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Plant Molecular Biology

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https://www.readbyqxmd.com/read/28695315/ubiquitin-specific-proteases-function-in-plant-development-and-stress-responses
#1
REVIEW
Huapeng Zhou, Jinfeng Zhao, Jingqing Cai, Suyash B Patil
UBIQUITIN-SPECIFIC PROTEASES play important roles in plant development and stress responses. Protein ubiquitination and deubiquitination are reversible processes, which can modulate the stability, activity as well as subcellular localization of the substrate proteins. UBIQUITIN-SPECIFIC PROTEASE (UBP) protein family participates in protein deubiquitination. Members of UBP family are involved in a variety of physiological processes in plants, as evidenced by their functional characterization in model plant Arabidopsis and other plants...
July 10, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28695314/bacterial-production-and-reconstitution-in-proteoliposomes-of-solanum-lycopersicum-cat2-a-transporter-of-basic-amino-acids-and-organic-cations
#2
Teresa Maria Rosaria Regina, Michele Galluccio, Mariafrancesca Scalise, Lorena Pochini, Cesare Indiveri
The vacuolar SlCAT2 was cloned, over-produced in E. coli and reconstituted in proteoliposomes. Arg, Ornithine and Lys were identified as substrates. Unexpectedly, also the organic cations Tetraethylammonium and Acetylcholine were transported indicating involvement of SlCAT2 in signaling. In land plants several transporters are involved in ion and metabolite flux across membranes of cells or intracellular organelles. The vacuolar amino acid transporter CAT2 from Solanum lycopersicum was investigated in this work...
July 10, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28687904/a-comparative-genomic-and-transcriptomic-analysis-at-the-level-of-isolated-root-hair-cells-reveals-new-conserved-root-hair-regulatory-elements
#3
Zhenzhen Qiao, Lise Pingault, Prince Zogli, Micaela Langevin, Niccole Rech, Andrew Farmer, Marc Libault
A comparative transcriptomic and genomic analysis between Arabidopsis thaliana and Glycine max root hair genes reveals the evolution of the expression of plant genes after speciation and whole genome duplication. Our understanding of the conservation and divergence of the expression patterns of genes between plant species is limited by the quality of the genomic and transcriptomic resources available. Specifically, the transcriptomes generated from plant organs are the reflection of the contribution of the different cell types composing the samples weighted by their relative abundances in the sample...
July 7, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28674938/herbaspirillum-rubrisubalbicans-a-mild-pathogen-impairs-growth-of-rice-by-augmenting-ethylene-levels
#4
Glaucio Valdameri, Dayane Alberton, Vivian Rotuno Moure, Thiago Borba Kokot, Caroline Kukolj, Liziane Cristina Campos Brusamarello-Santos, Rose Adele Monteiro, Fabio de Oliveira Pedrosa, Emanuel Maltempi de Souza
Herbaspirillum rubrisubalbicans decreases growth of rice. Inoculation of rice with H. rubrisubalbicans increased the ACCO mRNA levels and ethylene production. The H. rubrisubalbicans rice interactions were further characterized by proteomic approach. Herbaspirillum rubrisubalbicans is a well-known growth-promoting rhizobacteria that can also act as a mild phyto-pathogen. During colonisation of rice, RT-qPCR analyses showed that H. rubrisubalbicans up-regulates the methionine recycling pathway as well as phyto-siderophore synthesis genes...
July 3, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28647905/time-dependent-leaf-proteome-alterations-of-brachypodium-distachyon-in-response-to-drought-stress
#5
Ozge Tatli, Bahar Sogutmaz Ozdemir, Gizem Dinler Doganay
For the first time, a comprehensive proteome analysis was conducted on Brachypodium leaves under drought stress. Gradual changes in response to drought stress were monitored. Drought is one of the major stress factors that dramatically affect the agricultural productivity worldwide. Improving the yield under drought is an urgent challenge in agriculture. Brachypodium distachyon is a model species for monocot plants such as wheat, barley and several potential biofuel grasses. In the current study, a comprehensive proteome analysis was conducted on Brachypodium leaves under different levels of drought application...
June 24, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28634865/dynamics-of-tobacco-dna-topoisomerases-ii-in-cell-cycle-regulation-to-manage-topological-constrains-during-replication-transcription-and-mitotic-chromosome-condensation-and-segregation
#6
Badri Nath Singh, V Mohan Murali Achary, Varakumar Panditi, Sudhir K Sopory, Malireddy K Reddy
The topoisomerase II expression varies as a function of cell proliferation. Maximal topoisomerase II expression was tightly coupled to S phase and G2/M phase via both transcriptional and post-transcriptional regulation. Investigation in meiosis using pollen mother cells also revealed that it is not the major component of meiotic chromosomes, it seems to diffuse out once meiotic chromosomal condensation is completed. Synchronized tobacco BY-2 cell cultures were used to study the role of topoisomerase II in various stages of the cell cycle...
June 20, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28631168/the-function-of-osbhlh068-is-partially-redundant-with-its-homolog-atbhlh112-in-the-regulation-of-the-salt-stress-response-but-has-opposite-functions-to-control-flowering-in-arabidopsis
#7
Hung-Chi Chen, Vicki Hsieh-Feng, Pei-Chun Liao, Wan-Hsing Cheng, Li-Yu Liu, Yun-Wei Yang, Ming-Hsin Lai, Men-Chi Chang
The homologous genes OsbHLH068 and AtbHLH112 have partially redundant functions in the regulation of the salt stress response but opposite functions to control flowering in Arabidopsis. The transcription factor (TF) basic/Helix-Loop-Helix (bHLH) is important for plant growth, development, and stress responses. OsbHLH068, which is a homologous gene of AtbHLH112 that is up-regulated under drought and salt stresses, as indicated by previous microarray data analysis. However, the intrinsic function of OsbHLH068 remains unknown...
June 19, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28631167/copper-and-ectopic-expression-of-the-arabidopsis-transport-protein-copt1-alter-iron-homeostasis-in-rice-oryza-sativa-l
#8
Amparo Andrés-Bordería, Fernando Andrés, Antoni Garcia-Molina, Ana Perea-García, Concha Domingo, Sergi Puig, Lola Peñarrubia
Copper deficiency and excess differentially affect iron homeostasis in rice and overexpression of the Arabidopsis high-affinity copper transporter COPT1 slightly increases endogenous iron concentration in rice grains. Higher plants have developed sophisticated mechanisms to efficiently acquire and use micronutrients such as copper and iron. However, the molecular mechanisms underlying the interaction between both metals remain poorly understood. In the present work, we study the effects produced on iron homeostasis by a wide range of copper concentrations in the growth media and by altered copper transport in Oryza sativa plants...
June 19, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28608281/suppression-of-cucumber-stachyose-synthase-gene-cssts-inhibits-phloem-loading-and-reduces-low-temperature-stress-tolerance
#9
Jianguo Lü, Xiaolei Sui, Si Ma, Xin Li, Huan Liu, Zhenxian Zhang
Stachyose is the main transporting sugar in phloem of Raffinose family oligosaccharides-transporting species. Stachyose synthase (STS) is a key enzyme for stachyose biosynthesis, but the gene encoding STS is poorly characterized in cucumber (Cucumis sativus L.), which is a model plant for studying stachyose metabolism and phloem function. In this research, stachyose synthase gene (CsSTS) from cucumber was isolated and its physiological functions were analyzed. CsSTS expressed mainly in the phloem of the minor veins in mature leaves and localized to companion cells...
June 12, 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28681139/a-novel-ap2-erf-family-transcription-factor-from-glycine-soja-gserf71-is-a-dna-binding-protein-that-positively-regulates-alkaline-stress-tolerance-in-arabidopsis
#10
Yang Yu, Xiangbo Duan, Xiaodong Ding, Chao Chen, Dan Zhu, Kuide Yin, Lei Cao, Xuewei Song, Pinghui Zhu, Qiang Li, Zaib Un Nisa, Jiyang Yu, Jianying Du, Yu Song, Huiqing Li, Beidong Liu, Yanming Zhu
Here we first found that GsERF71, an ERF factor from wild soybean could increase plant alkaline stress tolerance by up-regulating H+-ATPase and by modifing the accumulation of Auxin. Alkaline soils are widely distributed all over the world and greatly limit plant growth and development. In our previous transcriptome analyses, we have identified several ERF (ethylene-responsive factor) genes that responded strongly to bicarbonate stress in the roots of wild soybean G07256 (Glycine soja). In this study, we cloned and functionally characterized one of the genes, GsERF71...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28639116/integration-of-transcriptomic-and-metabolic-data-reveals-hub-transcription-factors-involved-in-drought-stress-response-in-sunflower-helianthus-annuus-l
#11
Sebastián Moschen, Julio A Di Rienzo, Janet Higgins, Takayuki Tohge, Mutsumi Watanabe, Sergio González, Máximo Rivarola, Francisco García-García, Joaquin Dopazo, H Esteban Hopp, Rainer Hoefgen, Alisdair R Fernie, Norma Paniego, Paula Fernández, Ruth A Heinz
By integration of transcriptional and metabolic profiles we identified pathways and hubs transcription factors regulated during drought conditions in sunflower, useful for applications in molecular and/or biotechnological breeding. Drought is one of the most important environmental stresses that effects crop productivity in many agricultural regions. Sunflower is tolerant to drought conditions but the mechanisms involved in this tolerance remain unclear at the molecular level. The aim of this study was to characterize and integrate transcriptional and metabolic pathways related to drought stress in sunflower plants, by using a system biology approach...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28578496/thdof1-4-and-thzfp1-constitute-a-transcriptional-regulatory-cascade-involved-in-salt-or-osmotic-stress-in-tamarix-hispida
#12
Dandan Zang, Lina Wang, Yiming Zhang, Huimin Zhao, Yucheng Wang
Identification of the upstream regulators of a gene is important to characterize the transcriptional pathway and the function of the gene. Previously, we found that a zinc finger protein (ThZFP1) is involved in abiotic stress tolerance of Tamarix hispida. In the present study, we further investigated the transcriptional pathway of ThZFP1. Dof motifs are abundant in the ThZFP1 promoter; therefore, we used them to screen for transcriptional regulators of ThZFP1. A Dof protein, ThDof1.4, binds to the Dof motif specifically, and was hypothesized as the upstream regulator of ThZFP1...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28551765/mir529a-modulates-panicle-architecture-through-regulating-squamosa-promoter-binding-like-genes-in-rice-oryza-sativa
#13
Erkui Yue, Chao Li, Yu Li, Zhen Liu, Jian-Hong Xu
MiR529a affects rice panicle architecture by targeting OsSPL2,OsSPL14 and OsSPL17 genes that could regulate their downstream panicle related genes. The panicle architecture determines the grain yield and quality of rice, which could be regulated by many transcriptional factors. The SQUAMOSA PROMOTER BINDING-LIKE (SPL) transcription factors are involved in the regulation of panicle development, which are targeted by miR156 and miR529. The expression profile demonstrated that miR529a is preferentially expressed in the early panicle of rice and it might regulate panicle development in rice...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28540497/large-scale-transcriptome-analysis-reveals-arabidopsis-metabolic-pathways-are-frequently-influenced-by-different-pathogens
#14
Zhenhong Jiang, Fei He, Ziding Zhang
Through large-scale transcriptional data analyses, we highlighted the importance of plant metabolism in plant immunity and identified 26 metabolic pathways that were frequently influenced by the infection of 14 different pathogens. Reprogramming of plant metabolism is a common phenomenon in plant defense responses. Currently, a large number of transcriptional profiles of infected tissues in Arabidopsis (Arabidopsis thaliana) have been deposited in public databases, which provides a great opportunity to understand the expression patterns of metabolic pathways during plant defense responses at the systems level...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28536883/identification-of-genes-related-to-skin-development-in-potato
#15
Vijaya K R Vulavala, Edna Fogelman, Lior Rozental, Adi Faigenboim, Zachariah Tanami, Oded Shoseyov, Idit Ginzberg
Newly identified genes that are preferentially expressed in potato skin include genes that are associated with the secondary cell wall and stress-related activities and contribute to the skin's protective function. Microarrays were used to compare the skin and tuber-flesh transcriptomes of potato, to identify genes that contribute to the unique characteristics of the skin as a protective tissue. Functional gene analysis indicated that genes involved in developmental processes such as cell division, cell differentiation, morphogenesis and secondary cell wall formation (lignification and suberization), and stress-related activities, are more highly expressed in the skin than in the tuber flesh...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28508171/over-expression-of-tobacco-ubc1-encoding-a-ubiquitin-conjugating-enzyme-increases-cadmium-tolerance-by-activating-the-20s-26s-proteasome-and-by-decreasing-cd-accumulation-and-oxidative-stress-in-tobacco-nicotiana-tabacum
#16
Ramin Bahmani, DongGwan Kim, Byoung Doo Lee, Seongbin Hwang
Ubiquitin (Ub)-conjugating enzyme (UBC, E2) receives Ub from Ub-activating enzyme (E1) and transfers it to target proteins, thereby playing a key role in Ub/26S proteasome-dependent proteolysis. UBC has been reported to be involved in tolerating abiotic stress in plants, including drought, salt, osmotic and water stresses. To isolate the genes involved in Cd tolerance, we transformed WT (wild-type) yeast Y800 with a tobacco cDNA expression library and isolated a tobacco cDNA, NtUBC1 (Ub-conjugating enzyme), that enhances cadmium tolerance...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28466433/differences-in-specificity-and-compensatory-functions-among-three-major-starch-synthases-determine-the-structure-of-amylopectin-in-rice-endosperm
#17
Naoko Crofts, Kyohei Sugimoto, Naoko F Oitome, Yasunori Nakamura, Naoko Fujita
The lengths of amylopectin-branched chains are precise and influence the physicochemical properties of starch, which determine starch functionality. Three major isozymes of starch synthases (SSs), SSI, SSII(a), and SSIII(a), are primarily responsible for amylopectin chain elongation in the storage tissues of plants. To date, the majority of reported rice mutants were generated using japonica cultivars, which have almost inactive SSIIa. Although three SSs share some overlapping chain length preferences, whether they complement each other remains unknown due to the absence of suitable genetic combinations of materials...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28455648/overexpression-of-psp1-enhances-growth-of-transgenic-arabidopsis-plants-under-ambient-air-conditions
#18
Xiaofang Han, Keli Peng, Haixia Wu, Shanshan Song, Yerong Zhu, Yanling Bai, Yong Wang
The importance of the phosphorylated pathway (PPSB) of L-serine (Ser) biosynthesis in plant growth and development has been demonstrated, but its specific role in leaves and interaction with photorespiration, the main leaf Ser biosynthetic pathway at daytime, are still unclear. To investigate whether changes in biosynthesis of Ser by the PPSB in leaves could have an impact on photorespiration and plant growth, we overexpressed PSP1, the last enzyme of this pathway, under control of the Cauliflower Mosaic Virus 35S promoter in Arabidopsis thaliana...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28444544/methylglyoxal-detoxification-by-a-dj-1-family-protein-provides-dual-abiotic-and-biotic-stress-tolerance-in-transgenic-plants
#19
Prasad Melvin, Kondalarao Bankapalli, Patrick D'Silva, P V Shivaprasad
Methylglyoxal (MG) is a key signaling molecule resulting from glycolysis and other metabolic pathways. During abiotic stress, MG levels accumulate to toxic levels in affected cells. However, MG is routinely detoxified through the action of DJ1/PARK7/Hsp31 proteins that are highly conserved across kingdoms and mutations in such genes are associated with neurodegenerative diseases. Here, we report for the first time that, similar to abiotic stresses, MG levels increase during biotic stresses in plants, likely contributing to enhanced susceptibility to a wide range of stresses...
July 2017: Plant Molecular Biology
https://www.readbyqxmd.com/read/28429252/analysis-of-global-gene-expression-profiles-during-the-flowering-initiation-process-of-lilium%C3%A2-%C3%A3-%C3%A2-formolongi
#20
Yu-Fan Li, Ming-Fang Zhang, Meng Zhang, Gui-Xia Jia
The onset of flowering is critical for the reproductive development of plants. Lilium × formolongi is a lily hybrid that flowers within a year after sowing. We successfully identified four important stages during vegetative growth and flowering initiation of L. × formolongi under long day conditions. The plant tissues from the four stages were used in a genome-wide transcriptional analysis to investigate stage-specific changes of gene expression in L. × formolongi. In total, the sequence reads of the four RNA-sequencing libraries were assembled into 52,824 unigenes, of which 37,031 (70...
July 2017: Plant Molecular Biology
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