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Medical Image Analysis

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https://www.readbyqxmd.com/read/29432979/a-novel-multi-atlas-strategy-with-dense-deformation-field-reconstruction-for-abdominal-and-thoracic-multi-organ-segmentation-from-computed-tomography
#1
Bruno Oliveira, Sandro Queirós, Pedro Morais, Helena R Torres, João Gomes-Fonseca, Jaime C Fonseca, João L Vilaça
Anatomical evaluation of multiple abdominal and thoracic organs is generally performed with computed tomography images. Owing to the large field-of-view of these images, automatic segmentation strategies are typically required, facilitating the clinical evaluation. Multi-atlas segmentation (MAS) strategies have been widely used with this process, requiring multiple alignments between the target image and the set of known datasets, and subsequently fusing the alignment results to obtain the final segmentation...
February 2, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29414436/how-does-the-femoral-cortex-depend-on-bone-shape-a-methodology-for-the-joint-analysis-of-surface-texture-and-shape
#2
A H Gee, G M Treece, K E S Poole
In humans, there is clear evidence of an association between hip fracture risk and femoral neck bone mineral density, and some evidence of an association between fracture risk and the shape of the proximal femur. Here, we investigate whether the femoral cortex plays a role in these associations: do particular morphologies predispose to weaker cortices? To answer this question, we used cortical bone mapping to measure the distribution of cortical mass surface density (CMSD, mg/cm2) in a cohort of 125 females...
February 2, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29427897/spatial-aggregation-of-holistically-nested-convolutional-neural-networks-for-automated-pancreas-localization-and-segmentation
#3
Holger R Roth, Le Lu, Nathan Lay, Adam P Harrison, Amal Farag, Andrew Sohn, Ronald M Summers
Accurate and automatic organ segmentation from 3D radiological scans is an important yet challenging problem for medical image analysis. Specifically, as a small, soft, and flexible abdominal organ, the pancreas demonstrates very high inter-patient anatomical variability in both its shape and volume. This inhibits traditional automated segmentation methods from achieving high accuracies, especially compared to the performance obtained for other organs, such as the liver, heart or kidneys. To fill this gap, we present an automated system from 3D computed tomography (CT) volumes that is based on a two-stage cascaded approach-pancreas localization and pancreas segmentation...
February 1, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29414438/universal-ventricular-coordinates-a-generic-framework-for-describing-position-within-the-heart-and-transferring-data
#4
Jason Bayer, Anton J Prassl, Ali Pashaei, Juan F Gomez, Antonio Frontera, Aurel Neic, Gernot Plank, Edward J Vigmond
Being able to map a particular set of cardiac ventricles to a generic topologically equivalent representation has many applications, including facilitating comparison of different hearts, as well as mapping quantities and structures of interest between them. In this paper we describe Universal Ventricular Coordinates (UVC), which can be used to describe position within any biventricular heart. UVC comprise four unique coordinates that we have chosen to be intuitive, well defined, and relevant for physiological descriptions...
February 1, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29414435/3d-multi-scale-fcn-with-random-modality-voxel-dropout-learning-for-intervertebral-disc-localization-and-segmentation-from-multi-modality-mr-images
#5
Xiaomeng Li, Qi Dou, Hao Chen, Chi-Wing Fu, Xiaojuan Qi, Daniel L Belavý, Gabriele Armbrecht, Dieter Felsenberg, Guoyan Zheng, Pheng-Ann Heng
Intervertebral discs (IVDs) are small joints that lie between adjacent vertebrae. The localization and segmentation of IVDs are important for spine disease diagnosis and measurement quantification. However, manual annotation is time-consuming and error-prone with limited reproducibility, particularly for volumetric data. In this work, our goal is to develop an automatic and accurate method based on fully convolutional networks (FCN) for the localization and segmentation of IVDs from multi-modality 3D MR data...
February 1, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29455111/deepmitosis-mitosis-detection-via-deep-detection-verification-and-segmentation-networks
#6
Chao Li, Xinggang Wang, Wenyu Liu, Longin Jan Latecki
Mitotic count is a critical predictor of tumor aggressiveness in the breast cancer diagnosis. Nowadays mitosis counting is mainly performed by pathologists manually, which is extremely arduous and time-consuming. In this paper, we propose an accurate method for detecting the mitotic cells from histopathological slides using a novel multi-stage deep learning framework. Our method consists of a deep segmentation network for generating mitosis region when only a weak label is given (i.e., only the centroid pixel of mitosis is annotated), an elaborately designed deep detection network for localizing mitosis by using contextual region information, and a deep verification network for improving detection accuracy by removing false positives...
January 31, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29414437/conversion-and-time-to-conversion-predictions-of-mild-cognitive-impairment-using-low-rank-affinity-pursuit-denoising-and-matrix-completion
#7
Kim-Han Thung, Pew-Thian Yap, Ehsan Adeli, Seong-Whan Lee, Dinggang Shen
In this paper, we aim to predict conversion and time-to-conversion of mild cognitive impairment (MCI) patients using multi-modal neuroimaging data and clinical data, via cross-sectional and longitudinal studies. However, such data are often heterogeneous, high-dimensional, noisy, and incomplete. We thus propose a framework that includes sparse feature selection, low-rank affinity pursuit denoising (LRAD), and low-rank matrix completion (LRMC) in this study. Specifically, we first use sparse linear regressions to remove unrelated features...
January 31, 2018: Medical Image Analysis
https://www.readbyqxmd.com/read/29324241/low-dimensional-representation-of-cardiac-motion-using-barycentric-subspaces-a-new-group-wise-paradigm-for-estimation-analysis-and-reconstruction
#8
Marc-Michel Rohé, Maxime Sermesant, Xavier Pennec
One major challenge when trying to build low-dimensional representation of the cardiac motion is its natural circular pattern during a cycle, therefore making the mean image a poor descriptor of the whole sequence. Therefore, traditional approaches for the analysis of the cardiac deformation use one specific frame of the sequence - the end-diastolic (ED) frame - as a reference to study the whole motion. Consequently, this methodology is biased by this empirical choice. Moreover, the ED image might be a poor reference when looking at large deformation for example at the end-systolic (ES) frame...
December 23, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29329053/long-term-safety-area-tracking-lt-sat-with-online-failure-detection-and-recovery-for-robotic-minimally-invasive-surgery
#9
Veronica Penza, Xiaofei Du, Danail Stoyanov, Antonello Forgione, Leonardo S Mattos, Elena De Momi
Despite the benefits introduced by robotic systems in abdominal Minimally Invasive Surgery (MIS), major complications can still affect the outcome of the procedure, such as intra-operative bleeding. One of the causes is attributed to accidental damages to arteries or veins by the surgical tools, and some of the possible risk factors are related to the lack of sub-surface visibilty. Assistive tools guiding the surgical gestures to prevent these kind of injuries would represent a relevant step towards safer clinical procedures...
December 22, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29414434/fast-elastic-registration-of-soft-tissues-under-large-deformations
#10
Igor Peterlík, Hadrien Courtecuisse, Robert Rohling, Purang Abolmaesumi, Christopher Nguan, Stéphane Cotin, Septimiu Salcudean
A fast and accurate fusion of intra-operative images with a pre-operative data is a key component of computer-aided interventions which aim at improving the outcomes of the intervention while reducing the patient's discomfort. In this paper, we focus on the problematic of the intra-operative navigation during abdominal surgery, which requires an accurate registration of tissues undergoing large deformations. Such a scenario occurs in the case of partial hepatectomy: to facilitate the access to the pathology, e...
December 20, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29289703/enhancing-interpretability-of-automatically-extracted-machine-learning-features-application-to-a-rbm-random-forest-system-on-brain-lesion-segmentation
#11
Sérgio Pereira, Raphael Meier, Richard McKinley, Roland Wiest, Victor Alves, Carlos A Silva, Mauricio Reyes
Machine learning systems are achieving better performances at the cost of becoming increasingly complex. However, because of that, they become less interpretable, which may cause some distrust by the end-user of the system. This is especially important as these systems are pervasively being introduced to critical domains, such as the medical field. Representation Learning techniques are general methods for automatic feature computation. Nevertheless, these techniques are regarded as uninterpretable "black boxes"...
December 20, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29268169/the-first-miccai-challenge-on-pet-tumor-segmentation
#12
Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, Laquan Li, Wei Lu, Vincent Jaouen, Clovis Tauber, Jakub Czakon, Filip Drapejkowski, Witold Dyrka, Sorina Camarasu-Pop, Frédéric Cervenansky, Pascal Girard, Tristan Glatard, Michael Kain, Yao Yao, Christian Barillot, Assen Kirov, Dimitris Visvikis
INTRODUCTION: Automatic functional volume segmentation in PET images is a challenge that has been addressed using a large array of methods. A major limitation for the field has been the lack of a benchmark dataset that would allow direct comparison of the results in the various publications. In the present work, we describe a comparison of recent methods on a large dataset following recommendations by the American Association of Physicists in Medicine (AAPM) task group (TG) 211, which was carried out within a MICCAI (Medical Image Computing and Computer Assisted Intervention) challenge...
December 9, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29247876/robust-mr-elastography-stiffness-quantification-using-a-localized-divergence-free-finite-element-reconstruction
#13
Daniel Fovargue, Sebastian Kozerke, Ralph Sinkus, David Nordsletten
As disease often alters structural and functional properties in tissue, the noninvasive measurement of material stiffness in vivo is desirable. Magnetic resonance elastography provides an approach to in vivo tissue characterization, using images of wave motion in tissue and biomechanical principles to reconstruct and quantify stiffness. Successful clinical translation of this technology requires stiffness reconstruction algorithms that are robust, easy to manage, and fast. In this paper, a reconstruction method is presented which addresses these issues by using a local compact divergence-free reconstruction kernel coupled with non-physical constraint elimination and inverse residual weighting to reliably reconstruct stiffness...
December 8, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29247875/autocalibration-method-for-non-stationary-ct-bias-correction
#14
Gonzalo Vegas-Sánchez-Ferrero, Maria J Ledesma-Carbayo, George R Washko, Raúl San José Estépar
Computed tomography (CT) is a widely used imaging modality for screening and diagnosis. However, the deleterious effects of radiation exposure inherent in CT imaging require the development of image reconstruction methods which can reduce exposure levels. The development of iterative reconstruction techniques is now enabling the acquisition of low-dose CT images whose quality is comparable to that of CT images acquired with much higher radiation dosages. However, the characterization and calibration of the CT signal due to changes in dosage and reconstruction approaches is crucial to provide clinically relevant data...
December 8, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29288983/automatic-spinal-cord-localization-robust-to-mri-contrasts-using-global-curve-optimization
#15
Charley Gros, Benjamin De Leener, Sara M Dupont, Allan R Martin, Michael G Fehlings, Rohit Bakshi, Subhash Tummala, Vincent Auclair, Donald G McLaren, Virginie Callot, Julien Cohen-Adad, Michaël Sdika
During the last two decades, MRI has been increasingly used for providing valuable quantitative information about spinal cord morphometry, such as quantification of the spinal cord atrophy in various diseases. However, despite the significant improvement of MR sequences adapted to the spinal cord, automatic image processing tools for spinal cord MRI data are not yet as developed as for the brain. There is nonetheless great interest in fully automatic and fast processing methods to be able to propose quantitative analysis pipelines on large datasets without user bias...
December 6, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29248842/group-wise-similarity-registration-of-point-sets-using-student-s-t-mixture-model-for-statistical-shape-models
#16
Nishant Ravikumar, Ali Gooya, Serkan Çimen, Alejandro F Frangi, Zeike A Taylor
A probabilistic group-wise similarity registration technique based on Student's t-mixture model (TMM) and a multi-resolution extension of the same (mr-TMM) are proposed in this study, to robustly align shapes and establish valid correspondences, for the purpose of training statistical shape models (SSMs). Shape analysis across large cohorts requires automatic generation of the requisite training sets. Automated segmentation and landmarking of medical images often result in shapes with varying proportions of outliers and consequently require a robust method of alignment and correspondence estimation...
December 5, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29232649/multi-hypothesis-tracking-of-the-tongue-surface-in-ultrasound-video-recordings-of-normal-and-impaired-speech
#17
Catherine Laporte, Lucie Ménard
Characterizing tongue shape and motion, as they appear in real-time ultrasound (US) images, is of interest to the study of healthy and impaired speech production. Quantitative anlaysis of tongue shape and motion requires that the tongue surface be extracted in each frame of US speech recordings. While the literature proposes several automated methods for this purpose, these either require large or very well matched training sets, or lack robustness in the presence of rapid tongue motion. This paper presents a new robust method for tongue tracking in US images that combines simple tongue shape and motion models derived from a small training data set with a highly flexible active contour (snake) representation and maintains multiple possible hypotheses as to the correct tongue contour via a particle filtering algorithm...
December 5, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29197705/a-real-time-and-registration-free-framework-for-dynamic-shape-instantiation
#18
Xiao-Yun Zhou, Guang-Zhong Yang, Su-Lin Lee
Real-time 3D navigation during minimally invasive procedures is an essential yet challenging task, especially when considerable tissue motion is involved. To balance image acquisition speed and resolution, only 2D images or low-resolution 3D volumes can be used clinically. In this paper, a real-time and registration-free framework for dynamic shape instantiation, generalizable to multiple anatomical applications, is proposed to instantiate high-resolution 3D shapes of an organ from a single 2D image intra-operatively...
November 30, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29277075/gaze-gesture-based-human-robot-interaction-for-laparoscopic-surgery
#19
Kenko Fujii, Gauthier Gras, Antonino Salerno, Guang-Zhong Yang
While minimally invasive surgery offers great benefits in terms of reduced patient trauma, bleeding, as well as faster recovery time, it still presents surgeons with major ergonomic challenges. Laparoscopic surgery requires the surgeon to bimanually control surgical instruments during the operation. A dedicated assistant is thus required to manoeuvre the camera, which is often difficult to synchronise with the surgeon's movements. This article introduces a robotic system in which a rigid endoscope held by a robotic arm is controlled via the surgeon's eye movement, thus forgoing the need for a camera assistant...
November 28, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/29247877/learning-non-linear-patch-embeddings-with-neural-networks-for-label-fusion
#20
Gerard Sanroma, Oualid M Benkarim, Gemma Piella, Oscar Camara, Guorong Wu, Dinggang Shen, Juan D Gispert, José Luis Molinuevo, Miguel A González Ballester
In brain structural segmentation, multi-atlas strategies are increasingly being used over single-atlas strategies because of their ability to fit a wider anatomical variability. Patch-based label fusion (PBLF) is a type of such multi-atlas approaches that labels each target point as a weighted combination of neighboring atlas labels, where atlas points with higher local similarity to the target contribute more strongly to label fusion. PBLF can be potentially improved by increasing the discriminative capabilities of the local image similarity measurements...
February 2018: Medical Image Analysis
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