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Genesis: the Journal of Genetics and Development

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https://www.readbyqxmd.com/read/29330906/generating-retinoic-acid-gradients-by-local-degradation-during-craniofacial-development-one-cell-s-cue-is-another-cell-s-poison
#1
REVIEW
Aditi Dubey, Rebecca E Rose, Drew R Jones, Jean-Pierre Saint-Jeannet
Retinoic acid (RA) is a vital morphogen for early patterning and organogenesis in the developing embryo. RA is a diffusible, lipophilic molecule that signals via nuclear RA receptor heterodimeric units that regulate gene expression by interacting with RA response elements in promoters of a significant number of genes. For precise RA signaling, a robust gradient of the morphogen is required. The developing embryo contains regions that produce RA, and specific intracellular concentrations of RA are created through local degradation mediated by Cyp26 enzymes...
January 13, 2018: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29282851/generation-and-characterization-of-mice-with-mesenchyme-specific-deletion-of-the-entire-eset-histone-methyltransferase-protein
#2
LETTER
Liu Yang, Albert O Gee, Anna Zielinska-Kwiatkowska, Howard A Chansky
ESET protein (also known as SETDB1) catalyzes methylation of histone H3 at lysine 9 (H3-K9). In addition to the full-length transcript, mouse ESET gene also gives rise to alternative spicing variants encoding truncated proteins capable of retaining interaction with other epigenetic enzymes. To completely eliminate full-length ESET and its splicing variants, we have generated a conditional ESET allele with exon 4 flanked by two loxP sites for Cre-mediated DNA deletion and downstream frame-shift mutation of the entire coding region...
December 28, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29280270/cell-ingression-relevance-to-limb-development-and-for-adaptive-evolution
#3
REVIEW
Clarissa C Pasiliao, Sevan Hopyan
Cell ingression is an out-of-plane type of cell intercalation that is essential for the formation of multiple embryonic structures including the limbs. In particular, cell ingression underlies epithelial-to-mesenchymal transition of lateral plate cells to initiate limb bud growth, delamination of neural crest cells to generate peripheral nerve sheaths, and emigration of myoblasts from somites to assemble muscles. Individual cells that ingress undergo apical constriction to generate bottle shaped cells, diminish adhesion to their epithelial cell neighbors, and generate protrusive blebs that likely facilitate their ingression into a subepithelial tissue layer...
December 27, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29243279/the-mito-mkate2-mouse-a-far-red-fluorescent-reporter-mouse-line-for-tracking-mitochondrial-dynamics-in-vivo
#4
Anthony P Barrasso, Xuefei Tong, Ross A Poché
Mitochondria are incredibly dynamic organelles that undergo continuous fission and fusion events to control morphology, which profoundly impacts cell physiology including cell cycle progression (Mitra, 2013; Mitra et al., 2009). This is highlighted by the fact that most major human neurodegenerative diseases are due to specific disruptions in mitochondrial fission or fusion machinery and null alleles of these genes result in embryonic lethality (Chan, 2006; Chen et al., 2017; Flippo and Strack, 2017). To gain a better understanding of the pathophysiology of such disorders, tools for the in vivo assessment of mitochondrial dynamics are required...
December 15, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29193599/characterization-of-mice-carrying-a-conditional-tead1-allele
#5
Tong Wen, Qin Yin, Luyi Yu, Guoqing Hu, Jinhua Liu, Wei Zhang, Liang Huang, Huabo Su, Menghong Wang, Jiliang Zhou
The Hippo-YAP pathway is essential for controlling organ size and tumorigenesis. Previous studies have demonstrated that the primary outcome of YAP signaling in the nucleus is achieved by interaction with the transcription factor TEAD1. The YAP/TEAD1 complex binds to DNA element and regulates the expression of genes involved in cell growth. However, constitutive knockout of TEAD1 leads to early embryonic lethality in mice. Thus, generation of a floxed TEAD1 mouse becomes crucial for further understanding mid- to late-gestation and post-natal role of TEAD1...
November 30, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29115049/generation-and-characterization-of-an-estrogen-receptor-alpha-icre-knock-in-mouse
#6
Chan Jin Park, Guanglin Chen, Yongbum Koo, Po-Ching P Lin, Joseph A Cacioppo, Hailey Prohaska, CheMyong J Ko
Two estrogen receptors, ESR1 and ESR2, are responsible for the classical actions of estrogens in mammalian species. They display different spatiotemporal expression patterns and non-overlapping functions in various tissues and physiological conditions. In this study, a novel knock-in mouse line that expresses codon-improved Cre recombinase (iCre) under regulation of the natural Esr1 promoter (Esr1-iCre) was developed. Functional characterization of iCre expression by crossing them with reporter lines (ROSA26-lacZ or Ai9-RFP) showed that iCre is faithfully expressed in Esr1-lineage cells...
November 8, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29095557/developmental-genetic-and-genomic-insights-into-the-evolutionary-loss-of-limbs-in-snakes
#7
REVIEW
Francisca Leal, Martin J Cohn
The evolution of snakes involved dramatic modifications to the ancestral lizard body plan. Limb loss and elongation of the trunk are hallmarks of snakes, although convergent evolution of limb-reduced and trunk-elongated forms occurred multiple times in snake-like lizards. Advanced snakes are completely limbless, but intermediate and basal snakes have retained rudiments of hindlimbs and pelvic girdles. Moreover, the snake fossil record indicates that complete legs were re-acquired at least once, suggesting that the potential for limb development was retained in some limb-reduced taxa...
November 2, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29095555/timing-the-developmental-origins-of-mammalian-limb-diversity
#8
Karen Sears, Jennifer A Maier, Alexa Sadier, Daniel Sorensen, Daniel J Urban
Mammals have highly diverse limbs that have contributed to their occupation of almost every niche. Researchers have long been investigating the development of these diverse limbs, with the goals of identifying developmental processes and potential biases that shape mammalian limb diversity. To date, researchers have used techniques ranging from the genomic to the anatomic to investigate the developmental processes shaping the limb morphology of mammals from five orders (Marsupialia, Chiroptera, Rodentia, Cetartiodactyla, and Perissodactyla)...
November 2, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29086479/development-of-a-bicistronic-expression-system-in-the-branchiopod-crustacean-daphnia-magna-bicistronic-expression-system-in-daphnia
#9
Hitoshi Kumagai, Tomoaki Matsuura, Yasuhiko Kato, Hajime Watanabe
The viral 2A peptides have recently been used for bicistronic expression in various organisms. In this system, a single mRNA that codes for two proteins flanking the 2A peptide can be translated simultaneously into each protein by ribosomal skipping at this peptide sequence. Here, we tested the function of the Thosea asigna insect virus 2A (T2A) peptide in the branchiopod crustacean Daphnia magna-an emerging model of evolutionary developmental biology. First, we used transgenic Daphnia that expresses a potential bicistronic RNA containing mCherry and histone H2B- green fluorescent protein (GFP) open reading frames upstream and downstream of the T2A sequence, respectively...
October 31, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29086464/znf703-a-novel-target-of-pax3-and-zic1-regulates-hindbrain-and-neural-crest-development-in-xenopus
#10
Chang-Soo Hong, Jean-Pierre Saint-Jeannet
The transcription factors Pax3 and Zic1 are critical to specify the neural plate border and to promote neural crest formation. In a microarray screen designed to identify genes regulated by Pax3 and Zic1 in Xenopus we isolated Znf703/Nlz1 a transcriptional repressor member of the NET (NocA/Nlz, Elbow, and TLP-1) protein family. At early neurula stage znf703 is expressed in the dorsal ectoderm, spanning the neural plate and neural plate border, with an anterior boundary of expression corresponding to rhombomeres 3 and 4 (r3/r4) in the prospective hindbrain...
October 31, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29076617/appendages-and-gene-regulatory-networks-lessons-from-the-limbless
#11
REVIEW
Carlos R Infante, Ashley M Rasys, Douglas B Menke
Among squamate reptiles, dozens of lineages have independently evolved complete or partial limb reduction. This remarkable convergence of limbless and limb-reduced phenotypes provides multiple natural replicates of different ages to explore the evolution and development of the vertebrate limb and the gene regulatory network that controls its formation. The most successful and best known of the limb-reduced squamates are snakes, which evolved a limb-reduced body form more than 100 million years ago. Recent studies have revealed the unexpected finding that many ancient limb enhancers are conserved in the genomes of snakes...
October 27, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29068152/review-and-experimental-evaluation-of-the-embryonic-development-and-evolutionary-history-of-flipper-development-and-hyperphalangy-in-dolphins-cetacea-mammalia
#12
Lisa Noelle Cooper, Karen E Sears, Brooke A Armfield, Bhavneet Kala, Merla Hubler, J G M Thewissen
Cetaceans are the only mammals to have evolved hyperphalangy, an increase in the number of phalanges beyond the mammalian plesiomorphic condition of three phalanges per digit. In this study, cetaceans were used as a novel model to review previous studies of mammalian hyperphalangy and contribute new experimental evidence as to the molecular origins of this phenotype in embryos of the pantropical spotted dolphin (Stenella attenuata). Results show embryos of dolphins, mice, and pigs share similar spatiotemporal patterns of signaling proteins known to shape limbs of mammals (e...
October 25, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29052315/identification-and-evolution-of-latrophilin-receptor-gene-involved-in-tribolium-castaneum-devolopment-and-female-fecundity
#13
Shanshan Gao, Xing Liu, Juanjuan Liu, Wenfeng Xiong, Xiaowen Song, Wei Wu, Luting Wei, Bin Li
Latrophilins (LPHs) are adhesion G-protein-coupled receptors comprising three paralogous forms (LPH-1, LPH-2, and LPH-3) and known receptors for α-latrotoxin, which are involved in growth, development, adaptability, and schizophrenia and other diseases in vertebrates. However, the functions of LPH are poorly understood in most insects. Here, phylogenetic and synteny analysis indicated that LPH-1 and LPH-3 evolved separately from a common ancestor LPH-2. Then, latrophilin (Tclph) was cloned in Tribolium castaneum, and three alternatively spliced transcripts (Tclpha, Tclphb and Tclphc) were identified...
October 20, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/29045046/a-novel-mouse-cre-driver-line-targeting-perilipin-2-expressing-cells-in-the-neonatal-lung
#14
Aglaia Ntokou, Marten Szibor, José Alberto Rodríguez-Castillo, Jennifer Quantius, Susanne Herold, Elie El Agha, Saverio Bellusci, Isabelle Salwig, Thomas Braun, Robert Voswinckel, Werner Seeger, Rory E Morty, Katrin Ahlbrecht
Pulmonary diseases such as chronic obstructive pulmonary disease, lung fibrosis, and bronchopulmonary dysplasia are characterized by the destruction or malformation of the alveolar regions of the lung. The underlying pathomechanisms at play are an area of intense interest since these mechanisms may reveal pathways suitable for interventions to drive reparative processes. Lipid-laden fibroblasts (lipofibroblasts) express the Perilipin 2 (Plin2) gene-product, PLIN2, commonly called adipose-differentiation related protein (ADRP)...
October 16, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28971561/the-drosophila-melanogaster-eip74ef-pa-transcription-factor-directly-binds-the-sciarid-bhc4-1-promoter
#15
LETTER
Henrique Oliveira Frank, Danilo Garcia Sanchez, Lucas de Freitas Oliveira, Jörg Kobarg, Nadia Monesi
The DNA puff BhC4-1 gene of Bradysia hygida (Diptera, Sciaridae) is amplified and expressed in the salivary glands at the end of the last larval instar. Even though there are no BhC4-1 orthologs in Drosophila melanogaster, the mechanisms that regulate BhC4-1 gene expression in B. hygida are for the most part conserved in D. melanogaster. The BhC4-1 promoter contains a 129bp (-186/-58) cis-regulatory module (CRM) that drives developmentally regulated expression in transgenic salivary glands at the onset of metamorphosis...
October 3, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28921880/dwarfism-in-homozygous-agc1-creert-mice-is-associated-with-decreased-expression-of-aggrecan
#16
LETTER
Harunur Rashid, Haiyan Chen, Quamarul Hassan, Amjad Javed
Aggrecan (Acan), a large proteoglycan is abundantly expressed in cartilage tissue. Disruption of Acan gene causes dwarfism and perinatal lethality of homozygous mice. Because of sustained expression of Acan in the growth plate and articular cartilage, Agc(Cre) model has been developed for the regulated ablation of target gene in chondrocytes. In this model, the IRES-CreERT-Neo-pgk transgene is knocked-in the 3'UTR of the Acan gene. We consistently noticed variable weight and size among the Agc(Cre) littermates, prompting us to examine the cause of this phenotype...
October 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28875587/a-new-mouse-line-for-cell-ablation-by-diphtheria-toxin-subunit-a-controlled-by-a-cre-dependent-flex-switch
#17
Nicholas W Plummer, Erica K Ungewitter, Kathleen G Smith, Humphrey H-C Yao, Patricia Jensen
Recombinase responsive mouse lines expressing diphtheria toxin subunit A (DTA) are well established tools for targeted ablation of genetically defined cell populations. Here we describe a new knock-in allele at the Gt(Rosa)26Sor locus that retains the best features of previously described DTA alleles-including a CAG promoter, attenuated mutant DTA cDNA, and ubiquitous EGFP labeling-with the addition of a Cre-dependent FLEx switch for tight control of expression. The FLEx switch consists of two pairs of antiparallel lox sites requiring Cre-mediated recombination for inversion of the DTA to the proper orientation for transcription...
October 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28960679/a-knock-in-mouse-line-conditionally-expressing-the-tumor-suppressor-wtx-amer1
#18
Agnès Boutet, Glenda Comai, Aurélie Charlet, Fariba Jian Motamedi, Haroun Dhib, Roberto Bandiera, Andreas Schedl
WTX/AMER1 is an important developmental regulator, mutations in which have been identified in a proportion of patients suffering from the renal neoplasm Wilms' tumor and in the bone malformation syndrome Osteopathia Striata with Cranial Sclerosis (OSCS). Its cellular functions appear complex and the protein can be found at the membrane, within the cytoplasm and the nucleus. To understand its developmental and cellular function an allelic series for Wtx in the mouse is crucial. Whereas mice carrying a conditional knock out allele for Wtx have been previously reported, a gain-of-function mouse model that would allow studying the molecular, cellular and developmental role of Wtx is still missing...
September 27, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28948682/a-novel-cre-inducible-knock-in-arl13b-trfp-fusion-cilium-reporter
#19
Felizitas Schmitz, Ingo Burtscher, Michael Stauber, Achim Gossler, Heiko Lickert
Cilia play a major role in the regulation of numerous signaling pathways and are essential for embryonic development. Mutations in genes affecting ciliary function can cause a variety of diseases in humans summarized as ciliopathies. To facilitate the detection and visualization of cilia in a temporal and spatial manner in mouse tissues, we generated a Cre-inducible cilium-specific reporter mouse line expressing an ARL13B-tRFP fusion protein driven by a CMV enhancer/chicken β actin promotor (pCAG) from the Hprt locus...
September 25, 2017: Genesis: the Journal of Genetics and Development
https://www.readbyqxmd.com/read/28940692/dpff-1-transcription-factor-deficiency-causes-the-aberrant-activation-of-mpk-1-and-meiotic-defects-in-the-caenorhabditis-elegans-germline
#20
Emmanuel Villanueva-Chimal, Laura S Salinas, Laura P Fernández-Cardenas, Gabriela Huelgas-Morales, Alejandro Cabrera-Wrooman, Rosa E Navarro
The d4 family of transcription factors consists of three members in mammals. DPF1/neuro-d4 is expressed mainly in neurons and the peripheral nervous system, and is important for brain development. DPF2/requiem/ubi-d4 is expressed ubiquitously and presumably functions as an apoptotic factor, especially during the deprivation of trophic factors. DPF3/cer-d4 is expressed in neurons and in the heart, and is important for heart development and function in zebrafish. In Drosophila, there is only one member, dd4, whose function is still unknown, but it is expressed in many tissues and is particularly abundant in the brain of developing embryos and in adults...
September 23, 2017: Genesis: the Journal of Genetics and Development
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