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Current Protocols in Toxicology

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https://www.readbyqxmd.com/read/28146282/preparation-of-specific-compartments-of-the-lungs-for-pathologic-and-biochemical-analysis-of-toxicologic-responses
#1
Laura S Van Winkle, Jacklyn S Kelty, Charles G Plopper
This unit focuses on protocols for assessing microenvironment-specific responses in the thoracic lung tissues. Aspects of the entire respiratory system serve as potential targets for candidate toxicants, but each candidate toxicant may impact distinct sites due to differential distribution of either the toxicant or the target cells. Within the conducting airways, the composition of resident cell populations and the metabolic capabilities of the cell populations vary greatly. Thus, studies of this region of the lung require unique, site-selective methods to clearly define the toxic response...
February 1, 2017: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/28146281/flow-cytometry-based-method-to-detect-escherichia-coli-and-shigella-spp-using-16s-rrna-based-probe
#2
Yong Xue, Jon G Wilkes, Ted J Moskal, Anna J Williams, Willie M Cooper, Dan A Buzatu
Detection of microbial contamination in foods before they go on to the market can help prevent the occurrence of foodborne illness outbreaks. Current methods for the detection of Escherichia coli are limited by time-consuming procedures, which include multiple culture incubation steps, and require several days to get results. This unit describes the development of an improved rapid flow-cytometry-based detection method that has greater sensitivity and specificity. This method requires less time-to-results (TTR) and can detect a small number of E...
February 1, 2017: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/28146280/assessment-of-bile-salt-export-pump-bsep-inhibition-in-membrane-vesicles-using-radioactive-and-lc-ms-based-detection-methods
#3
Lisa D Marroquin, Paul D Bonin, Julie Keefer, Thomas Schroeter
The bile salt export pump (BSEP, ABCB11) belongs to the ATP-binding-cassette superfamily of transporters and is predominately found in the liver. BSEP is an efflux transporter that plays a critical role in the secretion of bile salts into the bile. Inhibition of BSEP function by drugs can result in the buildup of bile salts in the liver and eventually leads to cholestasis and drug-induced liver injury (DILI). DILI is a major cause of withdrawal of drugs from the pharmaceutical market and accounts for >50% of acute liver failures...
February 1, 2017: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/28146279/detecting-protein-sulfenylation-in-cells-exposed-to-a-toxicant
#4
Phillip A Wages
Protein sulfenylation is a post-translational modification that is linked to many cell signaling networks and specific protein functions, thus the detection of any sulfenylated protein after a toxicological exposure is of importance. Specifically, the detection of protein sulfenylation can provide multiple levels of mechanistic insight towards understanding the impact of a toxicological exposure. For instance, sulfenylation is caused by only a handful of reactive chemical species. Any altered sulfenylation suggests a change in cellular health, and the elucidation of the specific protein target that undergoes sulfenylation can help ascertain downstream targets and associated adverse outcomes...
February 1, 2017: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/28146278/detection-and-manipulation-of-the-stress-response-protein-metallothionein
#5
Sadikshya Bhandari, Clare Melchiorre, Kristen Dostie, Debby Laukens, Lindsey Devisscher, Ariel Louwrier, Amy Thees, Michael A Lynes
Metallothioneins (MTs) are small molecular weight stress response proteins that play a central role as reservoir of essential divalent heavy metal cations such as zinc and copper, and also can diminish the effects of toxic heavy metals such as mercury and cadmium. Historically, MT has been considered to be an intracellular protein with roles to play in the management of heavy metals, as a regulator of cellular redox potential, and as a buffer of free radicals. Our recent studies have highlighted immunomodulatory role of MT in inflammatory diseases and also in the progression of metastatic cell movement...
February 1, 2017: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27801935/fluorescence-based-microplate-assays-for-in-vitro-assessment-of-mitochondrial-toxicity-metabolic-perturbation-and-cellular-oxygenation
#6
James Hynes, Conn Carey, Yvonne Will
High-throughput in vitro cell metabolism assays are of particular use for identification and delineation of mitochondrial toxicity and related metabolic perturbation. Here, a panel of fluorescence-based metabolism assays are described for measuring oxygen consumption, glycolytic flux, and cellular oxygenation. They can be applied to analysis of both isolated mitochondria and cell models. Sample data are presented illustrating how these protocols can be used to examine drug treatment, the interplay between oxidative and glycolytic ATP generation, and the impact of cell oxygenation on this balance...
November 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27801934/basic-techniques-in-mammalian-cell-tissue-culture
#7
Katy Phelan, Kristin M May
Cultured mammalian cells are used extensively in cell biology studies. It requires a number of special skills in order to be able to preserve the structure, function, behavior, and biology of the cells in culture. This unit describes the basic skills required to maintain and preserve cell cultures: maintaining aseptic technique, preparing media with the appropriate characteristics, passaging, freezing and storage, recovering frozen stocks, and counting viable cells. © 2016 by John Wiley & Sons, Inc.
November 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27479363/methods-for-the-detection-of-autophagy-in-mammalian-cells
#8
Ziyan Zhang, Rajat Singh, Michael Aschner
Macroautophagy (hereafter referred to as autophagy) is a degradation pathway that delivers cytoplasmic materials to lysosomes via double-membraned vesicles designated autophagosomes. Cytoplasmic constituents are sequestered into autophagosomes, which subsequently fuse with lysosomes, where the cargo is degraded. Autophagy is a crucial mechanism involved in many aspects of cell function, including cellular metabolism and energy balance; alterations in autophagy have been linked to various human pathological processes...
August 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26828332/pcr-based-analysis-of-mitochondrial-dna-copy-number-mitochondrial-dna-damage-and-nuclear-dna-damage
#9
Claudia P Gonzalez-Hunt, John P Rooney, Ian T Ryde, Charumathi Anbalagan, Rashmi Joglekar, Joel N Meyer
Because of the role that DNA damage and depletion play in human disease, it is important to develop and improve tools to assess these endpoints. This unit describes PCR-based methods to measure nuclear and mitochondrial DNA damage and copy number. Long amplicon quantitative polymerase chain reaction (LA-QPCR) is used to detect DNA damage by measuring the number of polymerase-inhibiting lesions present based on the amount of PCR amplification; real-time PCR (RT-PCR) is used to calculate genome content. In this unit, we provide step-by-step instructions to perform these assays in Homo sapiens, Mus musculus, Rattus norvegicus, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Oryzias latipes, Fundulus grandis, and Fundulus heteroclitus, and discuss the advantages and disadvantages of these assays...
February 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26828331/evaluation-of-toxicity-in-mouse-bone-marrow-progenitor-cells
#10
REVIEW
Peace C Ezeh, Huan Xu, Shu Chun Wang, Sebastian Medina, Scott W Burchiel
Development of blood cells through hematopoiesis occurs in the bone marrow (BM), and can be adversely impacted by various substances and/or conditions ranging from known therapeutic, intentionally administered xenobiotics to unintentional food additives and exposure to environmental chemicals. The principles underlying the techniques for evaluating toxicity to BM progenitors (erythroid, myeloid, and lymphoid) exploit changes in the normal hematopoietic process, biochemical cell surface and intracellular markers, as well as components of the BM microenvironment...
February 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26828330/associating-changes-in-the-immune-system-with-clinical-diseases-for-interpretation-in-risk-assessment
#11
REVIEW
Jamie C DeWitt, Dori R Germolec, Robert W Luebke, Victor J Johnson
This overview is an update of the unit originally published in 2004. While the basic tenets of immunotoxicity have not changed in the past 10 years, several publications have explored the application of immunotoxicological data to the risk assessment process. Therefore, the goal of this unit is still to highlight relationships between xenobiotic-induced immunosuppression and risk of clinical diseases progression. In immunotoxicology, this may require development of models to equate moderate changes in markers of immune functions to potential changes in incidence or severity of infectious diseases...
February 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26828329/the-use-of-induced-pluripotent-stem-cells-for-the-study-and-treatment-of-liver-diseases
#12
REVIEW
Marc C Hansel, Julio C Davila, Massoud Vosough, Roberto Gramignoli, Kristen J Skvorak, Kenneth Dorko, Fabio Marongiu, William Blake, Stephen C Strom
Liver disease is a major global health concern. Liver cirrhosis is one of the leading causes of death in the world and currently the only therapeutic option for end-stage liver disease (e.g., acute liver failure, cirrhosis, chronic hepatitis, cholestatic diseases, metabolic diseases, and malignant neoplasms) is orthotropic liver transplantation. Transplantation of hepatocytes has been proposed and used as an alternative to whole organ transplant to stabilize and prolong the lives of patients in some clinical cases...
February 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26828328/a-simple-light-stimulation-of-caenorhabditis-elegans
#13
Kun He Lee, Michael Aschner
Response via noxious stimulus can be an important indicator of sensory neuron function and overall health of an organism. If the stimulation is quick and simple, and the animal can be rescued afterwards, such a method not only allows for assays pertaining to changed sensory ability after various treatments, but also increases the reliability of the statistical relationships that are established. This protocol demonstrates a stimulation assay in Caenorhabditis elegans, using blue light from common laboratory equipment: the fluorescent microscope...
February 1, 2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27479365/a-high-throughput-screening-assay-to-identify-kidney-toxic-compounds
#14
Susanne Ramm, Melanie Adler, Vishal S Vaidya
Kidney toxicity due to drugs and chemicals poses a significant health burden for patients and a financial risk for pharmaceutical companies. However, currently no sensitive and high-throughput in vitro method exists for predictive nephrotoxicity assessment. Primary human proximal tubular epithelial cells (HPTECs) possess characteristics of differentiated epithelial cells, making them a desirable model to use in in vitro screening systems. Additionally, heme oxygenase 1 (HO-1) protein expression is upregulated as a protective mechanism during kidney toxicant-induced oxidative stress or inflammation in HPTECs and can therefore be used as a biomarker for nephrotoxicity...
2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27479364/in-vivo-determination-of-mitochondrial-function-using-luciferase-expressing-caenorhabditis-elegans-contribution-of-oxidative-phosphorylation-glycolysis-and-fatty-acid-oxidation-to-toxicant-induced-dysfunction
#15
Anthony L Luz, Cristina Lagido, Matthew D Hirschey, Joel N Meyer
Mitochondria are a target of many drugs and environmental toxicants; however, how toxicant-induced mitochondrial dysfunction contributes to the progression of human disease remains poorly understood. To address this issue, in vivo assays capable of rapidly assessing mitochondrial function need to be developed. Here, using the model organism Caenorhabditis elegans, we describe how to rapidly assess the in vivo role of the electron transport chain, glycolysis, or fatty acid oxidation in energy metabolism following toxicant exposure, using a luciferase-expressing ATP reporter strain...
2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27145112/multielectrode-array-mea-assay-for-profiling-electrophysiological-drug-effects-in-human-stem-cell-derived-cardiomyocytes
#16
Mike Clements
More relevant and reliable preclinical cardiotoxicity tests are required to improve drug safety and reduce the cost of drug development. Human stem cell-derived cardiomyocytes (hSC-CMs) provide a potential model for the development of superior assays for preclinical drug safety screening. One such hSC-CM assay that has shown significant potential for enabling more predictive drug cardiac risk assessment is the MEA assay. The Multi-electrode Array (MEA) assay is an electrophysiology-based technique that uses microelectrodes embedded in the culture surface of each well to measure fluctuations in extracellular field potential (FP) generated from spontaneously beating hSC-CMs...
2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27145111/determination-of-metabolic-viability-and-cell-mass-using-a-tandem-resazurin-sulforhodamine-b-assay
#17
Filomena S G Silva, Irina G Starostina, Vilena V Ivanova, Albert A Rizvanov, Paulo J Oliveira, Susana P Pereira
The identification of rapid, reliable, and highly reproducible biological assays that can be standardized and routinely used in preclinical tests constitutes a promising approach to reducing drug discovery costs and time. This unit details a tandem, rapid, and reliable cell viability method for preliminary screening of chemical compounds. This assay measures metabolic activity and cell mass in the same cell sample using a dual resazurin/sulforhodamine B assay, eliminating the variation associated with cell seeding and excessive manipulations in assays that test different cell samples across plates...
2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/27145110/investigating-the-effects-of-particulate-matter-on-house-dust-mite-and-ovalbumin-allergic-airway-inflammation-in-mice
#18
Alejandro R Castañeda, Kent E Pinkerton
Particulate matter (PM), a component of air pollution, has been shown to enhance allergen-mediated airway hypersensitivity and inflammation. Surprisingly, exposure to PM during the sensitization to allergen is sufficient to produce immunological changes that result in heightened inflammatory effects upon future allergen exposures (challenge) in the absence of PM. This suggests that PM has the ability to modulate the allergic immune response, thereby acting as an adjuvant by enhancing the immunological memory formed during the adaptive immune response; however, the mechanisms through which this occurs remain elusive...
2016: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26523475/use-of-ciliogenesis-to-detect-aneugens-the-role-of-primary-cilia
#19
Kathyayini V Divi, Yvona Ward, Miriam C Poirier, Ofelia A Olivero
Primary cilia arise from the centrosomes of quiescent or post-mitotic cells, and serve as sensory organelles that communicate mechanical and chemical stimuli from the environment to the interior of the cell. Cilium formation may, therefore, become a useful end point signaling exposure to genotoxins or aneugens. Here we have used the aneugen, zidovudine (AZT), an antiretroviral drug that induces DNA replication arrest and centrosomal amplification (>2 centrosomes per quiescent cell), to evaluate cilia formation in retinal epithelial (pigmented) cells...
November 2, 2015: Current Protocols in Toxicology
https://www.readbyqxmd.com/read/26523474/seahorse-xfe-24-extracellular-flux-analyzer-based-analysis-of-cellular-respiration-in-caenorhabditis-elegans
#20
Anthony L Luz, Latasha L Smith, John P Rooney, Joel N Meyer
Mitochondria are critical for their role in ATP production as well as multiple nonenergetic functions, and mitochondrial dysfunction is causal in myriad human diseases. Less well appreciated is the fact that mitochondria integrate environmental and intercellular as well as intracellular signals to modulate function. Because mitochondria function in an organismal milieu, there is need for assays capable of rapidly assessing mitochondrial health in vivo. Here, using the Seahorse XF(e) 24 Extracellular Flux Analyzer and the pharmacological inhibitors dicyclohexylcarbodiimide (DCCD, ATP synthase inhibitor), carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP, mitochondrial uncoupler), and sodium azide (cytochrome c oxidase inhibitor), we describe how to obtain in vivo measurements of the fundamental parameters [basal oxygen consumption rate (OCR), ATP-linked respiration, maximal OCR, spare respiratory capacity, and proton leak] of the mitochondrial respiratory chain in the model organism Caenorhabditis elegans...
November 2, 2015: Current Protocols in Toxicology
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