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Journal of Industrial Microbiology & Biotechnology

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https://www.readbyqxmd.com/read/28197796/bacterial-community-shift-for-monitoring-the-co-composting-of-oil-palm-empty-fruit-bunch-and-palm-oil-mill-effluent-anaerobic-sludge
#1
Mohd Huzairi Mohd Zainudin, Norhayati Ramli, Mohd Ali Hassan, Yoshihito Shirai, Kosuke Tashiro, Kenji Sakai, Yukihiro Tashiro
A recently developed rapid co-composting of oil palm empty fruit bunch (OPEFB) and palm oil mill effluent (POME) anaerobic sludge is beginning to attract attention from the palm oil industry in managing the disposal of these wastes. However, a deeper understanding of microbial diversity is required for the sustainable practice of the co-compositing process. In this study, an in-depth assessment of bacterial community succession at different stages of the pilot scale co-composting of OPEFB-POME anaerobic sludge was performed using 454-pyrosequencing, which was then correlated with the changes of physicochemical properties including temperature, oxygen level and moisture content...
February 14, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28190109/potential-of-wheat-bran-to-promote-indigenous-microbial-enhanced-oil-recovery
#2
Yali Zhan, Qinghong Wang, Chunmao Chen, Jung Bong Kim, Hongdan Zhang, Brandon A Yoza, Qing X Li
Microbial enhanced oil recovery (MEOR) is an emerging oil extraction technology that utilizes microorganisms to facilitate recovery of crude oil in depleted petroleum reservoirs. In the present study, effects of wheat bran utilization were investigated on stimulation of indigenous MEOR. Biostimulation conditions were optimized with the response surface methodology. The co-application of wheat bran with KNO3 and NH4H2PO4 significantly promoted indigenous MEOR (IMEOR) and exhibited sequential aerobic (O-), facultative (An-) and anaerobic (A0-) metabolic stages...
February 11, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28188449/xylitol-production-by-genetically-modified-industrial-strain-of-saccharomyces-cerevisiae-using-glycerol-as-co-substrate
#3
Anushree B Kogje, Anand Ghosalkar
Xylitol is commercially used in chewing gum and dental care products as a low calorie sweetener having medicinal properties. Industrial yeast strain of S. cerevisiae was genetically modified to overexpress an endogenous aldose reductase gene GRE3 and a xylose transporter gene SUT1 for the production of xylitol. The recombinant strain (XP-RTK) carried the expression cassettes of both the genes and the G418 resistance marker cassette KanMX integrated into the genome of S. cerevisiae. Short segments from the 5' and 3' delta regions of the Ty1 retrotransposons were used as homology regions for integration of the cassettes...
February 10, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28185100/effects-of-acetoacetyl-coa-synthase-expression-on-production-of-farnesene-in-saccharomyces-cerevisiae
#4
Stefan Tippmann, Raphael Ferreira, Verena Siewers, Jens Nielsen, Yun Chen
Efficient production of sesquiterpenes in Saccharomyces cerevisiae requires a high flux through the mevalonate pathway. To achieve this, the supply of acetyl-CoA plays a crucial role, partially because nine moles of acetyl-CoA are necessary to produce one mole of farnesyl diphosphate, but also to overcome the thermodynamic constraint imposed on the first reaction, in which acetoacetyl-CoA is produced from two moles of acetyl-CoA by acetoacetyl-CoA thiolase. Recently, a novel acetoacetyl-CoA synthase (nphT7) has been identified from Streptomyces sp...
February 9, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28185099/microbial-arsenite-oxidation-with-oxygen-nitrate-or-an-electrode-as-the-sole-electron-acceptor
#5
Van Khanh Nguyen, Huong T Tran, Younghyun Park, Jaecheul Yu, Taeho Lee
The purpose of this study was to identify bacteria that can perform As(III) oxidation for environmental bioremediation. Two bacterial strains, named JHS3 and JHW3, which can autotrophically oxidize As(III)-As(V) with oxygen as an electron acceptor, were isolated from soil and water samples collected in the vicinity of an arsenic-contaminated site. According to 16S ribosomal RNA sequence analysis, both strains belong to the ɤ-Proteobacteria class and share 99% sequence identity with previously described strains...
February 9, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28185098/advancement-in-bioprocess-technology-parallels-between-microbial-natural-products-and-cell-culture-biologics
#6
REVIEW
Arpan A Bandyopadhyay, Anurag Khetan, Li-Hong Malmberg, Weichang Zhou, Wei-Shou Hu
The emergence of natural products and industrial microbiology nearly eight decades ago propelled an era of bioprocess innovation. Half a century later, recombinant protein technology spurred the tremendous growth of biologics and added mammalian cells to the forefront of industrial producing cells in terms of the value of products generated. This review highlights the process technology of natural products and protein biologics. Despite the separation in time, there is a remarkable similarity in their progression...
February 9, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28181082/growth-and-expression-of-relevant-metabolic-genes-of-clostridium-thermocellum-cultured-on-lignocellulosic-residues
#7
Vanessa O Leitão, Eliane F Noronha, Brenda R Camargo, Pedro R V Hamann, Andrei S Steindorff, Betania F Quirino, Marcelo Valle de Sousa, Cirano J Ulhoa, Carlos R Felix
The plant cell wall is a source of fermentable sugars in second-generation bioethanol production. However, cellulosic biomass hydrolysis remains an obstacle to bioethanol production in an efficient and low-cost process. Clostridium thermocellum has been studied as a model organism able to produce enzymatic blends that efficiently degrade lignocellulosic biomass, and also as a fermentative microorganism in a consolidated process for the conversion of lignocellulose to bioethanol. In this study, a C. thermocellum strain (designated B8) isolated from goat rumen was characterized for its ability to grow on sugarcane straw and cotton waste, and to produce cellulosomes...
February 8, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28181081/genetic-improvement-of-xylose-metabolism-by-enhancing-the-expression-of-pentose-phosphate-pathway-genes-in-saccharomyces-cerevisiae-ir-2-for-high-temperature-ethanol-production
#8
Yosuke Kobayashi, Takehiko Sahara, Toshihiro Suzuki, Saori Kamachi, Akinori Matsushika, Tamotsu Hoshino, Satoru Ohgiya, Yoichi Kamagata, Kazuhiro E Fujimori
The pentose phosphate pathway (PPP) plays an important role in the efficiency of xylose fermentation during cellulosic ethanol production. In simultaneous saccharification and co-fermentation (SSCF), the optimal temperature for cellulase hydrolysis of lignocellulose is much higher than that of fermentation. Successful use of SSCF requires optimization of the expression of PPP genes at elevated temperatures. This study examined the combinatorial expression of PPP genes at high temperature. The results revealed that over-expression of TAL1 and TKL1 in Saccharomyces cerevisiae (S...
February 8, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28181080/madurastatin-b3-a-rare-aziridine-derivative-from-actinomycete-nocardiopsis-sp-ls150010-with-potent-anti-tuberculosis-activity
#9
Xinjun Zhang, Hongtao He, Rong Ma, Zengchun Ji, Qi Wei, Huanqin Dai, Lixin Zhang, Fuhang Song
Since the discovery of the first antibiotic, natural products have played an important role in chemistry, biology and medicine. To explore the potential of bioactive compounds from microbes isolated from the southeast of Tibet, China, a crude extract library was constructed and screened against Staphylococcus aureus. The strain Nocardiopsis sp. LS150010 was scaled up and subjected to further chemical studies, resulting in the identification of N-salicyloyl-2-aminopropan-1,3-diol (2) and its rare aziridine derivative, madurastatin B3 (1)...
February 8, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28176138/regulation-of-saccharomyces-cerevisiae-genetic-engineering-on-the-production-of-acetate-esters-and-higher-alcohols-during-chinese-baijiu-fermentation
#10
Wei Li, Jian-Hui Wang, Cui-Ying Zhang, Hong-Xia Ma, Dong-Guang Xiao
Acetate esters and higher alcohols greatly influence the quality and flavor profiles of Chinese Baijiu (Chinese liquor). Various mutants have been constructed to investigate the interactions of ATF1 overexpression, IAH1 deletion, and BAT2 deletion on the production of acetate esters and higher alcohols. The results showed that the overexpression of ATF1 under the control of the PGK1 promoter with BAT2 and IAH1 double-gene deletion led to a higher production of acetate esters and a lower production of higher alcohols than the overexpression of ATF1 with IAH1 deletion or overexpression of ATF1 with BAT2 deletion...
February 7, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28160205/rapid-screening-of-cellular-stress-responses-in-recombinant-pichia-pastoris-strains-using-metabolite-profiling
#11
Gregory D Tredwell, Rochelle Aw, Bryn Edwards-Jones, David J Leak, Jacob G Bundy
Heterologous protein production in the yeast Pichia pastoris can be limited by biological responses to high expression levels; the unfolded protein response (UPR) is a key determinant of the success of protein production in this organism. Here, we used untargeted NMR metabolic profiling (metabolomics) of a number of different recombinant strains, carried out in a miniaturized format suitable for screening-level experiments. We identified a number of metabolites (from both cell extracts and supernatants) which correlated well with UPR-relevant gene transcripts, and so could be potential biomarkers for future high-throughput screening of large numbers of P...
February 3, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28154948/reduced-production-of-diacetyl-by-overexpressing-bdh2-gene-and-ilv5-gene-in-yeast-of-the-lager-brewers-with-one-ilv2-allelic-gene-deleted
#12
Ting-Ting Shi, Ping Li, Shi-Jia Chen, Ye-Fu Chen, Xue-Wu Guo, Dong-Guang Xiao
Diacetyl causes an unwanted buttery off-flavor in lager beer. The production of diacetyl is reduced by modifying the metabolic pathway of yeast in the beer fermentation process. In this study, BDH2 and ILV5 genes, coding diacetyl reductase and acetohydroxy acid reductoisomerase, respectively, were expressed using a PGK1 promoter in Saccharomyces cerevisiae, which deleted one ILV2 allelic gene. Diacetyl contents and fermentation performances were examined and compared. Results showed that the diacetyl content in beer was remarkably reduced by 16...
February 2, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28120129/improvement-of-the-ammonia-assimilation-for-enhancing-l-arginine-production-of-corynebacterium-crenatum
#13
Jing Guo, Zaiwei Man, Zhiming Rao, Meijuan Xu, Taowei Yang, Xian Zhang, Zhenghong Xu
There are four nitrogen atoms in L-arginine molecule and the nitrogen content is 32.1%. By now, metabolic engineering for L-arginine production strain improvement was focused on carbon flux optimization. In previous work, we obtained an L-arginine-producing Corynebacterium crenatum SDNN403 (ARG) through screening and mutation breeding. In this paper, a strain engineering strategy focusing on nitrogen supply and ammonium assimilation for L-arginine production was performed. Firstly, the effects of nitrogen atom donor (L-glutamate, L-glutamine and L-aspartate) addition on L-arginine production of ARG were studied, and the addition of L-glutamine and L-aspartate was beneficial for L-arginine production...
January 25, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28105534/construction-of-a-novel-lipolytic-fusion-biocatalyst-gdest-lip-for-industrial-application
#14
Renata Gudiukaite, Mikas Sadauskas, Audrius Gegeckas, Vilius Malunavicius, Donaldas Citavicius
The gene encoding esterase (GDEst-95) from Geobacillus sp. 95 was cloned and sequenced. The resulting open reading frame of 1497 nucleotides encoded a protein with calculated molecular weight of 54.7 kDa, which was classified as a carboxylesterase with an identity of 93-97% to carboxylesterases from Geobacillus bacteria. This esterase can be grouped into family VII of bacterial lipolytic enzymes, was active at broad pH (7-12) and temperature (5-85 °C) range and displayed maximum activity toward short acyl chain p-nitrophenyl (p-NP) esters...
January 19, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28101808/construction-of-engineered-saccharomyces-cerevisiae-strain-to-improve-that-whole-cell-biocatalytic-production-of-melibiose-from-raffinose
#15
Yingbiao Zhou, Yueming Zhu, Yan Men, Caixia Dong, Yuanxia Sun, Juankun Zhang
There are excessive by-products in the biocatalysis process of this whole-cell biocatalytic production of melibiose from raffinose with current Saccharomyces cerevisiae strains. To solve this problem, we constructed engineered strains based on a liquor yeast (S. cerevisiae) via gene deletion (mel1 gene), heterologous integration (fsy1 or/and ffzi1 gene from Candida magnoliae), and gene overexpression (gcr1 gene). Functional verification showed that deletion of the mel1 gene led to elimination of the reactions catalyzed by α-galactosidase, as well as elimination of the degradation of melibiose and the formation of galactose by-product...
January 18, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28101807/direct-bioethanol-production-from-wheat-straw-using-xylose-glucose-co-fermentation-by-co-culture-of-two-recombinant-yeasts
#16
Yuanyuan Zhang, Caiyun Wang, Lulu Wang, Ruoxin Yang, Peilei Hou, Junhong Liu
To achieve a cost-effective bioconversion of lignocellulosic materials, a novel xylose/glucose co-fermentation process by co-culture of cellulose-utilizing recombinant Saccharomyces cerevisiae (S. cerevisiae) and xylan-utilizing recombinant Pichia pastoris (P. pastoris) was developed, in which ethanol was produced directly from wheat straw without additional hydrolytic enzymes. Recombinant S. cerevisiae coexpressing three types of cellulase and recombinant P. pastoris coexpressing two types of xylanase were constructed, respectively...
January 18, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28101806/purification-and-characterization-of-glutamate-decarboxylase-from-enterococcus-raffinosus-tccc11660
#17
Chuanyou Chang, Jun Zhang, Shenxi Ma, Lin Wang, Depei Wang, Jian Zhang, Qiang Gao
Glutamate decarboxylase (GAD) is the sole enzyme that synthesizes γ-aminobutyric acid through the irreversible decarboxylation of L-glutamate. In this study, the purification and characterization of an unreported GAD from a novel strain of Enterococcus raffinosus TCCC11660 were investigated. The native GAD from E. raffinosus TCCC11660 was purified 32.3-fold with a recovery rate of 8.3%, using ultrafiltration and ammonium sulfate precipitation, followed by ion-exchange and size-exclusion chromatography. The apparent molecular weight of purified GAD, as determined by SDS-PAGE and size-exclusion chromatography was 55 and 110 kDa, respectively, suggesting that GAD exists as a dimer of identical subunits in solution...
January 18, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28097501/efficient-production-of-free-fatty-acids-from-ionic-liquid-based-acid-or-enzyme-catalyzed-bamboo-hydrolysate
#18
Le Mi, Dandan Qin, Jie Cheng, Dan Wang, Sha Li, Xuetuan Wei
Two engineered Escherichia coli strains, DQ101 (MG1655 fadD (-))/pDQTES and DQ101 (MG1655 fadD (-))/pDQTESZ were constructed to investigate the free fatty acid production using ionic liquid-based acid- or enzyme-catalyzed bamboo hydrolysate as carbon source in this study. The plasmid, pDQTES, carrying an acyl-ACP thioesterase 'TesA of E. coli in pTrc99A was constructed firstly, and then (3R)-hydroxyacyl-ACP dehydratase was ligated after the TesA to give the plasmid pDQTESZ. These two strains exhibited efficient fatty acid production when glucose was used as the sole carbon source, with a final concentration of 2...
January 17, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28093656/measurement-of-crude-cell-extract-glycerol-dehydratase-activity-in-recombinant-escherichia-coli-using-coupled-enzyme-reactions
#19
Mugesh Sankaranarayanan, Eunhee Seol, Yeonhee Kim, Ashish Singh Chauhan, Sunghoon Park
Glycerol dehydratase (GDHt), which converts glycerol to 3-hydroxypropionaldehyde, is essential to the production of 1,3-propanediol (1,3-PDO) or 3-hydroxypropionic acid (3-HP). A reliable GDHt activity assay in crude-cell extract was developed. In the assay, GDHt converted 1,2-propanediol (1,2-PDO) to propionaldehyde, which was further converted to 1-propionic acid by aldehyde dehydrogenase (KGSADH) or to 1-propanol by yeast-alcohol dehydrogenase (yADH), while the NADH concentration change was monitored spectrophotometrically...
January 16, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28078513/determining-the-roles-of-the-three-alcohol-dehydrogenases-adha-adhb-and-adhe-in-thermoanaerobacter-ethanolicus-during-ethanol-formation
#20
Jilai Zhou, Xiongjun Shao, Daniel G Olson, Sean Jean-Loup Murphy, Liang Tian, Lee R Lynd
Thermoanaerobacter ethanolicus is a promising candidate for biofuel production due to the broad range of substrates it can utilize and its high ethanol yield compared to other thermophilic bacteria, such as Clostridium thermocellum. Three alcohol dehydrogenases, AdhA, AdhB and AdhE, play key roles in ethanol formation. To study their physiological roles during ethanol formation, we deleted them separately and in combination. Previously, it has been thought that both AdhB and AdhE were bifunctional alcohol dehydrogenases...
January 11, 2017: Journal of Industrial Microbiology & Biotechnology
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