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Protein Journal

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https://www.readbyqxmd.com/read/27766508/polyclonal-antibody-development-against-purified-cc-nbs-lrr-like-protein-fragment-from-mature-lageneria-siceraria-seeds-and-immunolocalization
#1
Neha Kumari, Rajesh Kumar, Vandana Mishra, Savita Yadav
CC-NBS-LRR (CNL) plant proteins are related with highly conserved family of disease resistance protein distinguished by a coiled-coil domain, which plays an important role in innate immunity. The present study reports the purification and identification of CNL like protein fragment (CNL-LPF) by two step chromatography and matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF/MS), respectively. Furthermore, current study also illustrated the development of polyclonal antibody against purified CNL-LPF, which was used for immunolocalization of CNL-LPF in cytoplasm of cotyledon, using Fluorescence microscopy and Transmission electron microscopy...
October 20, 2016: Protein Journal
https://www.readbyqxmd.com/read/27757788/calprotectin-pegylation-enhanced-its-physical-and-structural-properties
#2
Abbas Shahsavari, Mehdi Azad, Naser Mobarra, Koorosh Goodarzvand Chegini, Nematollah Gheibi
Calprotectin is member of the S-100 protein family with a wide plethora of intra-and extracellular functions. Anticancer activities, antimicrobial effects and being a qualified disease marker are among the compelling features of this protein to be used as a pharmaceutical agent. However, there are several impediments to applications of protein pharmaceuticals including: proteolytic degradation, short circulating half-life, low solubility and immunogenicity. Pegylation is a common bioconjugation polymer capable of overcoming these drawbacks...
October 18, 2016: Protein Journal
https://www.readbyqxmd.com/read/27744549/a-dynamic-interaction-of-coomassie-dye-with-the-glycine-transporters-n-termini
#3
Anna Juhasova, Martina Baliova, Frantisek Jursky
Coomassie Brilliant Blue interacts with proteins and even though the interactions exhibit variation due to the amino acid content, reported dye interactions with individual proteins appear to be relatively stable. Here we report an atypical dynamic interaction of glycine transporters 1 and 2 N-termini with Coomassie dye, resulting in intramolecular interference with their Bradford assay. These proteins exhibit classic protein-Coomassie G-250 complex with absorption maximum at 595 nm, which within minutes starts to decrease and parallel increase of absorbance shoulders above 300 and 700 nm is observed...
October 15, 2016: Protein Journal
https://www.readbyqxmd.com/read/27858264/purification-and-characterization-of-lactate-dehydrogenase-in-the-foot-muscle-and-hepatopancreas-of-otala-lactea
#4
Isabelle A MacLean, Amanda M S Mattice, Nadine J Adam, Kenneth B Storey
Lactate dehydrogenase (LDH) has a crucial role in maintaining ATP production as the terminal enzyme in anaerobic glycolysis. This study will determine the effect of posttranslational modifications (PTMs) on the activity of LDH in the foot muscle and hepatopancreas of an estivating snail, Otala lactea. LDH in foot muscle of O. lactea was purified to homogeneity and partially purified in hepatopancreas in a two-step and three-step process, respectively. The kinetic properties and stability of these isoforms were determined where there was a significant difference in Km and I50 values with pyruvate and urea separately in foot muscle; however, hepatopancreas exhibited significant differences in Km and I50 in salt between control and stress...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27848106/allosteric-effect-of-adenosine-triphosphate-on-peptide-recognition-by-3-5-cyclic-adenosine-monophosphate-dependent-protein-kinase-catalytic-subunits
#5
Rait Kivi, Karina Solovjova, Tõiv Haljasorg, Piret Arukuusk, Jaak Järv
The allosteric influence of adenosine triphosphate (ATP) on the binding effectiveness of a series of peptide inhibitors with the catalytic subunit of 3'5'-cyclic adenosine monophosphate dependent protein kinase was investigated, and the dependence of this effect on peptide structure was analyzed. The allosteric effect was calculated as ratio of peptide binding effectiveness with the enzyme-ATP complex and with the free enzyme, quantified by the competitive inhibition of the enzyme in the presence of ATP excess, and by the enzyme-peptide complex denaturation assay, respectively It was found that the principle "better binding-stronger allostery" holds for interactions of the studied peptides with the enzyme, indicating that allostery and peptide binding with the free enzyme are governed by the same specificity pattern...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27844275/energetics-of-glutathione-binding-to-human-eukaryotic-elongation-factor-1-gamma-isothermal-titration-calorimetry-and-molecular-dynamics-studies
#6
Thabiso N Tshabalala, Mihai-Silviu Tomescu, Allan Prior, Vijayakumar Balakrishnan, Yasien Sayed, Heini W Dirr, Ikechukwu Achilonu
The energetics of ligand binding to human eukaryotic elongation factor 1 gamma (heEF1γ) was investigated using reduced glutathione (GSH), oxidised glutathione (GSSG), glutathione sulfonate and S-hexylglutathione as ligands. The experiments were conducted using isothermal titration calorimetry, and the findings were supported using computational studies. The data show that the binding of these ligands to heEF1γ is enthalpically favourable and entropically driven (except for the binding of GSSG). The full length heEF1γ binds GSSG with lower affinity (K d = 115 μM), with more hydrogen-bond contacts (ΔH = -73...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27832458/proteomic-profiles-reveal-the-function-of-different-vegetative-tissues-of-moringa-oleifera
#7
Lei Wang, Qiong Zou, Jinxing Wang, Junjie Zhang, Zeping Liu, Xiaoyang Chen
Moringa oleifera is a rich source of bioactive compounds and is widely used in traditional medicine and food for its nutritional value; however, the protein and peptide components of different tissues are rarely discussed. Here, we describe the first investigation of M. oleifera proteomes using mass spectrometry and bioinformatics methods. We aimed to elucidate the protein profiles of M. oleifera leaves, stem, bark, and root. Totally 202 proteins were identified from four vegetative organs. We identified 101 proteins from leaves, 51 from stem, 94 from bark and 67 from root, finding that only five proteins existed in both four vegetative parts...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27830420/organophosphate-hydrolyzing-enzymes-as-first-line-of-defence-against-nerve-agent-poisoning-perspectives-and-the-road-ahead
#8
REVIEW
A R Satvik Iyengar, Abhay H Pande
Nerve agents (NAs) are extremely neurotoxic synthetic organophosphate (OP) compounds exploited as weapons of mass destruction in terrorist attacks and chemical warfare. Considering the current world scenario, there is a persistent threat of NA-exposure to military personals and civilians. Various prophylactic and post-exposure treatments (such as atropine and oximes) available currently for NA-poisoning are inadequate and unsatisfactory and suffer from severe limitations. Hence, developing safe and effective treatment(s) against NA-poisoning is a critical necessity...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27826810/role-of-his101-in-the-protein-folding-unfolding-of-a-goose-type-lysozyme-from-ostrich-struthio-camelus-egg-white
#9
Chalermchai Somboonpatarakun, Tamo Fukamizo, Tomohiro Araki, Sompong Klaynongsruang
To understand the role of His101 in protein structure stabilization of goose-type (G-type) lysozyme, we conducted thermal unfolding/refolding experiments using native G-type lysozyme from ostrich egg white (nOEL), the recombinant G-type lysozyme (rOEL), and the mutant lysozyme, in which His101 is mutated to alanine (H101A-OEL). Thermal stability on lytic activity and in-gel refolding experiments provided similar profiles for all three OELs. Circular dichroism (CD) spectroscopy was used to determine the secondary structure of three OELs as a function of temperature...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27812887/changes-in-the-functional-activity-of-phi11-cro-protein-is-mediated-by-various-ions
#10
Avijit Das, Malabika Biswas
Phi11, a temperate bacteriophage of Staphylococcus aureus, has been found to harbor a cro repressor gene which facilitates Phi11 to adopt the lytic mode of development. The Cro protein has been found to bind very specifically to a 15-bp operator DNA, located in the Phi11 cI-cro intergenic region [1]. To investigate the effects exerted by different ions upon the interaction between Cro and its cognate operator DNA, we have employed gel shift assays as well as circular dichroism spectral analysis. In this communication, we have shown that NH4(+) and acetate(-) ions better facilitated the binding of Cro with its cognate operator as compared to Na(+), K(+) and Li(+)...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27812886/the-function-of-ile-x-ile-motif-in-the-oligomerization-and-chaperone-like-activity-of-small-heat-shock-protein-agsa-at-room-temperature
#11
Qiuhu Zhou, Xiaodong Shi, Kaiming Zhang, Chao Shi, Lixin Huang, Zhenzhan Chang
Small heat shock proteins assemble as large oligomers in vitro and exhibit ATP-independent chaperone activities. Ile-X-Ile motif is essential in both the function and oligomer formation. AgsA of Salmonella enterica serovar Typhimurium has been demonstrated to adopt large oligomeric structure and possess strong chaperone activity. Size exclusion chromatography, non-denaturing pore gradient PAGE, and negatively stain electron microscopic analysis of the various C-terminal truncated mutants were performed to investigate the role of Ile-X-Ile motif in the oligomer assembly of AgsA...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27804059/collagen-extract-from-marine-finfish-scales-as-a-potential-mosquito-larvicide
#12
K Muthumari, M Anand, M Maruthupandy
Collagen is a peptide being utilized in medical, health care, nutrient and decorative industry. Marine fish scales are one of the good sources of collagen, which is extracted using the advanced enzymatic digestion method. Scales of Sardinella longiceps (Oil Sardine) have a high proportion of collagen. This product is well absorbed with broad adaptive values that encourage the inclusion of nutriments. In this paper, we have performed the isolation and characterization of collagen from S. longiceps fish scales...
December 2016: Protein Journal
https://www.readbyqxmd.com/read/27601175/multi-modal-binding-of-a-self-peptide-by-hla-b-27-04-and-b-27-05-allelic-variants-but-not-b-27-09-or-b-27-06-variants-fresh-support-for-some-theories-explaining-differential-disease-association
#13
Manish Kumar Rana, Manni Luthra-Guptasarma
A self-derived-peptide with the same amino acid sequence (N-RRYLENGKETLQR-C) as residues 169-181 of the human leukocyte antigen (HLA) B27 heavy chain is known to bind to MHC Class I complexes containing the HLA-B27 heavy chain. This observation has been invoked previously in at least two different (but related) molecular explanations for the disease-association of the HLA-B27 allele. Here, we use a combination of fluorescence polarization, competitive inhibition and gel filtration chromatographic studies to show that a fluorescently-labeled peptide of the above sequence binds to two disease-associated subtypes of HLA-B27 (namely HLA-B*27:04 and HLA-B*27:05) but not to non-disease-associated subtypes (HLA-B*27:06 or HLA-B*27:09)...
September 7, 2016: Protein Journal
https://www.readbyqxmd.com/read/27601174/different-states-of-acrylodan-labeled-3-5-cyclic-adenosine-monophosphate-dependent-protein-kinase-catalytic-subunits-in-denaturant-solutions
#14
Rait Kivi, Jaak Järv
Fluorescence spectroscopy was used to differentiate between different states of acrylodan-labeled cAMP-dependent protein kinase catalytic subunits in urea, guanidine hydrochloride and 3-(N-morpholino)propanesulfonic acid solutions, by measuring changes in the emission spectrum of the protein-coupled dye, which is very sensitive to its microenvironment. Decomposition of the observed fluorescence spectra by a parameterized log-normal distribution function allowed the resolution of overlapping spectral bands and revealed the formation of three distinct protein states, denominated as native, denatured and unfolded structures...
September 6, 2016: Protein Journal
https://www.readbyqxmd.com/read/27601173/proteomic-analysis-of-parkin-isoforms-expression-in-different-rat-brain-areas
#15
Agata Grazia D'Amico, Grazia Maugeri, Rita Reitano, Sebastiano Cavallaro, Velia D'Agata
PARK2 gene's mutations are related to the familial form of juvenile Parkinsonism, also known as the autosomic recessive juvenile Parkinsonism. This gene encodes for parkin, a 465-amino acid protein. To date, a large number of parkin isoforms, generated by an alternative splicing mechanism, have been described. Currently, Gene Bank lists 27 rat PARK2 transcripts, which matches to 20 exclusive parkin alternative splice variants. Despite the existence of these isoforms, most of the studies carried out so far, have been focused only on the originally cloned parkin...
September 6, 2016: Protein Journal
https://www.readbyqxmd.com/read/27591855/biophysical-analysis-of-the-n-terminal-domain-from-the-human-protein-phosphatase-1-nuclear-targeting-subunit-pnuts-suggests-an-extended-transcription-factor-tfiis-like-fold
#16
Thomas Zacharchenko, Igor Barsukov, Daniel J Rigden, Daimark Bennett, Olga Mayans
Human protein phosphatase 1 nuclear targeting subunit (PNUTS) plays critical roles in DNA repair, cell growth and survival. The N-terminal domain of PNUTS mediates interactions with Tox4 and the phosphatase and tensin homolog PTEN, which are essential for the roles of this protein. To study this N-terminal domain, we have established its recombinant overproduction in E. coli utilizing NusA fusion. Upon removal of the tag, the remaining PNUTS sample is soluble and highly pure. We have characterized the domain using circular dichroism and nuclear magnetic resonance and analyzed its sequence using bioinformatics...
September 3, 2016: Protein Journal
https://www.readbyqxmd.com/read/27480193/a-numerical-approach-for-kinetic-analysis-of-the-nonexponential-thermoinactivation-process-of-uricase
#17
Jing Wu, Xiaolan Yang, Deqiang Wang, Xiaolei Hu, Juan Liao, JingJing Rao, Jun Pu, Chang-Guo Zhan, Fei Liao
Prior to the exponential decrease of activity of a uricase from Candida sp. during storage at 37 °C, there was a plateau period of about 4 days at pH 7.4, 12 days at pH 9.2, and about 22 days in the presence of 30 μM oxonate at pH 7.4 or 9.2, but no degradation of polypeptides and no activity of resolved homodimers. To reveal determinants of the plateau period, a dissociation model involving a serial of conformation intermediates of homotetramer were proposed for kinetic analysis of the thermoinactivation process...
August 2016: Protein Journal
https://www.readbyqxmd.com/read/27460579/purification-of-regucalcin-from-the-seminal-vesicular-fluid-a-calcium-binding-multi-functional-protein
#18
P Harikrishna, A M Shende, K K Reena, Jobin Thomas, S K Bhure
Regucalcin is a multi-functional protein having roles in calcium homeostasis as well as in anti-apoptotic, anti-prolific and anti-oxidative functions. Recently, it has been reported from the male reproductive tract, but its role in male reproduction needs further investigation; for which the native regucalcin of reproductive origin will be more appropriate. The gel exclusion chromatography followed by diethyl aminoethane cellulose chromatography and two-dimentional cellulose acetate membrane electrophoresis used for its purification are time consuming and less specific...
August 2016: Protein Journal
https://www.readbyqxmd.com/read/27402449/identification-of-miscellaneous-peptides-from-the-skin-secretion-of-the-european-edible-frog-pelophylax-kl-esculentus
#19
Xiaole Chen, He Wang, Lei Wang, Mei Zhou, Tianbao Chen, Chris Shaw
The chemical compounds synthesised and secreted from the dermal glands of amphibian have diverse bioactivities that play key roles in the hosts' innate immune system and in causing diverse pharmacological effects in predators that may ingest the defensive skin secretions. As new biotechnological methods have developed, increasing numbers of novel peptides with novel activities have been discovered from this source of natural compounds. In this study, a number of defensive skin secretion peptide sequences were obtained from the European edible frog, P...
August 2016: Protein Journal
https://www.readbyqxmd.com/read/27402448/conformational-change-in-the-active-site-of-streptococcal-unsaturated-glucuronyl-hydrolase-through-site-directed-mutagenesis-at-asp-115
#20
Yusuke Nakamichi, Sayoko Oiki, Bunzo Mikami, Kousaku Murata, Wataru Hashimoto
Bacterial unsaturated glucuronyl hydrolase (UGL) degrades unsaturated disaccharides generated from mammalian extracellular matrices, glycosaminoglycans, by polysaccharide lyases. Two Asp residues, Asp-115 and Asp-175 of Streptococcus agalactiae UGL (SagUGL), are completely conserved in other bacterial UGLs, one of which (Asp-175 of SagUGL) acts as a general acid and base catalyst. The other Asp (Asp-115 of SagUGL) also affects the enzyme activity, although its role in the enzyme reaction has not been well understood...
August 2016: Protein Journal
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