journal
https://read.qxmd.com/read/36686215/mechanical-stress-driven-by-rigidity-sensing-governs-epithelial-stability
#21
JOURNAL ARTICLE
Surabhi Sonam, Lakshmi Balasubramaniam, Shao-Zhen Lin, Ying Ming Yow Ivan, Irina Pi Jaumà, Cecile Jebane, Marc Karnat, Yusuke Toyama, Philippe Marcq, Jacques Prost, René-Marc Mège, Jean-François Rupprecht, Benoît Ladoux
Epithelia act as a barrier against environmental stress and abrasion and in vivo they are continuously exposed to environments of various mechanical properties. The impact of this environment on epithelial integrity remains elusive. By culturing epithelial cells on 2D hydrogels, we observe a loss of epithelial monolayer integrity through spontaneous hole formation when grown on soft substrates. Substrate stiffness triggers an unanticipated mechanical switch of epithelial monolayers from tensile on soft to compressive on stiff substrates...
January 2023: Nature Physics
https://read.qxmd.com/read/36660164/enhanced-statistical-sampling-reveals-microscopic-complexity-in-the-talin-mechanosensor-folding-energy-landscape
#22
JOURNAL ARTICLE
Rafael Tapia-Rojo, Marc Mora, Stephanie Board, Jane Walker, Rajaa Boujemaa-Paterski, Ohad Medalia, Sergi Garcia-Manyes
Statistical mechanics can describe the major conformational ensembles determining the equilibrium free-energy landscape of a folding protein. The challenge is to capture the full repertoire of low-occurrence conformations separated by high kinetic barriers that define complex landscapes. Computationally, enhanced sampling methods accelerate the exploration of molecular rare events. However, accessing the entire protein's conformational space in equilibrium experiments requires technological developments to enable extended observation times...
January 2023: Nature Physics
https://read.qxmd.com/read/37396880/flagella-like-beating-of-actin-bundles-driven-by-self-organized-myosin-waves
#23
JOURNAL ARTICLE
Marie Pochitaloff, Martin Miranda, Mathieu Richard, Atitheb Chaiyasitdhi, Yasuharu Takagi, Wenxiang Cao, Enrique M De La Cruz, James R Sellers, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin
Wave-like beating of eukaryotic cilia and flagella-threadlike protrusions found in many cells and microorganisms-is a classic example of spontaneous mechanical oscillations in biology. This type of self-organized active matter raises the question of the coordination mechanism between molecular motor activity and cytoskeletal filament bending. Here we show that in the presence of myosin motors, polymerizing actin filaments self-assemble into polar bundles that exhibit wave-like beating. Importantly, filament beating is associated with myosin density waves initiated at twice the frequency of the actin-bending waves...
October 2022: Nature Physics
https://read.qxmd.com/read/36524215/decoherence-and-revival-in-attosecond-charge-migration-driven-by-non-adiabatic-dynamics
#24
JOURNAL ARTICLE
Danylo T Matselyukh, Victor Despré, Nikolay V Golubev, Alexander I Kuleff, Hans Jakob Wörner
Attosecond charge migration is a periodic evolution of the charge density at specific sites of a molecule on a time scale defined by the energy intervals between the electronic states involved. Here, we report the observation of charge migration in neutral silane (SiH4 ) in 690 as, its decoherence within 15 fs, and its revival after 40-50 fs, using X-ray attosecond transient absorption spectroscopy. We observe the migration of charge as pairs of quantum beats with a characteristic spectral phase in the transient spectrum, in agreement with theory...
October 2022: Nature Physics
https://read.qxmd.com/read/37220497/membrane-ruffling-is-a-mechanosensor-of-extracellular-fluid-viscosity
#25
JOURNAL ARTICLE
Matthew Pittman, Ernest Iu, Keva Li, Mingjiu Wang, Junjie Chen, Nilay Taneja, Myung Hyun Jo, Seungman Park, Wei-Hung Jung, Le Liang, Ishan Barman, Taekjip Ha, Stavros Gaitanaros, Jian Liu, Dylan Burnette, Sergey Plotnikov, Yun Chen
Cell behaviour is affected by the physical forces and mechanical properties of the cells and of their microenvironment. The viscosity of extracellular fluid - a component of the cellular microenvironment - can vary by orders of magnitude, but its effect on cell behaviour remains largely unexplored. Using bio-compatible polymers to increase the viscosity of the culture medium, we characterize how viscosity affects cell behaviour. We find that multiple types of adherent cells respond in an unexpected but similar manner to elevated viscosity...
September 2022: Nature Physics
https://read.qxmd.com/read/36281344/the-optimal-strategy-balancing-risk-and-speed-predicts-dna-damage-checkpoint-override-times
#26
JOURNAL ARTICLE
Ahmad Sadeghi, Roxane Dervey, Vojislav Gligorovski, Marco Labagnara, Sahand Jamal Rahi
Checkpoints arrest biological processes allowing time for error correction. The phenomenon of checkpoint override (also known as checkpoint adaptation, slippage, or leakage), during cellular self-replication is biologically critical but currently lacks a quantitative, functional, or system-level understanding. To uncover fundamental laws governing error-correction systems, we derived a general theory of optimal checkpoint strategies, balancing the trade-off between risk and self-replication speed. Mathematically, the problem maps onto the optimization of an absorbing boundary for a random walk...
July 2022: Nature Physics
https://read.qxmd.com/read/35855397/quasi-symmetry-protected-topology-in-a-semi-metal
#27
JOURNAL ARTICLE
Chunyu Guo, Lunhui Hu, Carsten Putzke, Jonas Diaz, Xiangwei Huang, Kaustuv Manna, Feng-Ren Fan, Chandra Shekhar, Yan Sun, Claudia Felser, Chaoxing Liu, B Andrei Bernevig, Philip J W Moll
The crystal symmetry of a material dictates the type of topological band structures it may host, and therefore symmetry is the guiding principle to find topological materials. Here we introduce an alternative guiding principle, which we call 'quasi-symmetry'. This is the situation where a Hamiltonian has an exact symmetry at lower-order that is broken by higher-order perturbation terms. This enforces finite but parametrically small gaps at some low-symmetry points in momentum space. Untethered from the restraints of symmetry, quasi-symmetries eliminate the need for fine-tuning as they enforce that sources of large Berry curvature will occur at arbitrary chemical potentials...
July 2022: Nature Physics
https://read.qxmd.com/read/37152719/macromolecular-crowding-limits-growth-under-pressure
#28
JOURNAL ARTICLE
Baptiste Alric, Cécile Formosa-Dague, Etienne Dague, Liam J Holt, Morgan Delarue
Cells that grow in confined spaces eventually build up mechanical compressive stress. This growth-induced pressure (GIP) decreases cell growth. GIP is important in a multitude of contexts from cancer, to microbial infections, to biofouling, yet our understanding of its origin and molecular consequences remains limited. Here, we combine microfluidic confinement of the yeast Saccharomyces cerevisiae , with rheological measurements using genetically encoded multimeric nanoparticles (GEMs) to reveal that growth-induced pressure is accompanied with an increase in a key cellular physical property: macromolecular crowding...
April 2022: Nature Physics
https://read.qxmd.com/read/36506337/observation-of-vortices-and-vortex-stripes-in-a-dipolar-condensate
#29
JOURNAL ARTICLE
Lauritz Klaus, Thomas Bland, Elena Poli, Claudia Politi, Giacomo Lamporesi, Eva Casotti, Russell N Bisset, Manfred J Mark, Francesca Ferlaino
Quantized vortices are a prototypical feature of superfluidity that have been observed in multiple quantum gas experiments. But the occurrence of vortices in dipolar quantum gases-a class of ultracold gases characterized by long-range anisotropic interactions-has not been reported yet. Here we exploit the anisotropic nature of the dipole-dipole interaction of a dysprosium Bose-Einstein condensate to induce angular symmetry breaking in an otherwise cylindrically symmetric pancake-shaped trap. Tilting the magnetic field towards the radial plane deforms the cloud into an ellipsoid, which is then set into rotation...
2022: Nature Physics
https://read.qxmd.com/read/36217363/ab-initio-predictions-link-the-neutron-skin-of-208-pb-to-nuclear-forces
#30
JOURNAL ARTICLE
Baishan Hu, Weiguang Jiang, Takayuki Miyagi, Zhonghao Sun, Andreas Ekström, Christian Forssén, Gaute Hagen, Jason D Holt, Thomas Papenbrock, S Ragnar Stroberg, Ian Vernon
Heavy atomic nuclei have an excess of neutrons over protons, which leads to the formation of a neutron skin whose thickness is sensitive to details of the nuclear force. This links atomic nuclei to properties of neutron stars, thereby relating objects that differ in size by orders of magnitude. The nucleus 208 Pb is of particular interest because it exhibits a simple structure and is experimentally accessible. However, computing such a heavy nucleus has been out of reach for ab initio theory. By combining advances in quantum many-body methods, statistical tools and emulator technology, we make quantitative predictions for the properties of 208 Pb starting from nuclear forces that are consistent with symmetries of low-energy quantum chromodynamics...
2022: Nature Physics
https://read.qxmd.com/read/36217362/josephson-diode-effect-from-cooper-pair-momentum-in-a-topological-semimetal
#31
JOURNAL ARTICLE
Banabir Pal, Anirban Chakraborty, Pranava K Sivakumar, Margarita Davydova, Ajesh K Gopi, Avanindra K Pandeya, Jonas A Krieger, Yang Zhang, Mihir Date, Sailong Ju, Noah Yuan, Niels B M Schröter, Liang Fu, Stuart S P Parkin
Cooper pairs in non-centrosymmetric superconductors can acquire finite centre-of-mass momentum in the presence of an external magnetic field. Recent theory predicts that such finite-momentum pairing can lead to an asymmetric critical current, where a dissipationless supercurrent can flow along one direction but not in the opposite one. Here we report the discovery of a giant Josephson diode effect in Josephson junctions formed from a type-II Dirac semimetal, NiTe2 . A distinguishing feature is that the asymmetry in the critical current depends sensitively on the magnitude and direction of an applied magnetic field and achieves its maximum value when the magnetic field is perpendicular to the current and is of the order of just 10 mT...
2022: Nature Physics
https://read.qxmd.com/read/36097630/transition-from-sub-rayleigh-anticrack-to-supershear-crack-propagation-in-snow-avalanches
#32
JOURNAL ARTICLE
Bertil Trottet, Ron Simenhois, Gregoire Bobillier, Bastian Bergfeld, Alec van Herwijnen, Chenfanfu Jiang, Johan Gaume
Snow slab avalanches, characterized by a distinct, broad fracture line, are released following anticrack propagation in highly porous weak snow layers buried below cohesive slabs. The anticrack mechanism is driven by the volumetric collapse of the weak layer, which leads to the closure of crack faces and to the onset of frictional contact. Here, on the basis of snow fracture experiments, full-scale avalanche measurements and numerical simulations, we report the existence of a transition from sub-Rayleigh anticrack to supershear crack propagation...
2022: Nature Physics
https://read.qxmd.com/read/35847475/directional-ballistic-transport-in-the-two-dimensional-metal-pdcoo-2
#33
JOURNAL ARTICLE
Maja D Bachmann, Aaron L Sharpe, Graham Baker, Arthur W Barnard, Carsten Putzke, Thomas Scaffidi, Nabhanila Nandi, Philippa H McGuinness, Elina Zhakina, Michal Moravec, Seunghyun Khim, Markus König, David Goldhaber-Gordon, Douglas A Bonn, Andrew P Mackenzie, Philip J W Moll
In an idealized infinite crystal, the material properties are constrained by the symmetries of the unit cell. The point-group symmetry is broken by the sample shape of any finite crystal, but this is commonly unobservable in macroscopic metals. To sense the shape-induced symmetry lowering in such metals, long-lived bulk states originating from an anisotropic Fermi surface are needed. Here we show how a strongly facetted Fermi surface and the long quasiparticle mean free path present in microstructures of PdCoO2 yield an in-plane resistivity anisotropy that is forbidden by symmetry on an infinite hexagonal lattice...
2022: Nature Physics
https://read.qxmd.com/read/35583413/erratum-publisher-correction-non-specific-adhesive-forces-between-filaments-and-membraneless-organelles
#34
Thomas J Böddeker, Kathryn A Rosowski, Doris Berchtold, Leonidas Emmanouilidis, Yaning Han, Frédéric H T Allain, Robert W Style, Lucas Pelkmans, Eric R Dufresne
[This corrects the article DOI: 10.1038/s41567-022-01537-8.].
2022: Nature Physics
https://read.qxmd.com/read/35582428/non-specific-adhesive-forces-between-filaments-and-membraneless-organelles
#35
JOURNAL ARTICLE
Thomas J Böddeker, Kathryn A Rosowski, Doris Berchtold, Leonidas Emmanouilidis, Yaning Han, Frédéric H T Allain, Robert W Style, Lucas Pelkmans, Eric R Dufresne
Many membraneless organelles are liquid-like domains that form inside the active, viscoelastic environment of living cells through phase separation. To investigate the potential coupling of phase separation with the cytoskeleton, we quantify the structural correlations of membraneless organelles (stress granules) and cytoskeletal filaments (microtubules) in a human-derived epithelial cell line. We find that microtubule networks are substantially denser in the vicinity of stress granules. When microtubules are depolymerized, the sub-units localize near the surface of the stress granules...
2022: Nature Physics
https://read.qxmd.com/read/35242199/clonal-dominance-in-excitable-cell-networks
#36
JOURNAL ARTICLE
Jasmin Imran Alsous, Jan Rozman, Robert A Marmion, Andrej Košmrlj, Stanislav Y Shvartsman
Clonal dominance arises when the descendants (clones) of one or a few founder cells contribute disproportionally to the final structure during collective growth [1-8]. In contexts such as bacterial growth, tumorigenesis, and stem cell reprogramming [2-4], this phenomenon is often attributed to pre-existing propensities for dominance, while in stem cell homeostasis, neutral drift dynamics are invoked [5,6]. The mechanistic origin of clonal dominance during development, where it is increasingly documented [1,6-8], is less understood...
December 2021: Nature Physics
https://read.qxmd.com/read/35035514/escherichia-coli-chemotaxis-is-information-limited
#37
JOURNAL ARTICLE
H H Mattingly, K Kamino, B B Machta, T Emonet
Organisms acquire and use information from their environment to guide their behaviour. However, it is unclear whether this information quantitatively limits their behavioural performance. Here, we relate information to the ability of Escherichia coli to navigate up chemical gradients, the behaviour known as chemotaxis. First, we derive a theoretical limit on the speed with which cells climb gradients, given the rate at which they acquire information. Next, we measure cells' gradient-climbing speeds and the rate of information acquisition by their chemotaxis signaling pathway...
December 2021: Nature Physics
https://read.qxmd.com/read/35721781/surface-tension-induced-budding-drives-alveologenesis-in-human-mammary-gland-organoids
#38
JOURNAL ARTICLE
Pablo A Fernández, Benedikt Buchmann, Andriy Goychuk, Lisa K Engelbrecht, Marion K Raich, Christina H Scheel, Erwin Frey, Andreas R Bausch
Organ development involves complex shape transformations driven by active mechanical stresses that sculpt the growing tissue 1,2 . Epithelial gland morphogenesis is a prominent example where cylindrical branches transform into spherical alveoli during growth3-5 . Here we show that this shape transformation is induced by a local change from anisotropic to isotropic tension within the epithelial cell layer of developing human mammary gland organoids. By combining laser ablation with optical force inference and theoretical analysis, we demonstrate that circumferential tension increases at the expense of axial tension through a reorientation of cells that correlates with the onset of persistent collective rotation around the branch axis...
October 2021: Nature Physics
https://read.qxmd.com/read/34531921/droplets-take-dna-by-force
#39
JOURNAL ARTICLE
Marina Feric
Single-molecule experiments can now quantify the surface forces that compete to package tethered DNA into a protein-rich condensate - providing much-needed mechanistic insight into the phase behaviour of the entangled genome in the nucleus.
September 2021: Nature Physics
https://read.qxmd.com/read/34512793/coherent-spin-wave-transport-in-an-antiferromagnet
#40
JOURNAL ARTICLE
J R Hortensius, D Afanasiev, M Matthiesen, R Leenders, R Citro, A V Kimel, R V Mikhaylovskiy, B A Ivanov, A D Caviglia
Magnonics is a research field complementary to spintronics, in which quanta of spin waves (magnons) replace electrons as information carriers, promising lower dissipation1-3 . The development of ultrafast nanoscale magnonic logic circuits calls for new tools and materials to generate coherent spin waves with frequencies as high, and wavelengths as short, as possible4,5 . Antiferromagnets can host spin waves at terahertz (THz) frequencies and are therefore seen as a future platform for the fastest and the least dissipative transfer of information6-11 ...
September 2021: Nature Physics
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