Read by QxMD icon Read

Physical Chemistry Chemical Physics: PCCP

Sohag Biswas, Bhabani S Mallik
We present the characteristic proton transfer process from water to the pyrazole anion, infrared signatures of hydroxyl groups and the free energy profile of the process in aqueous solution combining first principles simulations, wavelet analysis and metadynamics. Our results show that the presence of minimum three water molecules in the gas phase cluster with a particular arrangement is sufficient to facilitate the proton transfer process from water to the anion. The overall reaction is very rapid in aqueous solution, and the free energy barrier for this process is found to be 4...
October 21, 2016: Physical Chemistry Chemical Physics: PCCP
Carlos E Hernandez-Tamargo, Ransel Barzaga, Hans Mikosch, Javier A Martínez, José A Herrera, M H Farías, Mayra P Hernández
The adsorption of sulphur multilayers on Au(100) has been studied using density functional theory (DFT) within the generalized gradient approximation (GGA). The first sulphur layer was adsorbed on the four-fold sites of the unreconstructed Au(100) surface forming a lattice. The experimental parameters of the lattice were reproduced taking into account the surface expansion of the topmost Au(100) layer. This expansion should occur when gold islands are formed after the lifting of hex-reconstruction, which allows the lateral movement of the gold atoms...
October 21, 2016: Physical Chemistry Chemical Physics: PCCP
Sagar Satpathi, Mandar Kulkarni, Arnab Mukherjee, Partha Hazra
Among different polymorphs of DNA, G-quadruplex (GQ) formation in guanine rich sequences has received special attention due to its direct relevance to cellular aging and abnormal cell growths. To date, smaller ions like Na(+), K(+), Li(+), and NH4(+) are the best possible selective GQ stabilizing materials. Herein, we report that an ionic liquid (IL), i.e. guanidinium tris(pentafluoroethyl)trifluorophosphate, can not only instigate the GQ formation in the absence of conventional GQ forming ions (like Na(+), K(+), NH4(+), etc...
October 21, 2016: Physical Chemistry Chemical Physics: PCCP
Woon Yong Sohn, Valérie Brenner, Eric Gloaguen, Michel Mons
Conformer-selective IR gas phase spectroscopy and high level quantum chemistry methods have been used to characterise the diversity of local NH-π interactions between the π ring of a phenylalanine aromatic residue and the nearby main chain amide groups. The study of model systems shows how the amide NH stretch vibrational features, in the 3410-3460 cm(-1) frequency range, can be used to monitor the strength of these local π H-bonds, which is found to depend on both the backbone conformation and the aromatic side chain orientation...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
D P Datta, V Siva, S Varma, D Kanjilal, P K Sahoo
A nanodot array morphology gradually develops on SiO2 surface when a thin bi-layer of Au and Si undergoes ion irradiation. An increasing amount of gold silicide is detected as islands on the insulator surface evolve into nanodots as a function of increasing ion fluence. Different stages of evolution from islands to nanodots are found to be driven by the localized melting of Au along the ion-track and dewetting of the metal film. Dewetting is accompanied by sputter-erosion and mixing of Au and Si at the bi-layer interface due to ion energy deposition...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
Nirod Kumar Sarangi, K G Ayappa, Sandhya S Visweswariah, Jaydeep Kumar Basu
Cell membranes are believed to be highly complex dynamical systems having compositional heterogeneity involving several types of lipids and proteins as the major constituents. This dynamical and compositional heterogeneity is suggested to be critical to the maintenance of active functionality and response to chemical, mechanical, electrical and thermal stresses. However, delineating the various factors responsible for the spatio-temporal response of actual cell membranes to stresses can be quite challenging...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
Rahul Shukla, Deepak Chopra
In this article, the existence of NO noncovalent interactions was explored in per-halo substituted ammonia-water complexes. Optimized geometry at the MP2/aug-cc-pVTZ level shows that the NO distance in all complexes is less than the sum of the vdW radii of N and O. The strength of these contacts was directly dependent on the extent of chlorine substitution on N or O atoms. Also, the level of theory and the basis set employed for the binding energy calculations have a direct effect on the strength of the NO contacts...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
Bart Van den Bogaert, Lore Gheeraert, Mumin Enis Leblebici, Koen Binnemans, Tom Van Gerven
The photochemical recovery of europium from non-aqueous media, more specifically alcohols, is studied. The recovery was performed by photochemical reduction of europium(iii) to europium(ii) and subsequent removal as the insoluble EuCl2. Two charge transfer bands are present in the UV-C region, one originating from the alcohol (around 230 nm) and the other from the chloride anion (at 271 nm), which are responsible for the photochemical reduction when the solution is illuminated by a medium-pressure mercury lamp...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
Zhi-Hao Cui, Feng Wu, Hong Jiang
The relative stability of TiO2 in the rutile and anatase structure is wrongly described by density functional theory in various local, semilocal, or even hybrid functional approximations. In this work, we have found that by considering high-order correlations in the adiabatic connection fluctuation-dissipation theory with the random phase approximation (ACFDT-RPA), rutile is correctly predicted to be more stable than anatase, which can be physically attributed to different characters in the electronic band structure of rutile and anatase, including, in particular, that rutile has a smaller band gap than anatase...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
S Shi, J F Wan, X W Zuo, N L Chen, J H Zhang, Y H Rong
The martensite/parent coherent interface of Mn-based shape memory alloys (SMAs) is a significant part in the research of their martensitic transformation, reversible shape memory effect and magnetic shape memory effect. In the present work, a chemical-structural model was proposed to calculate the martensite/parent coherent interfacial energy of Mn-X (X = Cu, Fe) alloys. In this model, the coherent heterophase interfacial energy consists of chemical and structural parts. Resulting from the formation process of the heterophase interface, the chemical interfacial energy is expressed as the incremental value of bond energy, while the structural part is obtained by calculating the interfacial strain energy...
October 20, 2016: Physical Chemistry Chemical Physics: PCCP
Donghee Chang, Anton Van der Ven
A first-principles study was performed to elucidate the electrochemical properties of CaTi5O11, a recently discovered compound that is a crystallographic variant of TiO2(B) and that shows promise as an anode material for Li-ion batteries. The crystal structure of CaTi5O11 was further refined and two symmetrically distinct interstitial sites that can accommodate Li at positive voltage were identified. A statistical mechanics study relying on density functional theory (DFT) calculations predicted that interstitial Li in CaTi5O11 forms a solid solution with Li insertion resulting in a sloping voltage profile...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Elisabeth Therese Ulrikkeholm, Martin Hangaard Hansen, Jan Rossmeisl, Ib Chorkendorff
Gd modified Pt(111) single crystals have been prepared in an ultra high vacuum (UHV). By vacuum deposition of ∼200 Å Gd on a sample heated to 800 °C, a Pt5Gd alloy terminated by a single atomic layer of Pt was formed. Subsequently the surfaces were characterized using low energy electron diffraction (LEED), showing that a highly ordered crystal structure had appeared. To study the molecular dynamics on this surface a detailed study of the CO adsorption on the surface was conducted using temperature programmed desorption (TPD) of CO...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Mouritz N Svenson, Randall E Youngman, Yuanzheng Yue, Sylwester J Rzoska, Michal Bockowski, Lars R Jensen, Morten M Smedskjaer
The structure and properties of glass can be modified through compression near the glass transition temperature (Tg), and such modified structure and properties can be maintained at ambient temperature and pressure. However, once the compressed glass undergoes annealing near Tg at ambient pressure, the modified structure and properties will relax. The challenging question is how the property relaxation is correlated with both the local and the medium-range structural relaxation. In this paper, we answer this question by studying the volume (density) and structural relaxation of a sodium borate glass that has first been pressure-quenched from its Tg at 1 GPa, and then annealed at ambient pressure under different temperature-time conditions...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Yunxi Yao, Konstantinos P Giapis
For over 90 years, nitroxyl (HNO) has been postulated to be an important reaction intermediate in the catalytic oxidation of ammonia to NO and its by-products (N2, N2O), but never proven to form or exist on catalytic surfaces. Here we show evidence from reactive ion beam experiments that HNO can form directly on the surface of polycrystalline Pt exposed to NH3via Eley-Rideal abstraction reactions of adsorbed NH by energetic O(+) and O2(+) projectiles. The dynamic formation of HNO in a single collision followed up by prompt rebound from the surface prevents subsequent reactive interactions with other surface adsorbates and enables its detection...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Javor K Novev, Richard G Compton
Electrochemical experiments, especially those performed with scanning electrochemical microscopy (SECM), are often carried out without taking special care to thermostat the solution; it is usually assumed that its temperature is homogeneous and equal to the ambient. The present study aims to test this assumption via numerical simulations of the heat transfer in a particular system - the typical measurement cell for SECM. It is assumed that the temperature of the solution is initially homogeneous but different from that of its surroundings; convective heat transfer in the solution and the surrounding air is taken into account within the framework of the Boussinesq approximation...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
A K Sivadasan, Chirantan Singha, A Bhattacharyya, Sandip Dhara
The observation of interface (IF) phonon modes in the recorded Raman spectra of c-plane oriented [AlN/GaN]20 and [Al0.35Ga0.65N/Al0.55Ga0.45N]20 multi-quantum well (MQW) structures grown via plasma assisted molecular beam epitaxy is reported. The nominal shift in the IF phonon mode of E1 symmetry for [Al0.35Ga0.65N/Al0.55Ga0.45N]20 compared to that of the [AlN/GaN]20 MQW structure is understood on the basis of change in dielectric constants (εm) of the surrounding medium. The presence of buffer layers in [Al0...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Qin Qiao, Ruxi Qi, Guanghong Wei, Xuhui Huang
Amyloid deposits of human islet amyloid polypeptide (hIAPP) are identified in 95% of type II diabetes patients. The oligomers during the early stage of hIAPP aggregation are believed to be more cytotoxic than the mature fibrils. However, the structural details during the initial stage of hIAPP aggregation are still under debate experimentally. To understand its initial nucleation mechanism, we investigate the thermodynamics and kinetics of hIAPP(11-25) dimerization, which is the first manifestation of the interplay between intra- and inter-molecular interactions, via the construction of Markov state models from extensive molecular dynamics simulations...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Saugata Sahu, Sanjay Dutta, G Krishnamoorthy
The anion sensitivity and the deprotonation nature of the nitrogenous analogues of 2-(2'-hydroxyphenyl)benzimidazole (HPBI) are investigated in a polar aprotic medium. It is observed that the substitution of pyridyl nitrogen enhances the anion sensitivity. However, despite the enhanced sensitivity of the nitrogenous analogues the deprotonation of these molecules in the presence of strong anions is less favored as compared to HPBI. This anomalous trend observed for the nitrogenous analogs is discussed and explained using theoretical calculations and experimental findings...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Tao Yin, Hui Li, Lin Su, Shuo Liu, Chunwei Yuan, Degang Fu
Electron transfer kinetics of Shewanella loihica PV-4 at the up-growing TiO2 nanosheet (TiO2-NS) modified carbon paper (CP) electrode was investigated. The effect of TiO2-NSs, which speeds up the interfacial electron transfer of outer membrane c-type cytochromes (OMCs), was revealed for the first time. TiO2-NSs with a polar surface modified hydrophobic CP into super-hydrophilic TiO2-NS/CP. The favorable interaction between PV-4 and TiO2-NSs not only enhanced microbial adhesion, but also altered the redox nature of OMCs...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Ying Wei, Jun Lu, Tong Lu, Feihong Meng, Jia Xu, Li Wang, Yang Li, Liping Wang, Fei Li
Prefibrillar amyloid aggregates of proteins are known as cytotoxic species and a common pathogenic factor for many degenerative diseases. The mechanism underlying the formation and cytotoxicity of prefibrillar aggregates is believed to be independent of the actual nature of the amyloid protein. In this study, we monitored the formation of the peptide oligomers and examined the disruptive effects of the oligomers on liposomes using the human islet amyloid polypeptide fragment hIAPP18-27 as a model peptide. We observed various morphologies of oligomers formed at different aggregation stages that precede the formation of mature amyloid fibrils...
October 19, 2016: Physical Chemistry Chemical Physics: PCCP
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"