling stage...
2017: Plant Methods
https://www.readbyqxmd.com/read/28694843/quantifying-pruning-impacts-on-olive-tree-architecture-and-annual-canopy-growth-by-using-uav-based-3d-modelling
#3
F M Jiménez-Brenes, F López-Granados, A I de Castro, J Torres-Sánchez, N Serrano, J M Peña
BACKGROUND: Tree pruning is a costly practice with important implications for crop harvest and nutrition, pest and disease control, soil protection and irrigation strategies. Investigations on tree pruning usually involve tedious on-ground measurements of the primary tree crown dimensions, which also might generate inconsistent results due to the irregular geometry of the trees. As an alternative to intensive field-work, this study shows a innovative procedure based on combining unmanned aerial vehicle (UAV) technology and advanced object-based image analysis (OBIA) methodology for multi-temporal three-dimensional (3D) monitoring of hundreds of olive trees that were pruned with three different strategies (traditional, adapted and mechanical pruning)...
2017: Plant Methods
https://www.readbyqxmd.com/read/28690669/establishment-of-integrated-protocols-for-automated-high-throughput-kinetic-chlorophyll-fluorescence-analyses
#4
Henning Tschiersch, Astrid Junker, Rhonda C Meyer, Thomas Altmann
BACKGROUND: Automated plant phenotyping has been established as a powerful new tool in studying plant growth, development and response to various types of biotic or abiotic stressors. Respective facilities mainly apply non-invasive imaging based methods, which enable the continuous quantification of the dynamics of plant growth and physiology during developmental progression. However, especially for plants of larger size, integrative, automated and high throughput measurements of complex physiological parameters such as photosystem II efficiency determined through kinetic chlorophyll fluorescence analysis remain a challenge...
2017: Plant Methods
https://www.readbyqxmd.com/read/28670331/a-mobile-nmr-lab-for-leaf-phenotyping-in-the-field
#5
Maja Musse, Laurent Leport, Mireille Cambert, William Debrandt, Clément Sorin, Alain Bouchereau, François Mariette
BACKGROUND: Low field NMR has been used to investigate water status in various plant tissues. In plants grown in controlled conditions, the method was shown to be able to monitor leaf development as it could detect slight variations in senescence associated with structural modifications in leaf tissues. The aim of the present study was to demonstrate the potential of NMR to provide robust indicators of the leaf development stage in plants grown in the field, where leaves may develop less evenly due to environmental fluctuations...
2017: Plant Methods
https://www.readbyqxmd.com/read/28649269/a-comprehensive-technique-for-artificial-hybridization-in-chickpea-cicer-arietinum
#6
Shweta Kalve, Million Tadege
BACKGROUND: Two crossing techniques for hybridization of chickpea have been reported and include pollination after emasculation and pollination without emasculation. Success of crossing with emasculation varied from 5 to 17%; while the success rate varied from 20 to 50% by pollination without emasculation. The important reason for the low success rate of the two procedures could be lack of detailed information on the flowering stages chosen for crossing together with the environment where plants grow...
2017: Plant Methods
https://www.readbyqxmd.com/read/28638439/non-invasive-absolute-measurement-of-leaf-water-content-using-terahertz-quantum-cascade-lasers
#7
Lorenzo Baldacci, Mario Pagano, Luca Masini, Alessandra Toncelli, Giorgio Carelli, Paolo Storchi, Alessandro Tredicucci
BACKGROUND: Plant water resource management is one of the main future challenges to fight recent climatic changes. The knowledge of the plant water content could be indispensable for water saving strategies. Terahertz spectroscopic techniques are particularly promising as a non-invasive tool for measuring leaf water content, thanks to the high predominance of the water contribution to the total leaf absorption. Terahertz quantum cascade lasers (THz QCL) are one of the most successful sources of THz radiation...
2017: Plant Methods
https://www.readbyqxmd.com/read/28638438/real-time-monitoring-of-ptahmgb-activity-in-poplar-transactivation-assays
#8
José M Ramos-Sánchez, Paolo M Triozzi, Alicia Moreno-Cortés, Daniel Conde, Mariano Perales, Isabel Allona
BACKGROUND: Precise control of gene expression is essential to synchronize plant development with the environment. In perennial plants, transcriptional regulation remains poorly understood, mainly due to the long time required to perform functional studies. Transcriptional reporters based on luciferase have been useful to study circadian and diurnal regulation of gene expression, both by transcription factors and chromatin remodelers. The high mobility group proteins are considered transcriptional chaperones that also modify the chromatin architecture...
2017: Plant Methods
https://www.readbyqxmd.com/read/28638437/a-multiplex-pcr-for-rapid-identification-of-brassica-species-in-the-triangle-of-u
#9
Joshua C O Koh, Denise M Barbulescu, Sally Norton, Bob Redden, Phil A Salisbury, Sukhjiwan Kaur, Noel Cogan, Anthony T Slater
BACKGROUND: Within the Brassicaceae, six species from the genus Brassica are widely cultivated throughout the world as oilseed, condiment, fodder or vegetable crops. The genetic relationships among the six Brassica species are described by U's triangle model. Extensive shared traits and diverse morphotypes among Brassica species make identification and classification based on phenotypic data alone challenging and unreliable, especially when dealing with large germplasm collections. Consequently, a major issue for genebank collections is ensuring the correct identification of species...
2017: Plant Methods
https://www.readbyqxmd.com/read/28638436/in-vivo-label-free-mapping-of-the-effect-of-a-photosystem-ii-inhibiting-herbicide-in-plants-using-chlorophyll-fluorescence-lifetime
#10
Elizabeth Noble, Sunil Kumar, Frederik G Görlitz, Chris Stain, Chris Dunsby, Paul M W French
BACKGROUND: In order to better understand and improve the mode of action of agrochemicals, it is useful to be able to visualize their uptake and distribution in vivo, non-invasively and, ideally, in the field. Here we explore the potential of plant autofluorescence (specifically chlorophyll fluorescence) to provide a readout of herbicide action across the scales utilising multiphoton-excited fluorescence lifetime imaging, wide-field single-photon excited fluorescence lifetime imaging and single point fluorescence lifetime measurements via a fibre-optic probe...
2017: Plant Methods
https://www.readbyqxmd.com/read/28630643/improved-classification-accuracy-of-powdery-mildew-infection-levels-of-wine-grapes-by-spatial-spectral-analysis-of-hyperspectral-images
#11
Uwe Knauer, Andrea Matros, Tijana Petrovic, Timothy Zanker, Eileen S Scott, Udo Seiffert
BACKGROUND: Hyperspectral imaging is an emerging means of assessing plant vitality, stress parameters, nutrition status, and diseases. Extraction of target values from the high-dimensional datasets either relies on pixel-wise processing of the full spectral information, appropriate selection of individual bands, or calculation of spectral indices. Limitations of such approaches are reduced classification accuracy, reduced robustness due to spatial variation of the spectral information across the surface of the objects measured as well as a loss of information intrinsic to band selection and use of spectral indices...
2017: Plant Methods
https://www.readbyqxmd.com/read/28592987/an-efficient-protocol-for-perennial-ryegrass-mesophyll-protoplast-isolation-and-transformation-and-its-application-on-interaction-study-between-lpnol-and-lpnyc1
#12
Guohui Yu, Qiang Cheng, Zheni Xie, Bin Xu, Bingru Huang, Bingyu Zhao
BACKGROUND: Perennial ryegrass (Lolium perenne L.) is an important temperate grass used for turf and forage purposes. With the increasing accumulation of genomic and transcriptomic data of perennial ryegrass, an efficient protoplast and transient gene expression protocol is highly desirable for in vivo gene functional studies in its homologous system. RESULTS: In this report, a highly efficient protoplast isolation (5.6 × 10(7) protoplasts per gram of leaf material) and transient expression (plasmid transformation efficiency at 55...
2017: Plant Methods
https://www.readbyqxmd.com/read/28572833/development-of-high-throughput-methods-to-screen-disease-caused-by-rhizoctonia-solani-ag-2-1-in-oilseed-rape
#13
Fryni Drizou, Neil S Graham, Toby J A Bruce, Rumiana V Ray
BACKGROUND: Rhizoctonia solani (Kühn) is a soil-borne, necrotrophic fungus causing damping off, root rot and stem canker in many cultivated plants worldwide. Oilseed rape (OSR, Brassica napus) is the primary host for anastomosis group (AG) 2-1 of R. solani causing pre- and post-emergence damping-off resulting in death of seedlings and impaired crop establishment. Presently, there are no known resistant OSR genotypes and the main methods for disease control are fungicide seed treatments and cultural practices...
2017: Plant Methods
https://www.readbyqxmd.com/read/28546825/efficient-isolation-of-magnolia-protoplasts-and-the-application-to-subcellular-localization-of-mdehsf1
#14
Yamei Shen, Dong Meng, Kim McGrouther, Junhong Zhang, Lailiang Cheng
BACKGROUND: Magnolia is a woody ornamental plant, which is widely used in urban landscaping. However, its lengthy juvenile period and recalcitrance to regeneration impedes functional characterization of its genes. RESULTS: We developed an efficient protoplast isolation and transient expression system for Magnolia denudata × Magnolia acuminata 'Yellow River'. The highest yield of protoplasts was obtained from young leaves digested in 3% Cellulase R10, 0.8% Macerozyme R10, 0...
2017: Plant Methods
https://www.readbyqxmd.com/read/28546824/high-spatio-temporal-resolution-detection-of-chlorophyll-fluorescence-dynamics-from-a-single-chloroplast-with-confocal-imaging-fluorometer
#15
Yi-Chin Tseng, Shi-Wei Chu
BACKGROUND: Chlorophyll fluorescence (CF) is a key indicator to study plant physiology or photosynthesis efficiency. Conventionally, CF is characterized by fluorometers, which only allows ensemble measurement through wide-field detection. For imaging fluorometers, the typical spatial and temporal resolutions are on the order of millimeter and second, far from enough to study cellular/sub-cellular CF dynamics. In addition, due to the lack of optical sectioning capability, conventional imaging fluorometers cannot identify CF from a single cell or even a single chloroplast...
2017: Plant Methods
https://www.readbyqxmd.com/read/28539971/a-fast-efficient-chromatin-immunoprecipitation-method-for-studying-protein-dna-binding-in-arabidopsis-mesophyll-protoplasts
#16
Jeong Hwan Lee, Suhyun Jin, Sun Young Kim, Wanhui Kim, Ji Hoon Ahn
BACKGROUND: Binding of transcription factors to their target sequences is a primary step in the regulation of gene expression and largely determines gene regulatory networks. Chromatin immunoprecipitation (ChIP) is an indispensable tool used to investigate the binding of DNA-binding proteins (e.g., transcription factors) to their target sequences in vivo. ChIP assays require specific antibodies that recognize endogenous target transcription factors; however, in most cases, such specific antibodies are unavailable...
2017: Plant Methods
https://www.readbyqxmd.com/read/28539970/developing-transgenic-wheat-to-encounter-rusts-and-powdery-mildew-by-overexpressing-barley-chi26-gene-for-fungal-resistance
#17
Hala F Eissa, Sameh E Hassanien, Ahmed M Ramadan, Moustafa M El-Shamy, Osama M Saleh, Ahmed M Shokry, Mohamed Abdelsattar, Yasser B Morsy, Maher A El-Maghraby, Hussien F Alameldin, Sabah M Hassan, Gamal H Osman, Hesham T Mahfouz, Gharib A Gad El-Karim, Magdy A Madkour, Ahmed Bahieldin
BACKGROUND: The main aim of this study was to improve fungal resistance in bread wheat via transgenesis. Transgenic wheat plants harboring barley chitinase (chi26) gene, driven by maize ubi promoter, were obtained using biolistic bombardment, whereas the herbicide resistance gene, bar, driven by the CaMV 35S promoter was used as a selectable marker. RESULTS: Molecular analysis confirmed the integration, copy number, and the level of expression of the chi26 gene in four independent transgenic events...
2017: Plant Methods
https://www.readbyqxmd.com/read/28533812/visualization-of-zinc-dynamics-in-intact-plants-using-positron-imaging-of-commercially-available-65-zn
#18
Nobuo Suzui, Yong-Gen Yin, Satomi Ishii, Hitoshi Sekimoto, Naoki Kawachi
BACKGROUND: Positron imaging can be used to non-destructively visualize the dynamics of a positron-emitting radionuclide in vivo, and is therefore a tool for understanding the mechanisms of nutrient transport in intact plants. The transport of zinc, which is one of the most important nutrient elements for plants, has so far been visualized by positron imaging using (62)Zn (half-life: 9.2 h), which is manufactured in the limited number of facilities that have a cyclotron. In contrast, the positron-emitting radionuclide (65)Zn (half-life: 244 days) is commercially available worldwide...
2017: Plant Methods
https://www.readbyqxmd.com/read/28529536/mid-infrared-spectroscopy-combined-with-chemometrics-to-detect-sclerotinia-stem-rot-on-oilseed-rape-brassica-napus-l-leaves
#19
Chu Zhang, Xuping Feng, Jian Wang, Fei Liu, Yong He, Weijun Zhou
BACKGROUND: Detection of plant diseases in a fast and simple way is crucial for timely disease control. Conventionally, plant diseases are accurately identified by DNA, RNA or serology based methods which are time consuming, complex and expensive. Mid-infrared spectroscopy is a promising technique that simplifies the detection procedure for the disease. Mid-infrared spectroscopy was used to identify the spectral differences between healthy and infected oilseed rape leaves. Two different sample sets from two experiments were used to explore and validate the feasibility of using mid-infrared spectroscopy in detecting Sclerotinia stem rot (SSR) on oilseed rape leaves...
2017: Plant Methods
https://www.readbyqxmd.com/read/28529535/a-method-to-estimate-plant-density-and-plant-spacing-heterogeneity-application-to-wheat-crops
#20
Shouyang Liu, Fred Baret, Denis Allard, Xiuliang Jin, Bruno Andrieu, Philippe Burger, Matthieu Hemmerlé, Alexis Comar
BACKGROUND: Plant density and its non-uniformity drive the competition among plants as well as with weeds. They need thus to be estimated with small uncertainties accuracy. An optimal sampling method is proposed to estimate the plant density in wheat crops from plant counting and reach a given precision. RESULTS: Three experiments were conducted in 2014 resulting in 14 plots across varied sowing density, cultivars and environmental conditions. The coordinates of the plants along the row were measured over RGB high resolution images taken from the ground level...
2017: Plant Methods
journal
journal
41045
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"