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NeuroImage

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https://www.readbyqxmd.com/read/28428048/multi-center-machine-learning-in-imaging-psychiatry-a-meta-model-approach
#1
Petr Dluhoš, Daniel Schwarz, Wiepke Cahn, Neeltje van Haren, René Kahn, Filip Španiel, Jiří Horáček, Tomáš Kašpárek, Hugo Schnack
One of the biggest problems in automated diagnosis of psychiatric disorders from medical images is the lack of sufficiently large samples for training. Sample size is especially important in the case of highly heterogeneous disorders such as schizophrenia, where machine learning models built on relatively low numbers of subjects may suffer from poor generalizability. Via multicenter studies and consortium initiatives researchers have tried to solve this problem by combining data sets from multiple sites. The necessary sharing of (raw) data is, however, often hindered by legal and ethical issues...
April 17, 2017: NeuroImage
https://www.readbyqxmd.com/read/28428047/diffusion-mri-of-the-human-brain-at-ultra-high-field-uhf-a-review
#2
Daniel Gallichan
The continued drive towards MRI scanners operating at increasingly higher main magnetic fields is primarily motivated by the maxim that more teslas mean more signal and lead to better images. This promise of increased signal, which cannot easily be achieved in other ways, encourages efforts to overcome the inextricable technical challenges which accompany this endeavor. Unlike for many applications, however, diffusion imaging is not currently able to directly reap these potential signal gains - at the time of writing it seems fair to say that, for matched gradient and RF hardware, the majority of diffusion images acquired at 7T, while comparable in quality to those achievable at 3T, do not demonstrate a clear advantage over what can be obtained at lower field...
April 17, 2017: NeuroImage
https://www.readbyqxmd.com/read/28419852/reliability-of-volumetric-and-surface-based-normalisation-and-smoothing-techniques-for-pet-analysis-of-the-cortex-a-test-retest-analysis-using-11-c-sch-23390
#3
Granville J Matheson, Per Stenkrona, Zsolt Cselényi, Pontus Plavén-Sigray, Christer Halldin, Lars Farde, Simon Cervenka
Parametric voxelwise analysis is a commonly used tool in neuroimaging, as it allows for identification of regions of effects in the absence of a strong a-priori regional hypothesis by comparing each voxel of the brain independently. Due to the inherent imprecision of single voxel measurements, spatial smoothing is performed to increase the signal-to-noise ratio of single-voxel estimates. In addition, smoothing compensates for imprecisions in anatomical registration, and allows for the use of cluster-based statistical thresholding...
April 15, 2017: NeuroImage
https://www.readbyqxmd.com/read/28419851/an-emergent-functional-parcellation-of-the-temporal-cortex
#4
REVIEW
Rebecca L Jackson, Claude J Bajada, Grace E Rice, Lauren L Cloutman, Matthew A Lambon Ralph
The temporal lobe has been associated with various cognitive functions which include memory, auditory cognition and semantics. However, at a higher level of conceptualisation, all of the functions associated with the temporal lobe can be considered as lying along one major axis; from modality-specific to modality-general processing. This paper used a spectral reordering technique on resting-state and task-based functional data to extract the major organisational axis of the temporal lobe in a bottom-up, data-driven fashion...
April 15, 2017: NeuroImage
https://www.readbyqxmd.com/read/28416453/high-resolution-data-analysis-strategies-for-mesoscale-human-functional-mri-at-7-and-9-4-tesla
#5
Valentin G Kemper, Federico De Martino, Thomas C Emmerling, Essa Yacoub, Rainer Goebel
The advent of ultra-high field functional magnetic resonance imaging (fMRI) has greatly facilitated submillimeter resolution acquisitions (voxel volume below (1 mm³)), allowing the investigation of cortical columns and cortical depth dependent (i.e. laminar) structures in the human brain. Advanced data analysis techniques are essential to exploit the information in high resolution functional measures. In this article, we use recent, exemplary 9.4 T human functional and anatomical data to review the advantages and disadvantages of (1) pooling high resolution data across regions of interest for cortical depth profile analysis, (2) pooling across cortical depths for mapping patches of cortex while discarding depth-dependent (i...
April 14, 2017: NeuroImage
https://www.readbyqxmd.com/read/28416452/associated-motivational-salience-impacts-early-sensory-processing-of-human-faces
#6
Wiebke Hammerschmidt, Holger Sennhenn-Reulen, Annekathrin Schacht
Facial expressions of emotion have an undeniable processing advantage over neutral faces, discernible both at behavioral level and in emotion-related modulations of several event-related potentials (ERPs). Recently it was proposed that also inherently neutral stimuli might gain salience through associative learning mechanisms. The present study investigated whether acquired motivational salience leads to processing advantages similar to biologically determined origins of inherent emotional salience by applying an associative learning paradigm to human face processing...
April 14, 2017: NeuroImage
https://www.readbyqxmd.com/read/28416451/diffeomorphic-functional-brain-surface-alignment-functional-demons
#7
Karl-Heinz Nenning, Hesheng Liu, Satrajit Ghosh, Mert Sabuncu, Ernst Schwartz, Georg Langs
Aligning brain structures across individuals is a central prerequisite for comparative neuroimaging studies. Typically, registration approaches assume a strong association between the features used for alignment, such as macro-anatomy, and the variable observed, such as functional activation or connectivity. Here, we propose to use the structure of intrinsic resting state fMRI signal correlation patterns as a basis for alignment of the cortex in functional studies. Rather than assuming the spatial correspondence of functional structures between subjects, we have identified locations with similar connectivity profiles across subjects...
April 14, 2017: NeuroImage
https://www.readbyqxmd.com/read/28416450/denoise-diffusion-weighted-images-using-higher-order-singular-value-decomposition
#8
Xinyuan Zhang, Jie Peng, Man Xu, Wei Yang, Zhe Zhang, Hua Guo, Wufan Chen, Qianjin Feng, Ed X Wu, Yanqiu Feng
Noise usually affects the reliability of quantitative analysis in diffusion-weighted (DW) magnetic resonance imaging (MRI), especially at high b-values and/or high spatial resolution. Higher-order singular value decomposition (HOSVD) has recently emerged as a simple, effective, and adaptive transform to exploit sparseness within multidimensional data. In particular, the patch-based HOSVD denoising has demonstrated superb performance when applied to T1-, T2-, and proton density-weighted MRI data. In this study, we aim to investigate the feasibility of denoising DW data using the HOSVD transform...
April 14, 2017: NeuroImage
https://www.readbyqxmd.com/read/28411154/neural-mechanisms-of-individual-differences-in-temporal-discounting-of-monetary-and-primary-rewards-in-adolescents
#9
Erik de Water, Gabry W Mies, Bernd Figner, Yuliya Yoncheva, Wouter van den Bos, F Xavier Castellanos, Antonius H N Cillessen, Anouk Scheres
Adolescents are generally characterized as impulsive. However, impulsivity is a multi-dimensional construct that involves multiple component processes. Which of these components contribute to adolescent impulsivity is currently unclear. This study focused on the neural mechanisms underlying individual differences in distinct components of temporal discounting (TD), i.e., the preference for smaller immediate rewards over larger delayed rewards. Participants were 58 adolescents (12-16 years-old) who performed an fMRI TD task with both monetary and snack rewards...
April 14, 2017: NeuroImage
https://www.readbyqxmd.com/read/28414186/a-review-on-neuroimaging-based-classification-studies-and-associated-feature-extraction-methods-for-alzheimer-s-disease-and-its-prodromal-stages
#10
REVIEW
Saima Rathore, Mohamad Habes, Muhammad Aksam Iftikhar, Amanda Shacklett, Christos Davatzikos
Neuroimaging has made it possible to measure pathological brain changes associated with Alzheimer's disease (AD) in vivo. Over the past decade, these measures have been increasingly integrated into imaging signatures of AD by means of classification frameworks, offering promising tools for individualized diagnosis and prognosis. We reviewed neuroimaging-based studies for AD classification and mild cognitive impairment, selected after online database searches in Google Scholar and PubMed (January, 1985 to June, 2016)...
April 13, 2017: NeuroImage
https://www.readbyqxmd.com/read/28414185/individual-differences-in-the-dominance-of-interhemispheric-connections-predict-cognitive-ability-beyond-sex-and-brain-size
#11
Kenia Martínez, Joost Janssen, José Ángel Pineda-Pardo, Susanna Carmona, Francisco Javier Román, Yasser Alemán-Gómez, David Garcia-Garcia, Sergio Escorial, María Ángeles Quiroga, Emiliano Santarnecchi, Francisco Javier Navas-Sánchez, Manuel Desco, Celso Arango, Roberto Colom
Global structural brain connectivity has been reported to be sex-dependent with women having increased interhemispheric connectivity (InterHc) and men having greater intrahemispheric connectivity (IntraHc). However, (a) smaller brains show greater InterHc, (b) larger brains show greater IntraHc, and (c) women have, on average, smaller brains than men. Therefore, sex differences in brain size may modulate sex differences in global brain connectivity. At the behavioural level, sex-dependent differences in connectivity are thought to contribute to men-women differences in spatial and verbal abilities...
April 13, 2017: NeuroImage
https://www.readbyqxmd.com/read/28412443/separating-blood-and-water-perfusion-and-free-water-elimination-from-diffusion-mri-in-the-human-brain
#12
Anna S Rydhög, Filip Szczepankiewicz, Ronnie Wirestam, André Ahlgren, Carl-Fredrik Westin, Linda Knutsson, Ofer Pasternak
The assessment of the free water fraction in the brain provides important information about extracellular processes such as atrophy and neuroinflammation in various clinical conditions as well as in normal development and aging. Free water estimates from diffusion MRI are assumed to account for freely diffusing water molecules in the extracellular space, but may be biased by other pools of molecules in rapid random motion, such as the intravoxel incoherent motion (IVIM) of blood, where water molecules perfuse in the randomly oriented capillary network...
April 12, 2017: NeuroImage
https://www.readbyqxmd.com/read/28412442/human-brain-mapping-a-systematic-comparison-of-parcellation-methods-for-the-human-cerebral-cortex
#13
REVIEW
Salim Arslan, Sofia Ira Ktena, Antonios Makropoulos, Emma C Robinson, Daniel Rueckert, Sarah Parisot
The macro-connectome elucidates the pathways through which brain regions are structurally connected or functionally coupled to perform a specific cognitive task. It embodies the notion of representing and understanding all connections within the brain as a network, while the subdivision of the brain into interacting functional units is inherent in its architecture. As a result, the definition of network nodes is one of the most critical steps in connectivity network analysis. Although brain atlases obtained from cytoarchitecture or anatomy have long been used for this task, connectivity-driven methods have arisen only recently, aiming to delineate more homogeneous and functionally coherent regions...
April 12, 2017: NeuroImage
https://www.readbyqxmd.com/read/28412441/noise-robust-cortical-tracking-of-attended-speech-in-real-world-acoustic-scenes
#14
Søren Asp Fuglsang, Torsten Dau, Jens Hjortkjær
Selectively attending to one speaker in a multi-speaker scenario is thought to synchronize low-frequency cortical activity to the attended speech signal. In recent studies, reconstruction of speech from single-trial electroencephalogram (EEG) data has been used to decode which talker a listener is attending to in a two-talker situation. It is currently unclear how this generalizes to more complex sound environments. Behaviorally, speech perception is robust to the acoustic distortions that listeners typically encounter in everyday life, but it is unknown whether this is mirrored by a noise-robust neural tracking of attended speech...
April 12, 2017: NeuroImage
https://www.readbyqxmd.com/read/28412440/transient-networks-of-spatio-temporal-connectivity-map-communication-pathways-in-brain-functional-systems
#15
Alessandra Griffa, Benjamin Ricaud, Kirell Benzi, Xavier Bresson, Alessandro Daducci, Pierre Vandergheynst, Jean-Philippe Thiran, Patric Hagmann
The study of brain dynamics enables us to characterize the time-varying functional connectivity among distinct neural groups. However, current methods suffer from the absence of structural connectivity information. We propose to integrate infra-slow neural oscillations and anatomical-connectivity maps, as derived from functional and diffusion MRI, in a multilayer-graph framework that captures transient networks of spatio-temporal connectivity. These networks group anatomically wired and temporary synchronized brain regions and encode the propagation of functional activity on the structural connectome...
April 12, 2017: NeuroImage
https://www.readbyqxmd.com/read/28412439/musical-literacy-shifts-asymmetries-in-the-ventral-visual-cortex
#16
Florence Bouhali, Valeria Mongelli, Laurent Cohen
The acquisition of literacy has a profound impact on the functional specialization and lateralization of the visual cortex. Due to the overall lateralization of the language network, specialization for printed words develops in the left occipitotemporal cortex, allegedly inducing a secondary shift of visual face processing to the right, in literate as compared to illiterate subjects. Applying the same logic to the acquisition of high-level musical literacy, we predicted that, in musicians as compared to non-musicians, occipitotemporal activations should show a leftward shift for music reading, and an additional rightward push for face perception...
April 12, 2017: NeuroImage
https://www.readbyqxmd.com/read/28411157/the-separate-effects-of-lipids-and-proteins-on-brain-mri-contrast-revealed-through-tissue-clearing
#17
Christoph Leuze, Markus Aswendt, Emily Ferenczi, Corey W Liu, Brian Hsueh, Maged Goubran, Qiyuan Tian, Gary Steinberg, Michael M Zeineh, Karl Deisseroth, Jennifer A McNab
Despite the widespread use of magnetic resonance imaging (MRI) of the brain, the relative contribution of different biological components (e.g. lipids and proteins) to structural MRI contrasts (e.g., T1, T2, T2⁎, proton density, diffusion) remains incompletely understood. This limitation can undermine the interpretation of clinical MRI and hinder the development of new contrast mechanisms. Here, we determine the respective contribution of lipids and proteins to MRI contrast by removing lipids and preserving proteins in mouse brains using CLARITY...
April 11, 2017: NeuroImage
https://www.readbyqxmd.com/read/28411156/a-graded-tractographic-parcellation-of-the-temporal-lobe
#18
Claude J Bajada, Rebecca L Jackson, Hamied A Haroon, Hojjatollah Azadbakht, Geoff J M Parker, Matthew A Lambon Ralph, Lauren L Cloutman
The temporal lobe has been implicated in multiple cognitive domains through lesion studies as well as cognitive neuroimaging research. There has been a recent increased interest in the structural and connective architecture that underlies these functions. However there has not yet been a comprehensive exploration of the patterns of connectivity that appear across the temporal lobe. This article uses a data driven, spectral reordering approach in order to understand the general axes of structural connectivity within the temporal lobe...
April 11, 2017: NeuroImage
https://www.readbyqxmd.com/read/28411155/trial-timing-and-pattern-information-analyses-of-fmri-data
#19
Dagmar Zeithamova, Maria-Alejandra de Araujo Sanchez, Anisha Adke
Pattern-information approaches to fMRI data analysis are becoming increasingly popular but few studies to date have investigated experimental design optimization for these analyses. Here, we tested several designs that varied in the number of trials and trial timing within fixed duration scans while participants encoded images of animals and tools. Trial timing conditions with fixed onset-to-onset timing ranged from slow 12-second trials with two repetitions of each item to quick 6-second trials with four repetitions per item...
April 11, 2017: NeuroImage
https://www.readbyqxmd.com/read/28408290/automated-template-based-brain-localization-and-extraction-for-fetal-brain-mri-reconstruction
#20
Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K Warfield, Meritxell Bach Cuadra, Ali Gholipour
Most fetal brain MRI reconstruction algorithms rely only on brain tissue-relevant voxels of low-resolution (LR) images to enhance the quality of inter-slice motion correction and image reconstruction. Consequently the fetal brain needs to be localized and extracted as a first step, which is usually a laborious and time consuming manual or semi-automatic task. We have proposed in this work to use age-matched template images as prior knowledge to automatize brain localization and extraction. This has been achieved through a novel automatic brain localization and extraction method based on robust template-to-slice block matching and deformable slice-to-template registration...
April 10, 2017: NeuroImage
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