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Genetics and Molecular Biology

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https://www.readbyqxmd.com/read/28222204/comparative-transcriptome-and-potential-antiviral-signaling-pathways-analysis-of-the-gills-in-the-red-swamp-crayfish-procambarus-clarkii-infected-with-white-spot-syndrome-virus-wssv
#1
Zhi-Qiang Du, Yan-Hui Jin
Red swamp crayfish is an important model organism for research of the invertebrate innate immunity mechanism. Its excellent disease resistance against bacteria, fungi, and viruses is well-known. However, the antiviral mechanisms of crayfish remain unclear. In this study, we obtained high-quality sequence reads from normal and white spot syndrome virus (WSSV)-challenged crayfish gills. For group normal (GN), 39,390,280 high-quality clean reads were randomly assembled to produce 172,591 contigs; whereas, 34,011,488 high-quality clean reads were randomly assembled to produce 182,176 contigs for group WSSV-challenged (GW)...
February 20, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28222203/defense-related-proteins-involved-in-sugarcane-responses-to-biotic-stress
#2
Thais P Souza, Renata O Dias, Marcio C Silva-Filho
Sugarcane is one of the most important agricultural crops in the world. However, pathogen infection and herbivore attack cause constant losses in yield. Plants respond to pathogen infection by inducing the expression of several protein types, such as glucanases, chitinases, thaumatins, peptidase inhibitors, defensins, catalases and glycoproteins. Proteins induced by pathogenesis are directly or indirectly involved in plant defense, leading to pathogen death or inducing other plant defense responses. Several of these proteins are induced in sugarcane by different pathogens or insects and have antifungal or insecticidal activity...
February 20, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28222202/tsc1-and-tsc2-gene-mutations-and-their-implications-for-treatment-in-tuberous-sclerosis-complex-a-review
#3
Clévia Rosset, Cristina Brinckmann Oliveira Netto, Patricia Ashton-Prolla
Tuberous sclerosis complex is an autosomal dominant disorder characterized by skin manifestations and formation of multiple tumors in different organs, mainly in the central nervous system. Tuberous sclerosis is caused by the mutation of one of two tumor suppressor genes, TSC1 or TSC2. Currently, the development of novel techniques and great advances in high-throughput genetic analysis made mutation screening of the TSC1 and TSC2 genes more widely available. Extensive studies of the TSC1 and TSC2 genes in patients with TSC worldwide have revealed a wide spectrum of mutations...
February 20, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28222201/linkage-and-mapping-of-quantitative-trait-loci-associated-with-angular-leaf-spot-and-powdery-mildew-resistance-in-common-beans
#4
Denis Bassi, Boris Briñez, Juliana Santa Rosa, Paula Rodrigues Oblessuc, Caléo Panhoca de Almeida, Stella Maris Nucci, Larissa Chariel Domingos da Silva, Alisson Fernando Chiorato, Rosana Pereira Vianello, Luis Eduardo Aranha Camargo, Matthew Wohlgemuth Blair, Luciana Lasry Benchimol-Reis
Angular leaf spot (ALS) and powdery mildew (PWM) are two important fungi diseases causing significant yield losses in common beans. In this study, a new genetic linkage map was constructed using single sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs), in a segregating population derived from the AND 277 x SEA 5 cross, with 105 recombinant inbred lines. Phenotypic evaluations were performed in the greenhouse to identify quantitative trait loci (QTLs) associated with resistance by means of the composite interval mapping analysis...
February 20, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28212457/papillomaviruses-a-systematic-review
#5
Rodrigo Pinheiro Araldi, Suely Muro Reis Assaf, Rodrigo Franco de Carvalho, Márcio Augusto Caldas Rocha de Carvalho, Jacqueline Mazzuchelli de Souza, Roberta Fiusa Magnelli, Diego Grando Módolo, Franco Peppino Roperto, Rita de Cassia Stocco, Willy Beçak
In the last decades, a group of viruses has received great attention due to its relationship with cancer development and its wide distribution throughout the vertebrates: the papillomaviruses. In this article, we aim to review some of the most relevant reports concerning the use of bovines as an experimental model for studies related to papillomaviruses. Moreover, the obtained data contributes to the development of strategies against the clinical consequences of bovine papillomaviruses (BPV) that have led to drastic hazards to the herds...
February 16, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199447/population-structure-and-genetic-diversity-of-the-giant-anteater-myrmecophaga-tridactyla-myrmecophagidae-pilosa-in-brazil
#6
Camila L Clozato, Flávia R Miranda, Paula Lara-Ruiz, Rosane G Collevatti, Fabrício R Santos
The giant anteater (Myrmecophaga tridactyla, Pilosa, Linnaeus 1758) belongs to the mammalian order Pilosa and presents a large distribution along South America, occupying a great variety of habitats. It is listed in the IUCN Red List of threatened species as Vulnerable. Despite threatened, there is a lack of studies regarding its genetic variability. The aim of this study was to examine the genetic diversity and patterns of genetic structure within remaining populations. We analyzed 77 individuals from seven different populations distributed in four biomes across Brazil: Cerrado, Pantanal, Atlantic Forest and Amazon Forest...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199446/translational-control-in-plant-antiviral-immunity
#7
João Paulo B Machado, Iara P Calil, Anésia A Santos, Elizabeth P B Fontes
Due to the limited coding capacity of viral genomes, plant viruses depend extensively on the host cell machinery to support the viral life cycle and, thereby, interact with a large number of host proteins during infection. Within this context, as plant viruses do not harbor translation-required components, they have developed several strategies to subvert the host protein synthesis machinery to produce rapidly and efficiently the viral proteins. As a countermeasure against infection, plants have evolved defense mechanisms that impair viral infections...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199445/plant-arginyltransferases-ates
#8
Tatiana Domitrovic, Anna K Fausto, Tatiane da F Silva, Elisson Romanel, Maite F S Vaslin
Regulation of protein stability and/or degradation of misfolded and damaged proteins are essential cellular processes. A part of this regulation is mediated by the so-called N-end rule proteolytic pathway, which, in concert with the ubiquitin proteasome system (UPS), drives protein degradation depending on the N-terminal amino acid sequence. One important enzyme involved in this process is arginyl-t-RNA transferase, known as ATE. This enzyme acts post-translationally by introducing an arginine residue at the N-terminus of specific protein targets to signal degradation via the UPS...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199444/new-biotechnological-tools-to-accelerate-scab-resistance-trait-transfer-to-apple
#9
Roberta Cusin, Luís Fernando Revers, Felipe Dos Santos Maraschin
Apple is a fruit crop cultivated worldwide. Apple orchards are exposed to a diverse set of environmental and biological factors that affect the productivity and sustainability of the culture. Many of the efforts and costs for apple production rely on reducing the incidence of fungal diseases, and one of the main diseases is apple scab caused by the fungus Venturia inaequalis. The economic impact of scab on apple productivity has guided many breeding programs to search for cultivars resistant to apple scab. Introgression from wild relatives has been successful to some extent, and genetic engineering for resistant cultivars has even been employed...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199443/secondary-structure-of-nrdna-internal-transcribed-spacers-as-a-useful-tool-to-align-highly-divergent-species-in-phylogenetic-studies
#10
Giovanna C Giudicelli, Geraldo Mäder, Gustavo A Silva-Arias, Priscilla M Zamberlan, Sandro L Bonatto, Loreta B Freitas
Recently, it has been suggested that internal transcribed spacer (ITS) sequences are under selective constraints to preserve their secondary structure. Here, we investigate the patterns of the ITS nucleotide and secondary structure conservation across the Passiflora L. genus to evaluate the potential use of secondary structure data as a helpful tool for the alignment in taxonomically complex genera. Considering the frequent use of ITS, this study also presents a perspective on future analyses in other plant groups...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28199442/phylogeographic-history-of-south-american-populations-of-the-silky-anteater-cyclopes-didactylus-pilosa-cyclopedidae
#11
Raphael Teodoro Franciscani Coimbra, Flávia Regina Miranda, Camila Clozato Lara, Marco Antônio Alves Schetino, Fabrício Rodrigues Dos Santos
Cyclopes didactylus, commonly called silky anteater, is the smallest and least studied of the anteaters. It is an arboreal species occurring in rainforests, ranging from southern Mexico to Central and South America, with an apparently disjoint distribution between Amazon and Atlantic rainforests in Brazil. Although seven subspecies are recognized, little is known about its geographical variation. Thus, to evaluate the population dynamics and evolutionary history of the South American silky anteater, we analyzed 1542 bp sequences of the mitochondrial control region (CR), COI and Cyt-b genes of 32 individuals...
February 13, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28170027/snp-discovery-and-characterisation-in-white-rhino-ceratotherium-simum-with-application-to-parentage-assignment
#12
Christiaan Labuschagne, Desiré L Dalton, J Paul Grobler, Antoinette Kotzé
The white rhino is one of the great success stories of modern wildlife conservation, growing from as few as 50-100 animals in the 1880s, to approximately 20,000 white rhinoceros remaining today. However, illegal trade in conservational rhinoceros horns is adding constant pressure on remaining populations. Captive management of ex situ populations of endangered species using molecular methods can contribute to improving the management of the species. Here we compare for the first time the utility of 33 Single Nucleotide Polymorphisms (SNPs) and nine microsatellites (MS) in isolation and in combination for assigning parentage in captive White Rhinoceros...
February 6, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/28170026/high-genetic-diversity-and-connectivity-in-colossoma-macropomum-in-the-amazon-basin-revealed-by-microsatellite-markers
#13
Paola Fazzi-Gomes, Sávio Guerreiro, Glauber David Almeida Palheta, Nuno Filipe Alves Correa de Melo, Sidney Santos, Igor Hamoy
Colossoma macropomum is the second largest scaled fish of the Amazon. It is economically important for commercial fisheries and for aquaculture, but few studies have examined the diversity and genetic structure of natural populations of this species. The aim of this study was to investigate the levels of genetic variability and connectivity that exist between three natural populations of C. macropomum from the Amazon basin. In total, 247 samples were collected from the municipalities of Tefé, Manaus, and Santarém...
February 6, 2017: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27801481/genotoxic-and-mutagenic-effects-of-polluted-surface-water-in-the-midwestern-region-of-brazil-using-animal-and-plant-bioassays
#14
Priscila Leocádia Rosa Dourado, Monyque Palagano da Rocha, Liriana Mara Roveda, Jorge Luiz Raposo, Liliam Sílvia Cândido, Claudia Andréa Lima Cardoso, Maria Aparecida Marin Morales, Kelly Mari Pires de Oliveira, Alexeia Barufatti Grisolia
This study aimed to evaluate DNA damage in animal and plant cells exposed to water from the Água Boa stream (Dourados, Mato Grosso do Sul, Brazil) by using bioassays, and to identify the chemical compounds in the water to determine the water quality in the area. Through the cytotoxicity bioassay with Allium cepa, using micronucleus test, and comet assay, using Astyanax altiparanae fish, the results indicated that biological samples were genetically altered. Micronuclei were observed in erythrocytes of A. altiparanae after exposure to water from locations close to industrial waste discharge...
October 31, 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27768154/investigator-argus-x-12-study-on-the-population-of-northern-croatia
#15
Josip Crnjac, Petar Ozretić, Siniša Merkaš, Martina Ratko, Mateja Lozančić, Marina Korolija, Maja Popović, Gordan Mršić
X chromosome STR typing has emerged recently as a powerful tool, complementary to autosomal STR typing, in solving complex forensic and missing person cases. Investigator® Argus X-12 is a commercial product that allows co-amplification of 12 X chromosomal markers belonging to four linkage groups (LGs). In this study, we analyzed by capillary electrophoresis blood samples from 100 females and 102 males from a population of northern Croatia. Statistical analysis included calculation of allele and haplotype frequencies, as well as forensic parameters...
October 20, 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27768153/sequencing-and-de-novo-assembly-of-the-asian-gypsy-moth-transcriptome-using-the-illumina-platform
#16
Fan Xiaojun, Yang Chun, Liu Jianhong, Zhang Chang, Li Yao
The Asian gypsy moth (Lymantria dispar) is a serious pest of forest and shade trees in many Asian and some European countries. However, there have been few studies of L. dispar genetic information and comprehensive genetic analyses of this species are needed in order to understand its genetic and metabolic sensitivities, such as the molting mechanism during larval development. In this study, high-throughput sequencing technology was used to sequence the transcriptome of the Asian subspecies of the gyspy moth, after which a comprehensive analysis of chitin metabolism was undertaken...
October 20, 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27898126/the-second-of-a-series-of-articles-for-the-60th-anniversary-of-the-brazilian-society-of-genetics
#17
EDITORIAL
Francisco Mauro Salzano, Fabrício Rodrigues Dos Santos, Klaus Hartfelder, Carlos F M Menck
No abstract text is available yet for this article.
October 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27801483/molecular-data-highlight-hybridization-in-squirrel-monkeys-saimiri-cebidae
#18
Jeferson Carneiro, Luis Fernando da Silva Rodrigues-Filho, Horacio Schneider, Iracilda Sampaio
Hybridization has been reported increasingly frequently in recent years, fueling the debate on its role in the evolutionary history of species. Some studies have shown that hybridization is very common in captive New World primates, and hybrid offspring have phenotypes and physiological responses distinct from those of the "pure" parents, due to gene introgression. Here we used the TA15 Alu insertion to investigate hybridization in the genus Saimiri. Our results indicate the hybridization of Saimiri boliviensis peruviensis with S...
October 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27801482/expression-of-myogenes-in-longissimus-dorsi-muscle-during-prenatal-development-in-commercial-and-local-piau-pigs
#19
Evelyze Pinheiro Dos Reis, Débora Martins Paixão, Otávio José Bernardes Brustolini, Fabyano Fonseca E Silva, Walmir Silva, Flávio Marcos Gomes de Araújo, Anna Christina de Matos Salim, Guilherme Oliveira, Simone Eliza Facioni Guimarães
This study used qRT-PCR to examine variation in the expression of 13 myogenes during muscle development in four prenatal periods (21, 40, 70 and 90 days post-insemination) in commercial (the three-way Duroc, Landrace and Large-White cross) and local Piau pig breeds that differ in muscle mass. There was no variation in the expression of the CHD8, EID2B, HIF1AN, IKBKB, RSPO3, SOX7 and SUFU genes at the various prenatal ages or between breeds. The MAP2K1 and RBM24 genes showed similar expression between commercial and Piau pigs but greater expression (p < 0...
October 2016: Genetics and Molecular Biology
https://www.readbyqxmd.com/read/27791217/agmatoploidy-and-symploidy-a-critical-review
#20
Marcelo Guerra
Agmatoploidy is a type of chromosome rearrangement that involves the fragmentation of an entire chromosome complement, generating a diploid with double its original chromosome number. Agmatoploidy and other related karyotype changes, such as symploidy (the opposite change, promoted by chromosome fusion), partial agmatoploidy, polyagmatoploidy, etc., are restricted to species with holokinetic chromosomes and are assumed to play an important role in their karyotype evolution. However, a critical review of the literature shows that examples of chromosome number doubling by agmatoploidy are rare and not clearly demonstrated, while partial agmatoploidy and partial symploidy seem to be the same as ascending and descending disploidy, respectively...
October 2016: Genetics and Molecular Biology
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