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FEMS Yeast Research

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https://www.readbyqxmd.com/read/28637316/incorporating-comparative-genomics-into-the-design-test-learn-cycle-of-microbial-strain-engineering
#1
Maria Sardi, Audrey P Gasch
Engineering microbes with new properties is an important goal in industrial engineering, to establish biological factories for production of biofuels, commodity chemicals, and pharmaceutics. But engineering microbes to produce new compounds with high yield remains a major challenge toward economically viable production. Incorporating several modern approaches, including synthetic and systems biology, metabolic modeling, and regulatory rewiring have proven to significantly advance industrial strain engineering...
June 16, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28637280/networking-and-collaboration-a-stronghold-of-the-yeast-research-community
#2
John Morrissey
No abstract text is available yet for this article.
June 15, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28637248/expression-and-comparison-of-codon-optimised-aspergillus-tubingensis-amylase-variants-in-saccharomyces-cerevisiae
#3
Rosemary A Cripwell, Shaunita H Rose, Willem H van Zyl
The expression of codon optimised genes is a popular genetic engineering approach for the production of industrially relevant proteins. This study investigates and compares the expression of codon optimised and codon adapted amylase variants. The Aspergillus tubingensis raw starch hydrolysing α-amylase (amyA) and glucoamylase (glaA) encoding genes were redesigned using synonymous codons and expressed in S. cerevisiae Y294. Codon optimisation to favour S. cerevisiae codon bias resulted in a decrease in extracellular enzyme activity of 72% (30...
June 15, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28633406/in-saccharomyces-cerevisiae-gene-targeting-fidelity-depends-on-a-transformation-method-and-proportion-of-the-overall-length-of-the-transforming-and-targeted-dna
#4
Anamarija Štafa, Marina Svetec Miklenic, Antonio Zandona, Bojan Žunar, Neža Cadež, Hrvoje Petkovic, Ivan Krešimir Svetec
Gene replacement is one of the most essential approaches in construction of the genetically modified yeast strains. However, the fidelity of gene targeting and the effort needed for construction of a particular strain can vary significantly. We investigated the influence of two important factors-the choice of the transformation method and the design of the transforming DNA fragment, which can vary in overall length (including flanking regions and selectable marker) compared to the length of the targeted region in the genome...
June 15, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28586408/engineering-tolerance-to-industrially-relevant-stress-factors-in-yeast-cell-factories
#5
Quinten Deparis, Arne Claes, Maria R Foulquié-Moreno, Johan M Thevelein
The main focus in development of yeast cell factories has generally been on establishing optimal activity of heterologous pathways and further metabolic engineering of the host strain to maximize product yield and titer. Adequate stress tolerance of the host strain has turned out to be another major challenge for obtaining economically viable performance in industrial production. Although general robustness is a universal requirement for industrial micro-organisms, production of novel compounds using artificial metabolic pathways presents additional challenges...
June 6, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28582501/what-do-the-pictures-say-snapshots-of-a-career
#6
Terrance G Cooper
What follows are snapshots of my career in chicken eyes, yeast and R. rubrum, castor beans, E. coli, and finally yeast again. In contrast, only a few of the failures that realistically make up a career are included. It is a tale of the generosity and influences of those who shaped what I am and what I learned in a wonderful profession. The science described is only that which I was lucky enough to do or was performed in my laboratory by those who really deserve the credit for any success that I've enjoyed. Not mentioned for lack of space are the critical contributions of many impressive investigators in the field of nitrogen-responsive regulation for no scientific investigation occurs in isolation...
June 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28582498/microorganism-design-for-heterologous-biosynthesis-of-cannabinoids
#7
Carvalho Ângela, Esben Halkjær Hansen, Oliver Kayser, Simon Carlsen, Felix Stehle
During the last decade the use of medical Cannabis has expanded globally and legislation is getting more liberal in many countries, facilitating the research on cannabinoids. The unique interaction of cannabinoids with the human endocannabinoid system make these compounds an interesting target to be studied as a therapeutic agent for the treatment of several medical conditions. However, currently there are important limitations in the study, production and use of cannabinoids as pharmaceutical drugs. Besides the main constituent tetrahydrocannabinolic acid, the structurally related compound cannabidiol is of high interest as drug candidate...
June 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28582494/engineering-of-saccharomyces-cerevisiae-for-the-efficient-co-utilization-of-glucose-and-xylose
#8
Jin Hou, Chenxi Qiu, Yu Shen, Hongxing Li, Xiaoming Bao
The rapid co-fermentation of both glucose and xylose is important for the efficient conversion of lignocellulose biomass into fuels and chemicals. Saccharomyces cerevisiae is considered to be a potential cell factory and has been used to produce various fuels and chemicals, but it cannot metabolize xylose, which has greatly limited the utilization of lignocellulose materials. Therefore, numerous studies have attempted to develop xylose fermenting strains in past decades. The simple introduction of the xylose metabolic pathway does not enable yeast to rapidly utilize xylose, and several limitations still need to be addressed, including glucose repression and slow xylose transport, cofactor imbalance in the xylose reductase/xylitol dehydrogenase pathway, functional expression of a heterologous xylose isomerase, the low efficiency of downstream pathways and low ethanol production...
June 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28582493/new-yeasts-new-brews-modern-approaches-to-brewing-yeast-design-and-development
#9
B Gibson, J-M A Geertman, C T Hittinger, K Krogerus, D Libkind, E J Louis, F Magalhães, J P Sampaio
The brewing industry is experiencing a period of change and experimentation largely driven by customer demand for product diversity. This has coincided with a greater appreciation of the role of yeast in determining the character of beer and the widespread availability of powerful tools for yeast research. Genome analysis in particular has helped clarify the processes leading to domestication of brewing yeast and has identified domestication signatures that may be exploited for further yeast development. The functional properties of non-conventional yeast (both Saccharomyces and non-Saccharomyces) are being assessed with a view to creating beers with new flavours as well as producing flavoursome non-alcoholic beers...
June 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28582489/pathway-engineering-for-the-production-of-heterologous-aromatic-chemicals-and-their-derivatives-in-saccharomyces-cerevisiae-bioconversion-from-glucose
#10
Manuela Gottardi, Mara Reifenrath, Eckhard Boles, Joanna Tripp
Saccharomyces cerevisiae has been extensively engineered for optimizing its performance as a microbial cell factory to produce valuable aromatic compounds and their derivatives as bulk and fine chemicals. The production of heterologous aromatic molecules in yeast is achieved via engineering of the aromatic amino acid biosynthetic pathway. This pathway is connected to two pathways of the central carbon metabolism, and is highly regulated at the gene and protein level. These characteristics impose several challenges for tailoring it, and various modifications need to be applied in order to redirect the carbon flux towards the production of the desired compounds...
June 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28520895/distribution-patterns-of-saccharomyces-species-in-cultural-landscapes-of-germany
#11
Michael Brysch-Herzberg, Martin Seidel
The distribution patterns of the three Saccharomyces species, S. paradoxus, S. uvarum and S. cerevisiae, were investigated by a culture-dependent approach in order to understand better how these species propagate in the cultural landscape of Germany. Saccharomyces paradoxus, the closest relative of S. cerevisiae, is shown to be a true woodland species. It was frequentely found in the soil under conifers indicating that S. paradoxus is an autochthonous member of the microbial community in this habitat. Physiological characteristics of the species like the Crabtree effect and high tolerance against ethanol suggest that the species is adapted to regular supply with considerable amounts of sugars...
May 17, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28520879/phylogenetic-relationship-and-ftir-spectroscopy-derived-lipid-determinants-of-lifespan-parameters-in-the-saccharomyces-cerevisiae-yeast
#12
Mateusz Molon, Jacek Zebrowski
Yeast aging has been gaining much attention in gerontology research, yet the process itself is still not entirely clear. One of the constraints related to the use of the Saccharomyces cerevisiae yeast in studies is the ambiguity of the results concerning aging determinants for different genetic backgrounds. In this paper, we compare reproductive potentials and lifespans of seven widely used haploid laboratory strains differing in daughter cells production capabilities and highlight the importance of choosing an appropriate genotype for the studies on aging...
May 17, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28505256/crispr-cas-system-for-yeast-genome-engineering-advances-and-applications
#13
Vratislav Stovicek, Carina Holkenbrink, Irina Borodina
The methods based on the Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated (Cas) system have quickly gained popularity for genome editing and transcriptional regulation in many organisms, including yeast. This review aims to provide a comprehensive overview of CRISPR application for different yeast species: from basic principles and genetic design to applications.
May 15, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28505306/secretion-of-2-3-dihydroxyisovalerate-as-a-limiting-factor-for-isobutanol-production-in-saccharomyces-cerevisiae
#14
Wesley Cardoso Generoso, Martin Brinek, Heiko Dietz, Mislav Oreb, Eckhard Boles
Isobutanol is a superior biofuel compared to ethanol, and it is naturally produced by yeasts. Previously, Saccharomyces cerevisiae has been genetically engineered to improve isobutanol production. We found that yeast cells engineered for a cytosolic isobutanol biosynthesis secrete large amounts of the intermediate 2,3-dihydroxyisovalerate (DIV). This indicates that the enzyme dihydroxyacid dehydratase (Ilv3) is limiting the isobutanol pathway and/or yeast exhibit effective transport systems for the secretion of the intermediate, competing with isobutanol synthesis...
May 12, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28475763/cell-wall-canals-formed-upon-growth-of-%C3%B0-andida-maltosa-in-the-presence-of-hexadecane-are-associated-with-polyphosphates
#15
Anton N Zvonarev, David E Crowley, Lubov P Ryazanova, Lydia P Lichko, Tatiana G Rusakova, Tatiana V Kulakovskaya, Vladimir V Dmitriev
Canals are supramolecular complexes observed in the cell wall of Candida maltosa grown in the presence of hexadecane as a sole carbon source. Such structures were not observed in glucose grown cells. Microscopic observations of cells stained with diaminobenzidine revealed the presence of oxidative enzymes in the canals. DAPI staining revealed that a substantial part of cellular polyphosphate was present in the cell wall of cells grown on hexadecane in condition of phosphate limitation. The content and chain length of polyphosphates were higher in hexadecane-grown cells than in glucose grown ones...
May 4, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28472279/the-genetic-architecture-in-saccharomyces-cerevisiae-that-contributes-to-variation-in-drug-response-to-the-antifungals-benomyl-and-ketoconazole
#16
Christina A Roberts, John H Miller, Paul H Atkinson
The genetic basis of variation in drug response was investigated in individual Saccharomyces cerevisiae strains that exhibited different susceptibility to two antifungal agents-benomyl and ketoconazole. Following dose-response screening of 25 strains, four were selected on the basis of resistance or sensitivity relative to the standard laboratory strain BY. UWOPS87-2421 and L-1374 were respectively resistant and sensitive to benomyl; DBVPG6044 and Y12 were respectively resistant and sensitive to ketoconazole...
May 2, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28460089/genome-sequence-of-the-highly-weak-acid-tolerant-zygosaccharomyces-bailii-ist302-amenable-to-genetic-manipulations-and-physiological-studies
#17
Margarida Palma, Martin Münsterkötter, João Peça, Ulrich Güldener, Isabel Sá-Correia
Zygosaccharomyces bailii is one of the most problematic spoilage yeast species found in the food and beverage industry particularly in acidic products, due to its exceptional resistance to weak acid stress. This article describes the annotation of the genome sequence of Z. bailii IST302, a strain recently proven to be amenable to genetic manipulations and physiological studies. The work was based on the annotated genomes of strain ISA1307, an interspecies hybrid between Z. bailii and a closely related species, and the Z...
April 29, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28460027/saccharomyces-riding-the-waves-of-technology-and-transition
#18
Terrance G Cooper
No abstract text is available yet for this article.
April 27, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28449102/enhancing-expression-of-ssu1-genes-in-saccharomyces-uvarum-leads-to-an-increase-in-sulfite-tolerance-and-transcriptome-profiles-change
#19
X Z Liu, M Sang, X A Zhang, T K Zhang, H Y Zhang, X He, S X Li, X D Sun, Z M Zhang
Saccharomyces uvarum is a good wine yeast species which may have great potential for the future. However, sulfur tolerance of most S. uvarum strains is very poor. In addition there is still little information about the SSU1 gene of S. uvarum. In order to analyze the function of SSU1 genes, two expression vectors which contained different SSU1 genes were constructed and transferred into a sulfite-tolerant S. uvarum strain A9. Then sulfite tolerance, PCR analysis, sequencing analysis, SO2 output production analysis, RT-qPCR analysis and transcriptome analysis were used to access the function of the S...
April 25, 2017: FEMS Yeast Research
https://www.readbyqxmd.com/read/28419226/sugar-versus-fat-elimination-of-glycogen-storage-improves-lipid-accumulation-in-yarrowia-lipolytica
#20
Govindprasad Bhutada, Martin Kavšcek, Rodrigo Ledesma-Amaro, Stéphane Thomas, Gerald N Rechberger, Jean-Marc Nicaud, Klaus Natter
Triacylglycerol (TAG) and glycogen are the two major metabolites for carbon storage in most eukaryotic organisms. We investigated the glycogen metabolism of the oleaginous Y. lipolytica and found that this yeast accumulates up to 16% glycogen in its biomass. Assuming that elimination of glycogen synthesis would result in an improvement of lipid accumulation, we characterized and deleted the single gene coding for glycogen synthase, YlGSY1. The mutant was grown under lipogenic conditions with glucose and glycerol as substrates and we obtained up to 60% improvement in TAG accumulation compared to the wild type strain...
April 17, 2017: FEMS Yeast Research
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