journal
MENU ▼
Read by QxMD icon Read
search

Glycobiology

journal
https://www.readbyqxmd.com/read/30325416/sequence-to-structure-dependence-of-isolated-igg-fc-complex-biantennary-n-glycans-a-molecular-dynamics-study
#1
Aoife M Harbison, Lorna P Brosnan, Keith Fenlon, Elisa Fadda
Fc glycosylation of human immunoglobulins G (IgGs) is essential for their structural integrity and activity. Interestingly, the specific nature of the Fc glycoforms is known to modulate the IgG effector function and inflammatory properties. Indeed, while core-fucosylation of IgG Fc-glycans greatly affects the antibody-dependent cell-mediated cytotoxicity (ADCC) function, with obvious repercussions in the design of therapeutic antibodies, sialylation can reverse the antibody inflammatory response, and galactosylation levels have been linked to aging, to the onset of inflammation, and to the predisposition to rheumatoid arthritis...
October 16, 2018: Glycobiology
https://www.readbyqxmd.com/read/30312397/oligosaccharyltransferase-structures-provide-novel-insight-into-the-mechanism-of-asparagine-linked-glycosylation-in-prokaryotic-and-eukaryotic-cells
#2
Shiteshu Shrimal, Reid Gilmore
Asparagine-linked (N-linked) glycosylation is one of the most common protein modification reactions in eukaryotic cells, occurring upon the majority of proteins that enter the secretory pathway. X-ray crystal structures of the single subunit OSTs from eubacterial and archaebacterial organisms revealed the location of donor and acceptor substrate binding sites and provided the basis for a catalytic mechanism. Cryoelectron microscopy structures of the octameric yeast OST provided substantial insight into the organization and assembly of the multisubunit oligosaccharyltransferases...
October 11, 2018: Glycobiology
https://www.readbyqxmd.com/read/30307501/society-for-glycobiology-awards-2018
#3
(no author information available yet)
No abstract text is available yet for this article.
October 11, 2018: Glycobiology
https://www.readbyqxmd.com/read/30289459/helicobacter-pylori-induces-intracellular-galectin-8-aggregation-around-damaged-lysosomes-within-gastric-epithelial-cells-in-a-host-o-glycan-dependent-manner
#4
Fang-Yen Li, I-Chun Weng, Chun-Hung Lin, Mou-Chieh Kao, Ming-Shiang Wu, Huan-Yuan Chen, Fu-Tong Liu
Galectin-8, a beta-galactoside-binding lectin, is upregulated in the gastric tissues of rhesus macaques infected with Helicobacter pylori. In this study, we found that H. pylori infection triggers intracellular galectin-8 aggregation in human-derived AGS gastric epithelial cells, and that these aggregates colocalize with lysosomes. Notably, this aggregation is markedly reduced following the attenuation of host O-glycan processing. This indicates that H. pylori infection induces lysosomal damage, which in turn results in the accumulation of cytosolic galectin-8 around damaged lysosomes through the recognition of exposed vacuolar host O-glycans...
October 5, 2018: Glycobiology
https://www.readbyqxmd.com/read/30289453/glycoengineered-antibodies-towards-the-next-generation-of-immunotherapeutics
#5
Renato Mastrangeli, Wolf Palinsky, Horst Bierau
Monoclonal antibodies (mAbs) are currently the largest and fastest growing class of biopharmaceuticals, and they address unmet medical needs e.g., in oncology and in auto-immune diseases. Their clinical efficacy and safety is significantly affected by the structure and composition of their glycosylation profile which is commonly heterogeneous, heavily dependent on the manufacturing process, and thus susceptible to variations in the cell culture conditions. Glycosylation is therefore considered a critical quality attribute (CQA) for mAbs...
October 4, 2018: Glycobiology
https://www.readbyqxmd.com/read/30239701/identification-of-key-amino-acid-residues-determining-ligand-binding-specificity-homodimerization-and-cellular-distribution-of-human-galectin-10
#6
Jiyong Su, Chenyang Song, Yunlong Si, Linlin Cui, Tong Yang, Yuying Li, Hao Wang, Guihua Tai, Yifa Zhou
Charcot-Leyden crystal protein/Gal-10, abundantly expressed in eosinophils and basophils, is related to several immune diseases. Recently, crystallographic and biochemical studies showed that Gal-10 cannot bind lactose, because a glutamate residue (Glu33) from another monomer blocks the binding site. Moreover, Gal-10 actually forms a novel dimeric structure compared to other galectins. To investigate the role that Glu33 plays in inhibiting lactose binding, we mutated this residue to glutamine, aspartate, and alanine...
September 20, 2018: Glycobiology
https://www.readbyqxmd.com/read/30239692/a-pipeline-to-translate-glycosaminoglycan-sequences-into-3d-models-application-to-the-exploration-of-glycosaminoglycan-conformational-space
#7
Olivier Clerc, Julien Mariethoz, Alain Rivet, Frédérique Lisacek, Serge Pérez, Sylvie Ricard-Blum
Mammalian glycosaminoglycans are linear complex polysaccharides comprising heparan sulfate, heparin, dermatan sulfate, chondroitin sulfate, keratan sulfate and hyaluronic acid. They bind to numerous proteins and these interactions mediate their biological activities. GAG-protein interaction data reported in the literature are curated mostly in MatrixDB database (http://matrixdb.univ-lyon1.fr/). However, a standard nomenclature and a machine-readable format of GAGs together with bioinformatics tools for mining these interaction data are lacking...
September 18, 2018: Glycobiology
https://www.readbyqxmd.com/read/30204870/galectin-3-binds-selectively-to-the-terminal-non-reducing-end-of-%C3%AE-1%C3%A2-4-galactans-with-overall-affinity-increasing-with-chain-length
#8
Michelle C Miller, Yi Zheng, Yifa Zhou, Guihua Tai, Kevin H Mayo
Galactans are linear polysaccharides of β(1→4)-linked galactose residues. Although they can antagonize galectin function, the nature of their binding to galectins needs to be better defined to develop them as drugs. Here, we investigated interactions between galectin-3 (Gal-3) and a series of galactans ranging in weight average molecular weight from 670 to 7550 Da. 15N-1H HSQC NMR studies with 15N-labeled Gal-3 carbohydrate recognition domain (CRD) indicate that each of these galactans interacts primarily with residues in β-strands 4, 5 and 6 on the canonical, β-galactoside sugar binding S-face...
September 11, 2018: Glycobiology
https://www.readbyqxmd.com/read/30204861/identity-and-role-of-the-non-conserved-acid-base-catalytic-residue-in-the-gh29-fucosidase-from-the-spider-nephilingis-cruentata
#9
Natalia N Perrella, Stephen G Withers, Adriana R Lopes
α-L-Fucosidases are widely occurring enzymes that remove fucose residues from N- and O-fucosylated glycoproteins. Comparison of amino acid sequences of fucosidases reveals that although the nucleophile is conserved among all α-L-fucosidases, the position of the acid/base residue is quite variable. Although several site-directed mutation studies have previously been performed on bacterial fucosidases, the only eukaryotic fucosidase so studied was the human fucosidase. Recent alignments indicate that human and Arthropoda α-L-fucosidases share at least 50% identity and the acid/base residue seems to be conserved among them suggesting a common acid/base residue in Metazoa...
September 10, 2018: Glycobiology
https://www.readbyqxmd.com/read/30202877/nature-inspired-engineering-of-an-f-type-lectin-for-increased-binding-strength
#10
Sonal Mahajan, T N C Ramya
Individual lectin-carbohydrate interactions are usually of low affinity. However, high avidity is frequently attained by the multivalent presentation of glycans on biological surfaces coupled with the occurrence of high order lectin oligomers or tandem repeats of lectin domains in the polypeptide. F-type lectins are L-fucose binding lectins with a typical sequence motif, HX(26)RXDX(4)R/K, whose residues participate in L-fucose binding. We previously reported the presence of a few eukaryotic F-type lectin domains with partial sequence duplication that results in the presence of two L-fucose-binding sequence motifs...
September 10, 2018: Glycobiology
https://www.readbyqxmd.com/read/30099481/ligand-binding-and-retention-in-snake-gourd-seed-lectin-sgsl-a-crystallographic-thermodynamic-and-molecular-dynamics-study
#11
Thyageshwar Chandran, Nukathoti Sivaji, Avadhesha Surolia, Mamannamana Vijayan
Snake gourd seed lectin (SGSL) is a non-toxic homologue of type II ribosome inactivating proteins (RIPs) which contain a catalytic domain and a lectin domain. Isothermal titration calorimetry (ITC) measurements of the interactions of the protein with LacNAc, Lac, Gal, Me-α-Gal were carried out and the crystal structures of the native protein and its complex with Lac were determined. The crystal structure of the Me-α-Gal complex has already been determined. While the crystal structure showed the presence of two-sugar binding sites, one on each of the two domains of the lectin chain, ITC measurements indicated the presence of only one binding site...
August 6, 2018: Glycobiology
https://www.readbyqxmd.com/read/30084948/members-of-the-galnac-t-family-of-enzymes-utilize-distinct-golgi-localization-mechanisms
#12
Jessica L Becker, Duy T Tran, Lawrence A Tabak
Mucin-type O-glycosylation is an evolutionarily conserved and essential post-translational protein modification that is initiated in the Golgi apparatus by a family of enzymes known as the UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferases (GalNAc-Ts). GalNAc-Ts are type II membrane proteins which contain short N-terminal tails located in the cytoplasm, a transmembrane domain that crosses the Golgi membrane, to which is connected a stem region that tethers the C-terminal catalytic and lectin domains that reside in the Golgi lumen...
August 6, 2018: Glycobiology
https://www.readbyqxmd.com/read/30085045/peter-albersheim-30-march-1934-23-july-2017
#13
(no author information available yet)
No abstract text is available yet for this article.
August 2, 2018: Glycobiology
https://www.readbyqxmd.com/read/29087497/polysaccharide-experienced-effector-t-cells-induce-il-10-in-foxp3-regulatory-t-cells-to-prevent-pulmonary-inflammation
#14
Jenny L Johnson, Mark B Jones, Brian A Cobb
Inhibition of peripheral inflammatory disease by carbohydrate antigens derived from normal gut microbiota has been demonstrated for the GI tract, brain, peritoneum, and most recently the airway. We have demonstrated that polysaccharide A (PSA) from the commensal organism Bacteroides fragilis activates CD4+ T cells upon presentation by the class II major histocompatibility complex, and that these PSA-experienced T cells prevent the development of lung inflammation in murine models. While the PSA-responding T cells themselves are not canonical FoxP3+ regulatory T cells (Tregs), their ability to prevent inflammation is dependent upon the suppressive cytokine IL-10...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/29087468/nmr-interaction-studies-of-neu5ac-%C3%AE-2-6-gal-%C3%AE-1-4-glcnac-with-influenza-virus-hemagglutinin-expressed-in-transfected-human-cells
#15
Francesca Vasile, Francesco Gubinelli, Maddalena Panigada, Elisa Soprana, Antonio Siccardi, Donatella Potenza
The emergence of escape-mutants of influenza hemagglutinin (HA) following vaccination compels the yearly re-formulation of flu vaccines. Since binding the sialic acid receptor remains in all cases essential for infection, small-molecule inhibitors of HA binding to sialic acid could be interesting therapeutic complements or alternatives to immuno-prophylaxis in the control of flu epidemics. In this work, we made use of NMR spectroscopy to study the interaction between a derivative of sialic acid (the Neu5Ac-α-(2,6)-Gal-β-(1-4)-GlcNAc trisaccharide) and HAs (H1 and H5) from human and avian strains of influenza virus, directly expressed on the surface of stable transfected 293 T human cells...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/29087466/concerted-mass-spectrometry-based-glycomic-approach-for-precision-mapping-of-sulfo-sialylated-n-glycans-on-human-peripheral-blood-mononuclear-cells-and-lymphocytes
#16
Jian-You Chen, Hsin-Hung Huang, Shin-Yi Yu, Shang-Ju Wu, Reiji Kannagi, Kay-Hooi Khoo
Despite well-recognized biological importance, mass spectrometry (MS)-based glycomic identification of sulfo-, sialylated terminal glyco-epitopes on the N-glycans of various immune cell types remains technically challenging and rarely reported. Previous studies with monoclonal antibody have implicated a regulated expression of 6-sulfo-α2-6-sialyl LacNAc on B cells in peripheral lymph nodes and the circulating peripheral blood lymphocytes but its occurrence on leukemia cells or lymphomas have not been critically addressed...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/29069492/lectin-zg16p-inhibits-proliferation-of-human-colorectal-cancer-cells-via-its-carbohydrate-binding-sites
#17
Akiko Mito, Yukiko Nakano, Takako Saitoh, Sabine S S Gouraud, Yoshiki Yamaguchi, Toshiro Sato, Nobuo Sasaki, Kyoko Kojima-Aikawa
Zymogen granule protein 16 (ZG16p) is a soluble lectin that binds to both mannose and heparin/heparan sulfate. It is highly expressed in the human digestive tract and is secreted into the mucus. In this study, we investigated the effect of ZG16p on the proliferation of human colorectal cancer cells. Overexpression of ZG16p in Caco-2 cells decreased cell growth. Recombinant ZG16p markedly inhibited proliferation of Caco-2, LS174T, HCT116 and HCT15 cells. Caco-2 cell growth was not inhibited by two mutated ZG16p proteins, D151A and M5 (K36A, R37A, R53A, R55A and R79A) lacking mannose- and heparin-binding activities, respectively...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/29069438/loss-of-heparan-sulfate-in-the-niche-leads-to-tumor-like-germ-cell-growth-in-the-drosophila-testis
#18
Daniel C Levings, Hiroshi Nakato
The stem cell niche normally prevents aberrant stem cell behaviors that lead to cancer formation. Recent studies suggest that some cancers are derived from endogenous populations of adult stem cells that have somehow escaped from normal control by the niche. However, the molecular mechanisms by which the niche retains stem cells locally and tightly controls their divisions are poorly understood. Here, we demonstrate that the presence of heparan sulfate (HS), a class glygosaminoglycan chains, in the Drosophila germline stem cell niche prevents tumor formation in the testis...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/29040563/ten-years-of-cazypedia-a-living-encyclopedia-of-carbohydrate-active-enzymes
#19
(no author information available yet)
CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration...
December 1, 2018: Glycobiology
https://www.readbyqxmd.com/read/30169771/sensitized-genetic-backgrounds-reveal-differential-roles-for-egf-repeat-xylosyltransferases-in-drosophila-notch-signaling
#20
Ashutosh Pandey, David Li-Kroeger, Maya K Sethi, Tom V Lee, Falk Fr Buettner, Hans Bakker, Hamed Jafar-Nejad
In multicellular organisms, glycosylation regulates various developmental signaling pathways including the Notch pathway. One of the O-linked glycans added to epidermal growth factor-like (EGF) repeats in animal proteins including the Notch receptors is the xylose-xylose-glucose-O oligosaccharide. Drosophila glucoside xylosyltransferase (Gxylt) Shams negatively regulates Notch signaling in specific contexts. Since Shams adds the first xylose residue to O-glucose, its loss-of-function phenotype could be due to the loss of the first xylose, the second xylose or both...
November 1, 2018: Glycobiology
journal
journal
30682
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"